Wall clock time and date at job start Sat Apr 11 2020 07:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30871 * 126.20116 * 2 1 4 4 C 1.34576 * 107.28664 * 180.11321 * 3 2 1 5 5 C 1.47833 * 126.02384 * 179.89477 * 4 3 2 6 6 O 1.21553 * 120.00291 * 179.69311 * 5 4 3 7 7 N 1.34783 * 119.99572 * 359.69147 * 5 4 3 8 8 C 1.47428 * 125.64363 * 180.02562 * 7 5 4 9 9 C 1.54905 * 104.83005 * 204.09303 * 8 7 5 10 10 H 1.09004 * 111.00717 * 81.06589 * 9 8 7 11 11 C 1.52998 * 111.00757 * 204.91596 * 9 8 7 12 12 C 1.55162 * 101.58494 * 322.99378 * 9 8 7 13 13 H 1.08995 * 110.86872 * 277.06330 * 12 9 8 14 14 N 1.46499 * 110.72136 * 153.86398 * 12 9 8 15 15 C 1.36931 * 120.00122 * 160.02424 * 14 12 9 16 16 H 1.08002 * 120.00098 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00429 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99535 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00187 * 180.27849 * 17 15 14 20 20 H 1.48501 * 109.46922 * 269.71949 * 19 17 15 21 21 H 1.48496 * 109.47354 * 29.72145 * 19 17 15 22 22 H 1.48501 * 109.47428 * 149.72253 * 19 17 15 23 23 C 1.47017 * 125.65073 * 359.97438 * 7 5 4 24 24 N 1.31555 * 107.95421 * 359.63531 * 4 3 2 25 25 N 1.28859 * 108.71140 * 0.22314 * 24 4 3 26 26 C 1.40095 * 125.77252 * 180.02562 * 25 24 4 27 27 N 1.33633 * 125.59806 * 179.72050 * 26 25 24 28 28 C 1.30801 * 109.79642 * 179.81491 * 27 26 25 29 29 N 1.34445 * 108.19061 * 0.44092 * 28 27 26 30 30 H 0.97002 * 126.76530 * 179.73249 * 29 28 27 31 31 N 1.31151 * 125.60123 * 0.02562 * 26 25 24 32 32 H 1.09001 * 109.47025 * 270.29465 * 1 2 3 33 33 H 1.08999 * 109.47503 * 30.29304 * 1 2 3 34 34 H 1.09003 * 109.47476 * 150.29658 * 1 2 3 35 35 H 1.09001 * 110.36863 * 322.93452 * 8 7 5 36 36 H 1.09000 * 110.36244 * 85.14936 * 8 7 5 37 37 H 1.09000 * 109.47369 * 172.19661 * 11 9 8 38 38 H 1.08999 * 109.47009 * 292.20242 * 11 9 8 39 39 H 1.09002 * 109.46507 * 52.19707 * 11 9 8 40 40 H 0.97001 * 119.99790 * 340.01941 * 14 12 9 41 41 H 0.97005 * 119.99717 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.88283 * 59.55899 * 23 7 5 43 43 H 1.09004 * 110.01221 * 298.46326 * 23 7 5 44 44 H 1.07995 * 125.90458 * 180.15158 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2799 1.0561 0.0000 4 6 3.5530 0.6198 -0.0025 5 6 4.7631 1.4691 -0.0057 6 8 5.8653 0.9566 -0.0022 7 7 4.6440 2.8116 -0.0125 8 6 5.7616 3.7732 -0.0168 9 6 5.1702 5.0710 0.5877 10 1 5.1484 5.0204 1.6764 11 6 5.9476 6.3006 0.1137 12 6 3.7336 5.0613 0.0017 13 1 3.7231 5.4732 -1.0074 14 7 2.8143 5.8003 0.8707 15 6 1.6268 6.2660 0.3727 16 1 1.3677 6.0883 -0.6606 17 6 0.7560 6.9667 1.1959 18 7 1.0715 7.1829 2.4553 19 14 -0.8674 7.5953 0.5185 20 1 -0.6805 8.9654 -0.0227 21 1 -1.3336 6.6941 -0.5658 22 1 -1.8787 7.6261 1.6055 23 6 3.3784 3.5596 -0.0179 24 7 3.5310 -0.6955 0.0039 25 7 2.3037 -1.0884 0.0056 26 6 1.8703 -2.4206 0.0125 27 7 0.5964 -2.8242 0.0195 28 6 0.5457 -4.1312 0.0208 29 7 1.8058 -4.6001 0.0243 30 1 2.0789 -5.5308 0.0296 31 7 2.6482 -3.4765 0.0189 32 1 -0.3633 0.0053 1.0277 33 1 -0.3634 0.8873 -0.5184 34 1 -0.3634 -0.8926 -0.5092 35 1 6.5807 3.4056 0.6014 36 1 6.1059 3.9499 -1.0357 37 1 5.4315 7.2042 0.4384 38 1 6.9509 6.2824 0.5392 39 1 6.0140 6.2912 -0.9742 40 1 3.0468 5.9595 1.7988 41 1 0.4628 7.6722 3.0307 42 1 2.7938 3.3055 0.8663 43 1 2.8101 3.3247 -0.9179 44 1 -0.3529 -4.7302 0.0236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054954664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:00 Heat of formation + Delta-G solvation = 190.578279 kcal Electronic energy + Delta-G solvation = -30103.698487 eV Core-core repulsion = 25903.753777 eV Total energy + Delta-G solvation = -4199.944710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.85618 -42.72119 -39.62333 -37.45601 -35.10854 -34.01920 -33.59782 -32.55471 -32.33258 -31.31223 -30.60774 -28.21255 -27.45935 -26.98821 -24.84316 -23.87409 -23.48662 -22.66903 -21.32472 -20.70689 -19.85583 -19.31181 -19.11896 -17.67623 -17.37726 -17.03712 -16.71921 -15.97549 -15.76327 -15.56553 -15.26199 -14.55932 -14.22279 -13.97355 -13.46028 -13.24094 -13.15316 -13.06240 -12.96422 -12.56707 -12.54431 -12.37368 -12.16056 -11.94372 -11.66568 -11.43668 -11.07546 -10.93434 -10.84408 -10.76823 -10.72080 -10.55280 -10.37252 -10.20070 -10.11252 -10.06361 -9.84016 -9.64821 -9.40506 -8.90665 -8.25438 -6.99263 -5.76316 -3.06028 0.50569 1.13940 1.26579 1.94678 2.16382 2.46620 2.99493 3.45025 3.46928 3.50664 3.52094 3.52720 3.87364 4.06144 4.38417 4.56675 4.64626 4.98525 5.06555 5.24812 5.26084 5.29776 5.47891 5.53305 5.64788 5.69824 5.76356 5.85778 5.90561 5.95752 6.01117 6.07241 6.11598 6.28245 6.31545 6.36833 6.44636 6.55085 6.63477 6.69865 6.74720 7.04819 7.12156 7.70003 7.74438 7.90539 8.32170 8.41312 9.53155 10.07626 10.42856 11.45889 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.003118 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.148942 B = 8976.572340 C =11298.991975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.258 3.742 3 N -0.454 5.454 4 C 0.175 3.825 5 C 0.625 3.375 6 O -0.530 6.530 7 N -0.591 5.591 8 C 0.117 3.883 9 C -0.114 4.114 10 H 0.085 0.915 11 C -0.133 4.133 12 C 0.174 3.826 13 H 0.066 0.934 14 N -0.710 5.710 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.906 3.094 20 H -0.291 1.291 21 H -0.281 1.281 22 H -0.292 1.292 23 C 0.082 3.918 24 N -0.243 5.243 25 N -0.236 5.236 26 C 0.457 3.543 27 N -0.535 5.535 28 C 0.294 3.706 29 N -0.469 5.469 30 H 0.452 0.548 31 N -0.273 5.273 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 -22.647 -5.612 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.017 4.017 3 N -0.180 5.180 4 C -0.107 4.107 5 C 0.408 3.592 6 O -0.404 6.404 7 N -0.324 5.324 8 C -0.005 4.005 9 C -0.134 4.134 10 H 0.103 0.897 11 C -0.190 4.190 12 C 0.062 3.938 13 H 0.084 0.916 14 N -0.350 5.350 15 C -0.371 4.371 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.206 1.206 22 H -0.219 1.219 23 C -0.043 4.043 24 N -0.078 5.078 25 N -0.029 5.029 26 C 0.088 3.912 27 N -0.266 5.266 28 C -0.006 4.006 29 N -0.190 5.190 30 H 0.300 0.700 31 N -0.106 5.106 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.220 -22.613 -5.681 23.317 hybrid contribution -1.230 -0.648 0.076 1.392 sum -1.010 -23.261 -5.605 23.948 Atomic orbital electron populations 1.20573 0.81936 1.05745 1.05194 1.25515 0.98147 0.80050 0.98033 1.71783 1.00150 1.26014 1.20026 1.23891 0.93335 0.88138 1.05286 1.15762 0.84744 0.80585 0.78105 1.90804 1.25383 1.73063 1.51179 1.48207 1.10737 1.03355 1.70075 1.22359 0.89225 0.87856 1.01097 1.22640 0.96609 0.93142 1.00999 0.89675 1.21608 0.98999 0.97726 1.00714 1.21320 0.88036 0.89119 0.95297 0.91624 1.42335 1.18805 1.63290 1.10570 1.19235 0.94516 1.27988 0.95374 0.90985 1.24737 0.98875 1.01243 0.95775 1.69668 1.37399 1.45877 1.04958 0.86204 0.83678 0.78736 0.77653 1.21804 1.20624 1.21853 1.23449 0.83854 0.93846 1.03126 1.74608 0.99153 1.13974 1.20071 1.43157 1.04581 1.02579 1.52629 1.19354 0.87621 0.83350 1.00926 1.70218 1.18357 1.11205 1.26834 1.26211 0.90707 0.89731 0.93914 1.48059 1.04857 1.09642 1.56426 0.69981 1.78522 1.13904 0.91747 1.26428 0.88788 0.88127 0.87935 0.90592 0.91122 0.91259 0.93176 0.92802 0.77917 0.93500 0.89846 0.91519 0.74357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.84 36.00 0.35 -0.46 16 2 C 0.26 3.92 7.94 -155.25 -1.23 2.68 16 3 N -0.45 -8.14 8.86 -8.47 -0.08 -8.22 16 4 C 0.17 3.34 7.80 -156.30 -1.22 2.12 16 5 C 0.62 12.35 7.86 -12.33 -0.10 12.25 16 6 O -0.53 -11.44 17.34 5.32 0.09 -11.35 16 7 N -0.59 -10.78 3.33 -171.63 -0.57 -11.35 16 8 C 0.12 1.85 6.37 -2.53 -0.02 1.83 16 9 C -0.11 -1.86 3.25 -88.47 -0.29 -2.15 16 10 H 0.08 1.47 8.00 -51.93 -0.42 1.05 16 11 C -0.13 -1.89 9.31 37.16 0.35 -1.55 16 12 C 0.17 3.38 3.06 -66.09 -0.20 3.18 16 13 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 14 N -0.71 -17.02 5.18 -51.65 -0.27 -17.29 16 15 C -0.24 -6.38 9.98 -15.06 -0.15 -6.53 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 19 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.08 1.58 5.28 -3.07 -0.02 1.56 16 24 N -0.24 -4.53 12.02 32.08 0.39 -4.15 16 25 N -0.24 -3.73 3.52 -10.92 -0.04 -3.77 16 26 C 0.46 5.85 8.73 -320.53 -2.80 3.06 16 27 N -0.53 -4.76 8.79 -14.87 -0.13 -4.89 16 28 C 0.29 1.13 13.12 -90.67 -1.19 -0.06 16 29 N -0.47 -2.38 7.44 29.53 0.22 -2.16 16 30 H 0.45 0.35 8.96 -182.35 -1.63 -1.28 16 31 N -0.27 -3.21 12.81 30.08 0.39 -2.83 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 0.94 6.30 -51.93 -0.33 0.61 16 35 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 36 H 0.07 1.01 7.99 -51.93 -0.41 0.60 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.39 9.94 7.71 -40.82 -0.31 9.62 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.08 1.79 7.51 -51.93 -0.39 1.40 16 43 H 0.07 1.29 7.75 -51.93 -0.40 0.89 16 44 H 0.24 -0.57 8.06 -52.49 -0.42 -0.99 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -37.88 376.36 -12.04 -49.92 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.81 Total: 4.72 kcal Atomic # 6 Polarization: 22.17 SS G_CDS: -6.60 Total: 15.57 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: 0.63 Total: -81.33 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.88 -12.04 -49.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054954664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.502 kcal (2) G-P(sol) polarization free energy of solvation -37.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds