Wall clock time and date at job start Sat Apr 11 2020 07:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35963 * 120.57233 * 2 1 4 4 C 1.40843 * 119.34424 * 180.25136 * 3 2 1 5 5 O 1.21852 * 119.76113 * 179.75946 * 4 3 2 6 6 O 1.34379 * 120.48185 * 359.72992 * 4 3 2 7 7 C 1.33720 * 121.21000 * 0.02562 * 6 4 3 8 8 C 1.50707 * 119.69078 * 180.02562 * 7 6 4 9 9 C 1.37594 * 120.61838 * 359.97438 * 7 6 4 10 10 C 1.47521 * 120.25618 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99881 * 90.00173 * 10 9 7 12 12 N 1.34773 * 120.00175 * 270.27341 * 10 9 7 13 13 C 1.47856 * 122.22603 * 359.72880 * 12 10 9 14 14 C 1.52716 * 111.05479 * 232.46238 * 13 12 10 15 15 C 1.53866 * 111.52688 * 311.46403 * 14 13 12 16 16 C 1.51077 * 107.34629 * 56.93011 * 15 14 13 17 17 H 1.09000 * 108.73138 * 50.84288 * 16 15 14 18 18 C 1.45727 * 122.23049 * 179.43452 * 12 10 9 19 19 H 1.08995 * 111.07242 * 240.55310 * 18 12 10 20 20 C 1.53527 * 116.31274 * 10.40914 * 18 12 10 21 21 C 1.55470 * 101.75046 * 152.41944 * 20 18 12 22 22 N 1.45024 * 119.19696 * 176.11288 * 16 15 14 23 23 C 1.36933 * 126.56380 * 331.25948 * 22 16 15 24 24 H 1.08000 * 119.99881 * 359.97438 * 23 22 16 25 25 C 1.38807 * 120.00312 * 179.97438 * 23 22 16 26 26 N 1.31623 * 119.99998 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00088 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47178 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46814 * 120.00294 * 27 25 23 30 30 H 1.48496 * 109.47289 * 240.00036 * 27 25 23 31 31 H 1.09007 * 109.47080 * 270.26614 * 1 2 3 32 32 H 1.08998 * 109.47189 * 30.26522 * 1 2 3 33 33 H 1.08997 * 109.47582 * 150.26432 * 1 2 3 34 34 H 1.08005 * 120.33007 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.46923 * 269.97667 * 8 7 6 36 36 H 1.08998 * 109.47179 * 29.97663 * 8 7 6 37 37 H 1.09001 * 109.47137 * 149.97848 * 8 7 6 38 38 H 1.08998 * 109.15859 * 352.87225 * 13 12 10 39 39 H 1.09002 * 109.15913 * 112.11491 * 13 12 10 40 40 H 1.09003 * 109.06298 * 71.99218 * 14 13 12 41 41 H 1.09001 * 109.07052 * 191.00058 * 14 13 12 42 42 H 1.08999 * 109.88234 * 176.38911 * 15 14 13 43 43 H 1.09001 * 109.88014 * 297.39161 * 15 14 13 44 44 H 1.08996 * 111.12106 * 34.22021 * 20 18 12 45 45 H 1.09002 * 110.80914 * 270.47965 * 20 18 12 46 46 H 1.09002 * 109.96224 * 217.81999 * 21 20 18 47 47 H 1.08998 * 109.96156 * 96.58161 * 21 20 18 48 48 H 0.96998 * 120.00328 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1706 0.0000 4 6 3.6065 1.1404 -0.0054 5 8 4.2339 2.1850 -0.0099 6 8 4.2632 -0.0320 -0.0050 7 6 3.6040 -1.1954 -0.0001 8 6 4.3751 -2.4902 0.0007 9 6 2.2284 -1.2214 0.0053 10 6 1.5093 -2.5094 0.0101 11 8 1.2170 -3.0386 1.0653 12 7 1.1811 -3.1024 -1.1548 13 6 1.5121 -2.5031 -2.4653 14 6 0.2735 -2.4074 -3.3534 15 6 -0.5007 -3.7367 -3.3878 16 6 -0.8519 -4.0904 -1.9616 17 1 -1.3253 -3.2275 -1.4933 18 6 0.4820 -4.3800 -1.2067 19 1 1.0782 -5.1324 -1.7228 20 6 -0.0825 -4.9014 0.1225 21 6 -1.2819 -5.7649 -0.3599 22 7 -1.6642 -5.2637 -1.7032 23 6 -2.6036 -5.8057 -2.5392 24 1 -2.7979 -5.3517 -3.4996 25 6 -3.3060 -6.9387 -2.1522 26 7 -3.0695 -7.4917 -0.9814 27 14 -4.5880 -7.6776 -3.2924 28 1 -4.6638 -6.8741 -4.5388 29 1 -4.2074 -9.0737 -3.6263 30 1 -5.9112 -7.6730 -2.6186 31 1 -0.3633 0.0048 1.0277 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3634 -0.8923 -0.5097 34 1 1.6732 2.1144 -0.0004 35 1 4.5575 -2.8052 -1.0267 36 1 5.3274 -2.3457 0.5109 37 1 3.7981 -3.2564 0.5186 38 1 1.9187 -1.5039 -2.3092 39 1 2.2607 -3.1204 -2.9620 40 1 -0.3803 -1.6243 -2.9694 41 1 0.5809 -2.1492 -4.3667 42 1 -1.4111 -3.6204 -3.9757 43 1 0.1233 -4.5180 -3.8218 44 1 -0.4216 -4.0804 0.7542 45 1 0.6546 -5.5129 0.6429 46 1 -2.1192 -5.6571 0.3296 47 1 -0.9848 -6.8117 -0.4240 48 1 -3.5606 -8.2832 -0.7108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049581881.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:45 Heat of formation + Delta-G solvation = -38.960217 kcal Electronic energy + Delta-G solvation = -32302.056354 eV Core-core repulsion = 28131.112949 eV Total energy + Delta-G solvation = -4170.943405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.40057 -40.51132 -38.33222 -37.83602 -36.20205 -35.46069 -33.15724 -32.74721 -32.11795 -29.28115 -29.08253 -28.39864 -28.04734 -25.20761 -24.56138 -24.02862 -22.29743 -21.62651 -21.37162 -20.12900 -19.52905 -18.58885 -17.59454 -17.24098 -16.85600 -16.58761 -15.77578 -15.44390 -15.19536 -14.78092 -14.42294 -14.34201 -14.25880 -14.03492 -13.95990 -13.74247 -13.61812 -13.55532 -13.23300 -12.84665 -12.69730 -12.61860 -12.57497 -12.34546 -12.05243 -11.94712 -11.68099 -11.23630 -10.96067 -10.84750 -10.80778 -10.59740 -10.55530 -10.51155 -10.14665 -10.11381 -9.95238 -9.68931 -9.27951 -8.67693 -8.63850 -8.41229 -6.89898 -5.76211 -3.10835 0.09414 1.06726 1.91720 2.45684 2.80892 3.00439 3.35938 3.41301 3.43995 3.78619 3.93455 4.23226 4.42466 4.44099 4.69711 4.72527 4.85672 4.94326 4.94783 5.07959 5.17721 5.23798 5.27833 5.32345 5.33497 5.39216 5.46189 5.52208 5.55951 5.66271 5.73420 5.81689 5.82984 5.90003 5.97456 6.12970 6.18009 6.28415 6.43680 6.60922 6.65101 6.77668 6.78326 7.04576 7.19110 7.43554 7.53147 7.58928 7.77620 8.12846 8.18811 9.13115 9.77018 10.44131 11.35746 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.002992 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.725037 B = 9356.366311 C = 9643.845339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 C -0.281 4.281 4 C 0.499 3.501 5 O -0.477 6.477 6 O -0.257 6.257 7 C 0.182 3.818 8 C -0.120 4.120 9 C -0.251 4.251 10 C 0.579 3.421 11 O -0.515 6.515 12 N -0.588 5.588 13 C 0.110 3.890 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.161 3.839 17 H 0.017 0.983 18 C 0.113 3.887 19 H 0.085 0.915 20 C -0.130 4.130 21 C 0.172 3.828 22 N -0.592 5.592 23 C -0.228 4.228 24 H 0.079 0.921 25 C -0.006 4.006 26 N -0.918 5.918 27 Si 0.910 3.090 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.057 0.943 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.645 12.394 -1.261 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 C -0.300 4.300 4 C 0.352 3.648 5 O -0.367 6.367 6 O -0.166 6.166 7 C 0.132 3.868 8 C -0.176 4.176 9 C -0.255 4.255 10 C 0.365 3.635 11 O -0.391 6.391 12 N -0.321 5.321 13 C -0.013 4.013 14 C -0.168 4.168 15 C -0.155 4.155 16 C 0.051 3.949 17 H 0.034 0.966 18 C 0.009 3.991 19 H 0.103 0.897 20 C -0.168 4.168 21 C 0.048 3.952 22 N -0.316 5.316 23 C -0.356 4.356 24 H 0.097 0.903 25 C -0.203 4.203 26 N -0.566 5.566 27 Si 0.740 3.260 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.821 12.440 -0.685 17.877 hybrid contribution -0.898 -0.267 -0.646 1.138 sum 11.923 12.172 -1.331 17.091 Atomic orbital electron populations 1.21100 0.88859 1.04584 1.04435 1.20331 0.97639 0.90556 0.85422 1.22230 0.92555 1.00275 1.14982 1.19274 0.88420 0.80712 0.76417 1.91006 1.70896 1.25774 1.49036 1.83392 1.44659 1.14613 1.73892 1.22771 0.90343 0.85489 0.88158 1.21155 1.01514 0.89490 1.05407 1.19982 0.92712 0.95946 1.16895 1.17446 0.79097 0.83028 0.83925 1.90858 1.53513 1.64138 1.30634 1.48053 1.56907 1.22114 1.04996 1.21725 0.97843 0.98336 0.83404 1.21900 0.96532 0.99166 0.99175 1.21436 0.99924 0.95471 0.98644 1.20839 0.89592 0.91449 0.93018 0.96575 1.22663 0.93210 0.83167 1.00043 0.89744 1.22996 0.98680 1.00482 0.94680 1.21751 0.92204 0.95897 0.85397 1.44084 1.42035 1.28873 1.16631 1.19017 1.11610 1.07239 0.97710 0.90291 1.24804 1.00049 0.98232 0.97176 1.69948 1.43865 1.22980 1.19767 0.86083 0.81231 0.78945 0.79708 1.20527 1.21763 1.21762 0.88787 0.89706 0.89888 0.81934 0.87826 0.88520 0.87627 0.90783 0.91165 0.91782 0.90747 0.91333 0.91644 0.89960 0.91994 0.94201 0.92484 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.67 36.00 0.35 -0.91 16 2 C 0.06 0.64 5.85 -104.06 -0.61 0.03 16 3 C -0.28 -2.88 9.65 -39.41 -0.38 -3.26 16 4 C 0.50 6.23 7.93 31.72 0.25 6.48 16 5 O -0.48 -7.38 17.93 -19.60 -0.35 -7.73 16 6 O -0.26 -2.91 9.81 -17.61 -0.17 -3.08 16 7 C 0.18 1.81 7.03 -34.54 -0.24 1.56 16 8 C -0.12 -0.87 9.80 36.01 0.35 -0.52 16 9 C -0.25 -2.80 3.77 -104.97 -0.40 -3.20 16 10 C 0.58 7.81 4.10 -12.48 -0.05 7.76 16 11 O -0.52 -8.72 13.90 5.27 0.07 -8.65 16 12 N -0.59 -7.69 2.90 -164.85 -0.48 -8.17 16 13 C 0.11 1.11 6.31 -3.44 -0.02 1.08 16 14 C -0.13 -1.41 5.92 -26.43 -0.16 -1.56 16 15 C -0.12 -1.77 5.45 -27.25 -0.15 -1.92 16 16 C 0.16 3.01 2.58 -68.10 -0.18 2.84 16 17 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 18 C 0.11 1.88 3.37 -66.48 -0.22 1.65 16 19 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 20 C -0.13 -2.49 5.00 -25.15 -0.13 -2.61 16 21 C 0.17 4.06 5.47 -1.69 -0.01 4.05 16 22 N -0.59 -14.17 3.35 -162.98 -0.55 -14.72 16 23 C -0.23 -5.98 9.94 -15.06 -0.15 -6.13 16 24 H 0.08 1.99 7.31 -52.49 -0.38 1.61 16 25 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 26 N -0.92 -26.23 10.46 55.49 0.58 -25.65 16 27 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.08 0.92 7.18 -51.93 -0.37 0.55 16 34 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.91 6.99 -51.93 -0.36 0.54 16 38 H 0.07 0.64 6.44 -51.93 -0.33 0.31 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.12 7.70 -51.93 -0.40 0.72 16 43 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 44 H 0.08 1.65 6.21 -51.93 -0.32 1.33 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.04 1.05 7.81 -51.93 -0.41 0.64 16 47 H 0.06 1.48 7.19 -51.93 -0.37 1.11 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -32.35 379.12 -9.19 -41.54 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.15 Total: -0.71 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.83 Total: 5.10 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.44 Total: -48.54 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.45 Total: -19.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.35 -9.19 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049581881.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.584 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds