Wall clock time and date at job start Sat Apr 11 2020 07:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35959 * 120.56769 * 2 1 4 4 C 1.40849 * 119.33618 * 179.97438 * 3 2 1 5 5 O 1.21858 * 119.75301 * 180.02562 * 4 3 2 6 6 O 1.34371 * 120.48841 * 0.02562 * 4 3 2 7 7 C 1.33728 * 121.20762 * 359.66516 * 6 4 3 8 8 C 1.50702 * 119.69091 * 180.32748 * 7 6 4 9 9 C 1.37591 * 120.61761 * 0.61982 * 7 6 4 10 10 C 1.47523 * 120.25795 * 179.68322 * 9 7 6 11 11 O 1.21598 * 119.99981 * 269.72402 * 10 9 7 12 12 N 1.34783 * 119.99590 * 89.72884 * 10 9 7 13 13 C 1.46795 * 119.57831 * 359.97438 * 12 10 9 14 14 C 1.53453 * 107.60074 * 232.02745 * 13 12 10 15 15 C 1.52742 * 108.43782 * 301.92796 * 14 13 12 16 16 C 1.53010 * 110.76772 * 63.78956 * 15 14 13 17 17 H 1.08999 * 111.38172 * 68.74184 * 16 15 14 18 18 C 1.45112 * 119.57116 * 179.97438 * 12 10 9 19 19 H 1.09000 * 109.97214 * 11.04761 * 18 12 10 20 20 C 1.54423 * 111.60905 * 248.67473 * 18 12 10 21 21 C 1.54566 * 102.38460 * 203.37674 * 20 18 12 22 22 N 1.47120 * 107.28042 * 21.72388 * 21 20 18 23 23 C 1.36939 * 125.76634 * 182.59104 * 22 21 20 24 24 H 1.07995 * 119.99953 * 173.26532 * 23 22 21 25 25 C 1.38817 * 119.99669 * 353.25815 * 23 22 21 26 26 N 1.31610 * 120.00214 * 6.36407 * 25 23 22 27 27 Si 1.86804 * 119.99716 * 186.35919 * 25 23 22 28 28 H 1.48500 * 109.46930 * 94.98947 * 27 25 23 29 29 H 1.48496 * 109.47305 * 214.98816 * 27 25 23 30 30 H 1.48504 * 109.47008 * 334.99185 * 27 25 23 31 31 H 1.09003 * 109.46883 * 270.01659 * 1 2 3 32 32 H 1.09002 * 109.46633 * 30.01798 * 1 2 3 33 33 H 1.09002 * 109.47078 * 150.02068 * 1 2 3 34 34 H 1.08002 * 120.33462 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.47048 * 270.28772 * 8 7 6 36 36 H 1.09000 * 109.47212 * 30.28962 * 8 7 6 37 37 H 1.09009 * 109.46646 * 150.28802 * 8 7 6 38 38 H 1.09002 * 109.83203 * 112.49657 * 13 12 10 39 39 H 1.09006 * 109.88499 * 351.58311 * 13 12 10 40 40 H 1.08999 * 109.64526 * 182.24123 * 14 13 12 41 41 H 1.08998 * 109.81723 * 61.70815 * 14 13 12 42 42 H 1.09005 * 109.20916 * 184.11311 * 15 14 13 43 43 H 1.08998 * 109.20936 * 303.46895 * 15 14 13 44 44 H 1.09002 * 110.80888 * 321.66461 * 20 18 12 45 45 H 1.08994 * 110.81053 * 85.18694 * 20 18 12 46 46 H 1.08998 * 109.90895 * 262.27537 * 21 20 18 47 47 H 1.09003 * 109.83242 * 141.12163 * 21 20 18 48 48 H 0.96999 * 120.00380 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1706 0.0000 4 6 3.6066 1.1404 0.0005 5 8 4.2340 2.1851 0.0010 6 8 4.2633 -0.0319 0.0006 7 6 3.6041 -1.1954 0.0067 8 6 4.3752 -2.4902 0.0140 9 6 2.2285 -1.2215 0.0004 10 6 1.5094 -2.5096 0.0003 11 8 1.2134 -3.0405 -1.0529 12 7 1.1804 -3.0978 1.1675 13 6 1.5426 -2.4488 2.4334 14 6 2.2850 -3.4835 3.2895 15 6 1.3695 -4.6892 3.4920 16 6 1.0707 -5.3739 2.1567 17 1 1.9587 -5.8589 1.7513 18 6 0.4725 -4.3645 1.1566 19 1 0.4662 -4.7788 0.1484 20 6 -0.9744 -4.2119 1.6741 21 6 -1.3097 -5.6444 2.1480 22 7 -0.0333 -6.3327 2.3959 23 6 0.1099 -7.6389 2.7813 24 1 1.0935 -8.0820 2.8326 25 6 -1.0091 -8.3933 3.1064 26 7 -2.2138 -7.8955 2.9249 27 14 -0.8050 -10.1153 3.8012 28 1 -0.8499 -10.0591 5.2844 29 1 -1.9035 -10.9827 3.3053 30 1 0.5009 -10.6730 3.3663 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8899 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6733 2.1144 0.0004 35 1 4.5658 -2.8053 -1.0119 36 1 5.3234 -2.3455 0.5318 37 1 3.7940 -3.2563 0.5274 38 1 0.6418 -2.1185 2.9507 39 1 2.1918 -1.5948 2.2397 40 1 2.5356 -3.0472 4.2564 41 1 3.1970 -3.7973 2.7817 42 1 1.8560 -5.4009 4.1592 43 1 0.4339 -4.3575 3.9423 44 1 -1.0162 -3.5079 2.5052 45 1 -1.6427 -3.9038 0.8701 46 1 -1.8703 -6.1695 1.3747 47 1 -1.8931 -5.6025 3.0679 48 1 -2.9958 -8.4228 3.1516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049581883.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:53 Heat of formation + Delta-G solvation = -63.074279 kcal Electronic energy + Delta-G solvation = -32187.188728 eV Core-core repulsion = 28015.199658 eV Total energy + Delta-G solvation = -4171.989070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.32624 -41.72897 -39.70291 -38.99771 -37.08102 -36.74399 -34.30599 -33.77005 -33.64952 -30.91764 -29.94610 -29.81973 -28.99258 -26.56599 -25.97104 -25.20499 -23.35697 -23.08954 -22.42184 -21.84597 -19.94059 -19.38875 -19.06585 -18.70665 -18.18902 -17.82746 -17.43633 -16.75477 -16.28374 -16.12372 -15.92437 -15.29298 -15.18889 -15.14289 -14.94676 -14.73747 -14.59805 -14.48448 -14.27633 -14.05881 -13.94332 -13.68020 -13.50533 -13.43362 -13.39292 -13.12664 -12.84639 -12.78607 -12.60822 -12.35579 -12.27285 -12.05600 -11.94618 -11.68295 -11.57507 -11.51750 -11.44542 -11.16859 -11.02512 -10.68425 -9.69202 -9.50877 -8.86390 -7.83656 -5.17875 -0.70733 0.16040 1.02327 1.34214 1.47797 1.48177 1.57010 1.78866 2.05214 2.51145 2.97133 3.09421 3.33714 3.37364 3.55342 3.60958 3.87760 3.94195 3.98052 4.04814 4.09047 4.13573 4.18414 4.36392 4.38825 4.41693 4.55575 4.59206 4.59720 4.62162 4.68755 4.71691 4.78329 4.86222 4.92053 4.99485 5.04928 5.10728 5.14170 5.21732 5.37642 5.44089 5.54045 5.61584 5.69034 5.77194 5.90424 6.20604 6.26354 6.30210 6.96234 7.11393 7.78011 8.42968 9.26844 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.002911 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.503517 B = 9615.106102 C =10019.042807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 C -0.276 4.276 4 C 0.495 3.505 5 O -0.515 6.515 6 O -0.257 6.257 7 C 0.199 3.801 8 C -0.124 4.124 9 C -0.263 4.263 10 C 0.584 3.416 11 O -0.566 6.566 12 N -0.575 5.575 13 C 0.103 3.897 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.154 3.846 17 H 0.057 0.943 18 C 0.146 3.854 19 H 0.078 0.922 20 C -0.134 4.134 21 C 0.191 3.809 22 N -0.617 5.617 23 C -0.233 4.233 24 H 0.082 0.918 25 C -0.063 4.063 26 N -0.949 5.949 27 Si 0.972 3.028 28 H -0.288 1.288 29 H -0.299 1.299 30 H -0.268 1.268 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.183 0.817 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.004 0.996 47 H 0.014 0.986 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.977 17.124 -1.774 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.067 3.933 3 C -0.295 4.295 4 C 0.350 3.650 5 O -0.408 6.408 6 O -0.166 6.166 7 C 0.149 3.851 8 C -0.179 4.179 9 C -0.267 4.267 10 C 0.372 3.628 11 O -0.445 6.445 12 N -0.305 5.305 13 C -0.018 4.018 14 C -0.162 4.162 15 C -0.159 4.159 16 C 0.047 3.953 17 H 0.075 0.925 18 C 0.041 3.959 19 H 0.096 0.904 20 C -0.173 4.173 21 C 0.065 3.935 22 N -0.342 5.342 23 C -0.362 4.362 24 H 0.100 0.900 25 C -0.256 4.256 26 N -0.598 5.598 27 Si 0.801 3.199 28 H -0.215 1.215 29 H -0.226 1.226 30 H -0.193 1.193 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.200 0.800 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.023 0.977 47 H 0.032 0.968 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.187 17.151 -2.254 20.075 hybrid contribution -0.720 -1.349 0.238 1.548 sum 9.467 15.802 -2.015 18.530 Atomic orbital electron populations 1.21151 0.87724 1.04770 1.05209 1.20414 0.98365 0.89819 0.84712 1.22259 0.91207 1.01082 1.14916 1.19615 0.89139 0.80424 0.75829 1.90995 1.71685 1.27087 1.51034 1.83396 1.44882 1.14785 1.73495 1.23112 0.90231 0.85684 0.86089 1.21337 1.02274 0.87717 1.06600 1.19689 0.93090 0.94850 1.19114 1.17776 0.78255 0.83419 0.83367 1.90834 1.55927 1.65307 1.32390 1.47568 1.55363 1.20961 1.06566 1.22108 1.00913 0.95786 0.83011 1.21904 0.98222 0.94810 1.01231 1.21910 0.99363 0.97179 0.97482 1.21512 0.90780 0.89108 0.93920 0.92513 1.21364 0.91557 0.83355 0.99610 0.90409 1.22936 0.95841 0.97660 1.00840 1.20855 0.87567 0.88401 0.96657 1.44930 1.01533 1.07831 1.79925 1.19374 0.93352 0.86871 1.36619 0.89994 1.25576 0.95169 1.02294 1.02568 1.70165 0.97204 1.38074 1.54362 0.85153 0.77062 0.79731 0.77969 1.21488 1.22622 1.19294 0.87207 0.87599 0.91913 0.79971 0.86766 0.85879 0.88295 0.89685 0.88022 0.88259 0.90497 0.93225 0.93141 0.89829 0.91209 0.97735 0.96771 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.67 71.24 0.69 -1.07 16 2 C 0.07 1.12 5.93 -19.50 -0.12 1.00 16 3 C -0.28 -4.59 9.64 22.38 0.22 -4.38 16 4 C 0.49 11.05 7.93 68.46 0.54 11.59 16 5 O -0.51 -15.05 17.93 18.71 0.34 -14.72 16 6 O -0.26 -5.13 9.81 25.83 0.25 -4.87 16 7 C 0.20 3.36 6.78 25.53 0.17 3.54 16 8 C -0.12 -1.52 9.80 71.24 0.70 -0.82 16 9 C -0.26 -5.02 3.59 -20.09 -0.07 -5.09 16 10 C 0.58 14.32 4.07 86.69 0.35 14.68 16 11 O -0.57 -18.80 16.42 -4.02 -0.07 -18.86 16 12 N -0.57 -13.48 2.70 -798.21 -2.16 -15.64 16 13 C 0.10 1.74 6.05 86.48 0.52 2.26 16 14 C -0.12 -2.22 6.10 30.66 0.19 -2.03 16 15 C -0.12 -3.48 5.10 30.51 0.16 -3.33 16 16 C 0.15 5.51 3.59 45.07 0.16 5.67 16 17 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 18 C 0.15 4.72 3.11 46.13 0.14 4.86 16 19 H 0.08 2.97 6.94 -2.39 -0.02 2.95 16 20 C -0.13 -4.56 6.08 31.61 0.19 -4.37 16 21 C 0.19 8.95 5.19 86.79 0.45 9.40 16 22 N -0.62 -29.44 2.91 -667.23 -1.94 -31.39 16 23 C -0.23 -12.41 10.28 84.03 0.86 -11.55 16 24 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 25 C -0.06 -3.47 5.48 84.86 0.47 -3.00 16 26 N -0.95 -55.72 10.38 21.65 0.22 -55.50 16 27 Si 0.97 44.64 29.56 68.60 2.03 46.67 16 28 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 29 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 30 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 0.97 8.09 -2.39 -0.02 0.95 16 33 H 0.06 1.14 7.18 -2.39 -0.02 1.13 16 34 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 1.38 6.96 -2.38 -0.02 1.36 16 38 H 0.08 1.33 7.53 -2.39 -0.02 1.31 16 39 H 0.10 1.29 6.07 -2.38 -0.01 1.27 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 42 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.05 1.62 7.12 -2.39 -0.02 1.61 16 44 H 0.08 2.48 6.81 -2.39 -0.02 2.46 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.00 0.24 7.51 -2.39 -0.02 0.22 16 47 H 0.01 0.74 7.42 -2.39 -0.02 0.73 16 48 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -73.33 380.39 5.28 -68.04 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.98 Total: 8.90 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 5.63 Total: 17.36 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -3.87 Total: -102.52 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: 0.52 Total: -38.45 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -73.33 5.28 -68.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049581883.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.969 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds