Wall clock time and date at job start Sat Apr 11 2020 07:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35963 * 120.56792 * 2 1 4 4 C 1.40841 * 119.34294 * 180.02562 * 3 2 1 5 5 O 1.21846 * 119.76138 * 180.02562 * 4 3 2 6 6 O 1.34378 * 120.48332 * 0.02562 * 4 3 2 7 7 C 1.33732 * 121.20781 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.68750 * 180.02562 * 7 6 4 9 9 C 1.37593 * 120.61697 * 0.02562 * 7 6 4 10 10 C 1.47519 * 120.25503 * 180.27536 * 9 7 6 11 11 O 1.21600 * 120.00022 * 269.72127 * 10 9 7 12 12 N 1.34777 * 120.00302 * 89.72021 * 10 9 7 13 13 C 1.47854 * 122.22250 * 359.97438 * 12 10 9 14 14 C 1.52719 * 111.05449 * 127.51145 * 13 12 10 15 15 C 1.53878 * 111.52461 * 48.53755 * 14 13 12 16 16 C 1.51081 * 107.34193 * 303.07163 * 15 14 13 17 17 H 1.08999 * 108.73193 * 309.15456 * 16 15 14 18 18 C 1.45721 * 122.23203 * 179.71210 * 12 10 9 19 19 H 1.09001 * 111.06978 * 119.47012 * 18 12 10 20 20 C 1.53342 * 116.42964 * 350.63378 * 18 12 10 21 21 C 1.55468 * 101.58015 * 206.93089 * 20 18 12 22 22 N 1.45024 * 119.19436 * 183.88788 * 16 15 14 23 23 C 1.36932 * 126.56243 * 28.80930 * 22 16 15 24 24 H 1.07999 * 120.00130 * 353.01473 * 23 22 16 25 25 C 1.38811 * 120.00097 * 173.01959 * 23 22 16 26 26 N 1.31620 * 120.00082 * 5.65737 * 25 23 22 27 27 Si 1.86804 * 120.00176 * 185.66258 * 25 23 22 28 28 H 1.48501 * 109.46991 * 94.98184 * 27 25 23 29 29 H 1.48498 * 109.46960 * 214.98514 * 27 25 23 30 30 H 1.48496 * 109.46733 * 334.98274 * 27 25 23 31 31 H 1.08995 * 109.47430 * 269.97753 * 1 2 3 32 32 H 1.09010 * 109.47105 * 29.97404 * 1 2 3 33 33 H 1.09004 * 109.46938 * 149.97162 * 1 2 3 34 34 H 1.08008 * 120.32990 * 0.04955 * 3 2 1 35 35 H 1.09002 * 109.47207 * 269.97441 * 8 7 6 36 36 H 1.08997 * 109.47397 * 29.97466 * 8 7 6 37 37 H 1.09005 * 109.46708 * 149.97820 * 8 7 6 38 38 H 1.08994 * 109.16470 * 247.91528 * 13 12 10 39 39 H 1.08995 * 109.16528 * 7.10847 * 13 12 10 40 40 H 1.08997 * 109.07265 * 169.06565 * 14 13 12 41 41 H 1.09009 * 109.07175 * 288.08219 * 14 13 12 42 42 H 1.08996 * 109.87710 * 62.53048 * 15 14 13 43 43 H 1.08997 * 109.88098 * 183.61341 * 15 14 13 44 44 H 1.09004 * 111.21437 * 88.78252 * 20 18 12 45 45 H 1.08997 * 110.87304 * 324.92825 * 20 18 12 46 46 H 1.09001 * 109.95893 * 263.00013 * 21 20 18 47 47 H 1.08996 * 109.96042 * 141.76739 * 21 20 18 48 48 H 0.97001 * 120.00686 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1406 -0.0005 5 8 4.2338 2.1851 -0.0001 6 8 4.2633 -0.0318 -0.0016 7 6 3.6041 -1.1953 -0.0016 8 6 4.3752 -2.4901 -0.0022 9 6 2.2284 -1.2213 -0.0011 10 6 1.5093 -2.5094 0.0050 11 8 1.2082 -3.0426 -1.0456 12 7 1.1861 -3.0953 1.1749 13 6 1.5284 -2.4911 2.4803 14 6 0.2959 -2.3849 3.3758 15 6 -0.4845 -3.7104 3.4217 16 6 -0.8464 -4.0694 1.9995 17 1 -1.3186 -3.2065 1.5299 18 6 0.4712 -4.3636 1.2376 19 1 1.0632 -5.1222 1.7497 20 6 -0.0933 -4.8950 -0.0853 21 6 -1.2935 -5.7507 0.4088 22 7 -1.6659 -5.2400 1.7521 23 6 -2.6035 -5.7725 2.5961 24 1 -2.7117 -5.3832 3.5977 25 6 -3.4149 -6.8128 2.1645 26 7 -3.2100 -7.3618 0.9860 27 14 -4.7978 -7.4335 3.2563 28 1 -6.0662 -6.7589 2.8801 29 1 -4.9464 -8.9006 3.0808 30 1 -4.4801 -7.1344 4.6756 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8903 -0.5135 33 1 -0.3633 -0.8898 -0.5143 34 1 1.6731 2.1144 0.0008 35 1 4.5604 -2.8022 -1.0300 36 1 5.3261 -2.3468 0.5109 37 1 3.7968 -3.2576 0.5120 38 1 2.2778 -3.1089 2.9750 39 1 1.9387 -1.4947 2.3168 40 1 0.6109 -2.1220 4.3855 41 1 -0.3573 -1.6015 2.9913 42 1 0.1390 -4.4927 3.8544 43 1 -1.3906 -3.5867 4.0148 44 1 0.6382 -5.5126 -0.6065 45 1 -0.4326 -4.0761 -0.7196 46 1 -1.0006 -6.7985 0.4764 47 1 -2.1345 -5.6426 -0.2761 48 1 -3.7772 -8.0885 0.6841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049581882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:50 Heat of formation + Delta-G solvation = -39.001804 kcal Electronic energy + Delta-G solvation = -32303.904450 eV Core-core repulsion = 28132.959242 eV Total energy + Delta-G solvation = -4170.945209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40237 -40.53236 -38.34927 -37.85287 -36.18976 -35.47425 -33.18203 -32.75049 -32.11748 -29.27162 -29.08731 -28.41436 -28.05934 -25.21496 -24.56785 -24.02843 -22.29755 -21.63459 -21.37170 -20.14239 -19.52583 -18.59482 -17.59831 -17.24370 -16.85048 -16.59048 -15.80195 -15.45181 -15.18277 -14.79735 -14.42774 -14.35235 -14.24794 -14.02662 -13.96710 -13.79251 -13.57069 -13.55399 -13.21585 -12.92132 -12.64584 -12.63646 -12.54880 -12.35196 -12.05538 -11.93804 -11.70038 -11.23680 -10.97386 -10.83213 -10.81600 -10.61598 -10.56295 -10.50760 -10.17447 -10.12147 -9.95159 -9.67186 -9.29826 -8.66836 -8.62644 -8.42714 -6.88770 -5.77476 -3.11282 0.09320 1.06561 1.91519 2.44976 2.80940 3.00031 3.36323 3.41438 3.43744 3.78500 3.93427 4.22803 4.42233 4.44121 4.70334 4.71805 4.83654 4.94503 4.96669 5.07802 5.17454 5.23911 5.28157 5.31044 5.33734 5.39150 5.44759 5.51169 5.56211 5.65501 5.74989 5.80806 5.84573 5.89179 5.96881 6.12514 6.17953 6.27986 6.43591 6.60698 6.64912 6.77635 6.78095 7.04473 7.18993 7.43440 7.51816 7.59866 7.76874 8.12457 8.18619 9.12711 9.76850 10.44578 11.35258 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.022246 B = 0.002999 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.346508 B = 9334.826717 C = 9615.218030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 C -0.281 4.281 4 C 0.499 3.501 5 O -0.477 6.477 6 O -0.257 6.257 7 C 0.182 3.818 8 C -0.118 4.118 9 C -0.251 4.251 10 C 0.579 3.421 11 O -0.515 6.515 12 N -0.589 5.589 13 C 0.109 3.891 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.161 3.839 17 H 0.017 0.983 18 C 0.114 3.886 19 H 0.083 0.917 20 C -0.131 4.131 21 C 0.173 3.827 22 N -0.591 5.591 23 C -0.230 4.230 24 H 0.079 0.921 25 C -0.004 4.004 26 N -0.917 5.917 27 Si 0.909 3.091 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.961 12.134 1.233 17.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 C -0.300 4.300 4 C 0.352 3.648 5 O -0.367 6.367 6 O -0.166 6.166 7 C 0.132 3.868 8 C -0.174 4.174 9 C -0.255 4.255 10 C 0.365 3.635 11 O -0.391 6.391 12 N -0.321 5.321 13 C -0.013 4.013 14 C -0.167 4.167 15 C -0.155 4.155 16 C 0.051 3.949 17 H 0.034 0.966 18 C 0.010 3.990 19 H 0.101 0.899 20 C -0.169 4.169 21 C 0.048 3.952 22 N -0.316 5.316 23 C -0.358 4.358 24 H 0.097 0.903 25 C -0.201 4.201 26 N -0.564 5.564 27 Si 0.739 3.261 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.131 12.176 0.648 17.919 hybrid contribution -0.964 -0.203 0.618 1.163 sum 12.167 11.973 1.266 17.117 Atomic orbital electron populations 1.21099 0.88842 1.04868 1.04183 1.20328 0.97654 0.90533 0.85414 1.22234 0.92553 1.00278 1.14968 1.19272 0.88420 0.80707 0.76416 1.91004 1.70897 1.25766 1.49029 1.83393 1.44652 1.14605 1.73905 1.22771 0.90345 0.85493 0.88175 1.21135 1.01234 0.89273 1.05771 1.19973 0.92695 0.95938 1.16916 1.17445 0.79173 0.83009 0.83866 1.90857 1.53347 1.63738 1.31115 1.48035 1.56414 1.22683 1.04980 1.21727 0.97786 0.98299 0.83516 1.21898 0.96537 0.99177 0.99122 1.21438 0.99861 0.95508 0.98675 1.20633 0.89676 0.91533 0.93040 0.96559 1.22420 0.93130 0.83401 1.00019 0.89947 1.22971 0.98712 1.00456 0.94780 1.21746 0.92334 0.95491 0.85626 1.44086 1.42197 1.28486 1.16835 1.18973 1.08894 1.13746 0.94191 0.90338 1.24821 0.99379 0.98915 0.96989 1.69947 1.40211 1.26904 1.19307 0.86155 0.82520 0.77913 0.79489 1.21620 1.21760 1.20638 0.88939 0.89705 0.89704 0.81928 0.87554 0.88555 0.88021 0.91145 0.90784 0.90737 0.91803 0.91695 0.91270 0.91912 0.89993 0.93128 0.93731 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.67 36.00 0.35 -0.91 16 2 C 0.06 0.64 5.86 -104.06 -0.61 0.03 16 3 C -0.28 -2.88 9.64 -39.41 -0.38 -3.26 16 4 C 0.50 6.23 7.93 31.72 0.25 6.48 16 5 O -0.48 -7.37 17.93 -19.59 -0.35 -7.72 16 6 O -0.26 -2.90 9.81 -17.64 -0.17 -3.08 16 7 C 0.18 1.80 7.03 -34.54 -0.24 1.56 16 8 C -0.12 -0.86 9.80 36.00 0.35 -0.51 16 9 C -0.25 -2.80 3.76 -104.97 -0.39 -3.20 16 10 C 0.58 7.82 4.10 -12.48 -0.05 7.77 16 11 O -0.51 -8.73 13.93 5.28 0.07 -8.66 16 12 N -0.59 -7.69 2.89 -165.57 -0.48 -8.17 16 13 C 0.11 1.10 6.31 -3.44 -0.02 1.08 16 14 C -0.13 -1.40 5.92 -26.42 -0.16 -1.55 16 15 C -0.12 -1.77 5.42 -27.24 -0.15 -1.91 16 16 C 0.16 3.02 2.58 -68.62 -0.18 2.84 16 17 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 18 C 0.11 1.89 3.28 -67.11 -0.22 1.67 16 19 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 20 C -0.13 -2.50 5.02 -25.24 -0.13 -2.63 16 21 C 0.17 4.08 5.45 -1.65 -0.01 4.07 16 22 N -0.59 -14.17 3.35 -163.53 -0.55 -14.72 16 23 C -0.23 -6.04 9.95 -15.06 -0.15 -6.19 16 24 H 0.08 1.98 7.28 -52.49 -0.38 1.59 16 25 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 26 N -0.92 -26.22 10.51 55.49 0.58 -25.64 16 27 Si 0.91 21.38 29.56 -169.99 -5.02 16.36 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.64 8.09 -51.92 -0.42 0.22 16 33 H 0.08 1.00 7.18 -51.93 -0.37 0.63 16 34 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.79 6.99 -51.93 -0.36 0.43 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.64 6.45 -51.93 -0.33 0.31 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 43 H 0.07 1.12 7.72 -51.93 -0.40 0.72 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.65 6.20 -51.93 -0.32 1.33 16 46 H 0.05 1.31 7.44 -51.93 -0.39 0.92 16 47 H 0.04 1.18 7.62 -51.93 -0.40 0.78 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -32.38 379.17 -9.19 -41.57 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.16 Total: -0.79 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.83 Total: 5.12 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.44 Total: -48.52 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.45 Total: -19.45 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.38 -9.19 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049581882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.571 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds