Wall clock time and date at job start Sat Apr 11 2020 07:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47521 * 2 1 4 4 C 1.53001 * 109.47116 * 120.00691 * 2 1 3 5 5 H 1.08994 * 109.66710 * 56.62214 * 4 2 1 6 6 C 1.50435 * 109.56364 * 296.32252 * 4 2 1 7 7 O 1.21281 * 118.48640 * 47.47505 * 6 4 2 8 8 N 1.33383 * 123.02548 * 227.49073 * 6 4 2 9 9 C 1.45647 * 124.58708 * 4.29970 * 8 6 4 10 10 C 1.52984 * 110.77459 * 338.10412 * 9 8 6 11 11 N 1.47054 * 109.56632 * 176.92369 * 4 2 1 12 12 C 1.34781 * 121.35364 * 342.55405 * 11 4 2 13 13 O 1.21274 * 119.99885 * 5.06843 * 12 11 4 14 14 C 1.50697 * 119.99806 * 185.06917 * 12 11 4 15 15 C 1.50700 * 109.46954 * 179.97438 * 14 12 11 16 16 C 1.38299 * 119.93319 * 269.73163 * 15 14 12 17 17 C 1.38103 * 120.06449 * 179.72565 * 16 15 14 18 18 C 1.38871 * 119.93252 * 0.56910 * 17 16 15 19 19 O 1.35753 * 120.06845 * 179.68146 * 18 17 16 20 20 C 1.34830 * 117.00203 * 185.40278 * 19 18 17 21 21 H 1.08004 * 119.99716 * 354.96312 * 20 19 18 22 22 C 1.38654 * 119.99974 * 174.96038 * 20 19 18 23 23 N 1.31552 * 120.00181 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99729 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46948 * 90.00155 * 24 22 20 26 26 H 1.48498 * 109.46604 * 210.00313 * 24 22 20 27 27 H 1.48505 * 109.47089 * 329.99934 * 24 22 20 28 28 C 1.38878 * 119.86497 * 359.70276 * 18 17 16 29 29 C 1.38103 * 119.92767 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47047 * 305.85129 * 1 2 3 31 31 H 1.09003 * 109.47370 * 65.84626 * 1 2 3 32 32 H 1.08991 * 109.47481 * 185.84955 * 1 2 3 33 33 H 1.09005 * 109.47033 * 240.00216 * 2 1 3 34 34 H 1.09001 * 109.46939 * 60.00539 * 3 2 1 35 35 H 1.09001 * 109.47315 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46893 * 300.00239 * 3 2 1 37 37 H 0.97000 * 117.70406 * 184.32851 * 8 6 4 38 38 H 1.09010 * 109.21241 * 98.43473 * 9 8 6 39 39 H 1.08995 * 109.21710 * 217.76392 * 9 8 6 40 40 H 1.09002 * 109.72009 * 166.40122 * 10 9 8 41 41 H 1.09000 * 109.71784 * 287.04723 * 10 9 8 42 42 H 1.08997 * 109.47189 * 300.00115 * 14 12 11 43 43 H 1.09003 * 109.47013 * 60.00104 * 14 12 11 44 44 H 1.07996 * 119.96543 * 359.97418 * 16 15 14 45 45 H 1.08007 * 120.03156 * 180.26578 * 17 16 15 46 46 H 0.97004 * 119.99802 * 179.97438 * 23 22 20 47 47 H 1.07995 * 120.03485 * 180.02562 * 28 18 17 48 48 H 1.07996 * 119.96394 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6299 -1.7307 1.2830 6 6 1.6153 0.0365 2.4773 7 8 0.4609 0.3985 2.5633 8 7 2.4498 0.3291 3.4758 9 6 3.8773 0.0399 3.4719 10 6 4.2014 -1.0797 2.4810 11 7 3.5086 -0.7874 1.2147 12 6 4.1929 -0.5883 0.0706 13 8 3.6053 -0.2589 -0.9378 14 6 5.6880 -0.7752 0.0447 15 6 6.2053 -0.4941 -1.3425 16 6 6.2983 -1.5199 -2.2653 17 6 6.7667 -1.2643 -3.5391 18 6 7.1557 0.0220 -3.8892 19 8 7.6226 0.2751 -5.1386 20 6 8.0873 1.5179 -5.3783 21 1 8.0023 2.2819 -4.6196 22 6 8.6744 1.8150 -6.5987 23 7 8.7776 0.8846 -7.5230 24 14 9.3190 3.5367 -6.9306 25 1 10.7396 3.6236 -6.5072 26 1 9.2160 3.8325 -8.3822 27 1 8.5134 4.5227 -6.1662 28 6 7.0664 1.0489 -2.9585 29 6 6.5919 0.7881 -1.6881 30 1 -0.3633 0.6019 0.8330 31 1 -0.3634 0.4205 -0.9377 32 1 -0.3634 -1.0222 0.1047 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 2.0800 0.7647 4.2596 38 1 4.4247 0.9390 3.1889 39 1 4.1840 -0.2662 4.4720 40 1 5.2772 -1.1202 2.3107 41 1 3.8552 -2.0340 2.8781 42 1 6.1523 -0.0882 0.7522 43 1 5.9308 -1.8011 0.3217 44 1 6.0006 -2.5211 -1.9908 45 1 6.8351 -2.0650 -4.2607 46 1 9.1880 1.0926 -8.3769 47 1 7.3678 2.0504 -3.2280 48 1 6.5219 1.5863 -0.9640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110700396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:34 Heat of formation + Delta-G solvation = -41.720924 kcal Electronic energy + Delta-G solvation = -30991.318136 eV Core-core repulsion = 26820.255017 eV Total energy + Delta-G solvation = -4171.063119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.52731 -39.55403 -38.79537 -36.95464 -36.63702 -35.37982 -33.77706 -32.41812 -31.28516 -30.14810 -29.94180 -27.77679 -27.01986 -26.02761 -24.97473 -24.38348 -21.97648 -21.43015 -21.17934 -20.03323 -18.84252 -17.97418 -17.60913 -17.46635 -16.94494 -16.43359 -16.33823 -15.70656 -15.47835 -14.67897 -14.58199 -14.49626 -14.23008 -14.19530 -13.78742 -13.55910 -13.49744 -13.21772 -12.99152 -12.83764 -12.70092 -12.53541 -12.50450 -12.15366 -12.01460 -11.90318 -11.57047 -11.29292 -11.16811 -10.94478 -10.84199 -10.75509 -10.73054 -10.61378 -10.42130 -10.19663 -9.54086 -9.32111 -9.09261 -8.82531 -8.70037 -8.14682 -7.16037 -6.43809 -4.02352 2.17154 2.25739 2.28590 2.57322 2.57970 2.92900 3.13969 3.14362 3.19351 3.97846 4.03650 4.16917 4.41933 4.54580 4.62999 4.69973 4.85168 4.88601 4.96372 5.10895 5.17957 5.21224 5.23953 5.27917 5.31340 5.47488 5.59168 5.68933 5.73123 5.78660 5.84728 5.95719 6.03586 6.12205 6.22299 6.25918 6.41147 6.42158 6.43886 6.62951 6.70108 6.90266 6.91966 7.05349 7.15433 7.24819 7.36814 7.46030 7.84246 7.84601 8.01443 8.18081 9.01966 9.72445 10.74292 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018637 B = 0.002380 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.012421 B =11759.791926 C =12102.349995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.095 4.095 3 C -0.133 4.133 4 C 0.142 3.858 5 H 0.100 0.900 6 C 0.517 3.483 7 O -0.536 6.536 8 N -0.721 5.721 9 C 0.094 3.906 10 C 0.092 3.908 11 N -0.625 5.625 12 C 0.515 3.485 13 O -0.493 6.493 14 C -0.078 4.078 15 C -0.172 4.172 16 C -0.058 4.058 17 C -0.192 4.192 18 C 0.158 3.842 19 O -0.178 6.178 20 C -0.391 4.391 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.232 4.232 29 C -0.055 4.055 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.129 0.871 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.398 0.602 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.006 -4.152 24.293 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.114 4.114 3 C -0.190 4.190 4 C 0.036 3.964 5 H 0.117 0.883 6 C 0.303 3.697 7 O -0.413 6.413 8 N -0.374 5.374 9 C -0.031 4.031 10 C -0.032 4.032 11 N -0.363 5.363 12 C 0.304 3.696 13 O -0.366 6.366 14 C -0.118 4.118 15 C -0.174 4.174 16 C -0.076 4.076 17 C -0.211 4.211 18 C 0.104 3.896 19 O -0.081 6.081 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.252 4.252 29 C -0.073 4.073 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.146 0.854 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.126 0.874 45 H 0.134 0.866 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.706 -4.042 23.078 24.995 hybrid contribution 0.303 1.053 0.435 1.179 sum -8.404 -2.989 23.513 25.148 Atomic orbital electron populations 1.22170 0.94941 1.01962 1.02730 1.21803 0.95380 0.97515 0.96692 1.21869 1.01517 0.95051 1.00601 1.21539 0.80472 0.99815 0.94546 0.88280 1.20488 0.85538 0.79306 0.84333 1.90702 1.18508 1.53206 1.78861 1.45418 1.09096 1.62474 1.20368 1.21777 0.81386 0.99290 1.00686 1.22086 0.99649 0.97795 0.83675 1.48353 1.05634 1.73258 1.09060 1.21045 0.90224 0.76226 0.82070 1.90684 1.68787 1.43513 1.33634 1.20470 0.90555 1.03237 0.97549 1.18583 1.09997 0.94443 0.94329 1.20378 0.97406 0.97385 0.92477 1.20152 1.08977 0.94915 0.97039 1.19388 0.91738 0.93028 0.85456 1.83977 1.67867 1.33042 1.23212 1.21326 1.38623 0.85353 1.01421 0.89081 1.25284 0.96646 0.99807 0.94774 1.70039 1.41080 1.33093 1.05565 0.85721 0.79212 0.80385 0.78173 1.19890 1.20257 1.19188 1.21097 1.09706 0.99979 0.94378 1.20478 0.96490 0.94878 0.95480 0.90072 0.92947 0.93473 0.85374 0.94501 0.92103 0.92584 0.76632 0.91081 0.89200 0.87226 0.90119 0.89126 0.88874 0.87428 0.86590 0.92032 0.85650 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.61 37.15 0.32 -1.67 16 2 C -0.10 -1.23 2.15 -90.62 -0.19 -1.42 16 3 C -0.13 -1.85 7.99 37.16 0.30 -1.55 16 4 C 0.14 1.50 2.92 -68.91 -0.20 1.30 16 5 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 6 C 0.52 5.42 5.99 -11.73 -0.07 5.35 16 7 O -0.54 -7.28 14.25 5.56 0.08 -7.20 16 8 N -0.72 -5.04 5.42 -61.32 -0.33 -5.38 16 9 C 0.09 0.38 7.34 -4.51 -0.03 0.35 16 10 C 0.09 0.43 6.44 -3.63 -0.02 0.40 16 11 N -0.62 -5.64 2.83 -166.55 -0.47 -6.12 16 12 C 0.51 6.19 6.46 -10.98 -0.07 6.11 16 13 O -0.49 -7.93 10.36 5.56 0.06 -7.88 16 14 C -0.08 -0.84 4.22 -29.04 -0.12 -0.96 16 15 C -0.17 -2.76 4.38 -104.58 -0.46 -3.22 16 16 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 17 C -0.19 -4.06 9.99 -39.40 -0.39 -4.45 16 18 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 19 O -0.18 -5.12 9.76 0.04 0.00 -5.12 16 20 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 21 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 24 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16 29 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 30 H 0.08 1.11 5.52 -51.93 -0.29 0.82 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.13 1.93 5.52 -53.15 -0.29 1.63 16 34 H 0.04 0.50 6.98 -51.93 -0.36 0.14 16 35 H 0.06 0.90 5.44 -51.93 -0.28 0.62 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 2.34 8.80 -40.82 -0.36 1.98 16 38 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 39 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.11 0.31 6.04 -51.93 -0.31 -0.01 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.75 7.61 -51.93 -0.40 0.35 16 43 H 0.09 0.77 7.96 -51.93 -0.41 0.35 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 48 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -35.10 378.05 -8.02 -43.12 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.64 Total: 6.07 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.14 Total: -14.11 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.05 Total: -36.19 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.14 Total: -20.19 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.10 -8.02 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110700396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.400 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds