Wall clock time and date at job start Sat Apr 11 2020 07:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47521 * 2 1 4 4 C 1.53001 * 109.47116 * 120.00691 * 2 1 3 5 5 H 1.08994 * 109.66710 * 56.62214 * 4 2 1 6 6 C 1.50435 * 109.56364 * 296.32252 * 4 2 1 7 7 O 1.21281 * 118.48640 * 47.47505 * 6 4 2 8 8 N 1.33383 * 123.02548 * 227.49073 * 6 4 2 9 9 C 1.45647 * 124.58708 * 4.29970 * 8 6 4 10 10 C 1.52984 * 110.77459 * 338.10412 * 9 8 6 11 11 N 1.47054 * 109.56632 * 176.92369 * 4 2 1 12 12 C 1.34781 * 121.35364 * 342.55405 * 11 4 2 13 13 O 1.21274 * 119.99885 * 5.06843 * 12 11 4 14 14 C 1.50697 * 119.99806 * 185.06917 * 12 11 4 15 15 C 1.50700 * 109.46954 * 179.97438 * 14 12 11 16 16 C 1.38299 * 119.93319 * 269.73163 * 15 14 12 17 17 C 1.38103 * 120.06449 * 179.72565 * 16 15 14 18 18 C 1.38871 * 119.93252 * 0.56910 * 17 16 15 19 19 O 1.35753 * 120.06845 * 179.68146 * 18 17 16 20 20 C 1.34830 * 117.00203 * 185.40278 * 19 18 17 21 21 H 1.08004 * 119.99716 * 354.96312 * 20 19 18 22 22 C 1.38654 * 119.99974 * 174.96038 * 20 19 18 23 23 N 1.31552 * 120.00181 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99729 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46948 * 90.00155 * 24 22 20 26 26 H 1.48498 * 109.46604 * 210.00313 * 24 22 20 27 27 H 1.48505 * 109.47089 * 329.99934 * 24 22 20 28 28 C 1.38878 * 119.86497 * 359.70276 * 18 17 16 29 29 C 1.38103 * 119.92767 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47047 * 305.85129 * 1 2 3 31 31 H 1.09003 * 109.47370 * 65.84626 * 1 2 3 32 32 H 1.08991 * 109.47481 * 185.84955 * 1 2 3 33 33 H 1.09005 * 109.47033 * 240.00216 * 2 1 3 34 34 H 1.09001 * 109.46939 * 60.00539 * 3 2 1 35 35 H 1.09001 * 109.47315 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46893 * 300.00239 * 3 2 1 37 37 H 0.97000 * 117.70406 * 184.32851 * 8 6 4 38 38 H 1.09010 * 109.21241 * 98.43473 * 9 8 6 39 39 H 1.08995 * 109.21710 * 217.76392 * 9 8 6 40 40 H 1.09002 * 109.72009 * 166.40122 * 10 9 8 41 41 H 1.09000 * 109.71784 * 287.04723 * 10 9 8 42 42 H 1.08997 * 109.47189 * 300.00115 * 14 12 11 43 43 H 1.09003 * 109.47013 * 60.00104 * 14 12 11 44 44 H 1.07996 * 119.96543 * 359.97418 * 16 15 14 45 45 H 1.08007 * 120.03156 * 180.26578 * 17 16 15 46 46 H 0.97004 * 119.99802 * 179.97438 * 23 22 20 47 47 H 1.07995 * 120.03485 * 180.02562 * 28 18 17 48 48 H 1.07996 * 119.96394 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6299 -1.7307 1.2830 6 6 1.6153 0.0365 2.4773 7 8 0.4609 0.3985 2.5633 8 7 2.4498 0.3291 3.4758 9 6 3.8773 0.0399 3.4719 10 6 4.2014 -1.0797 2.4810 11 7 3.5086 -0.7874 1.2147 12 6 4.1929 -0.5883 0.0706 13 8 3.6053 -0.2589 -0.9378 14 6 5.6880 -0.7752 0.0447 15 6 6.2053 -0.4941 -1.3425 16 6 6.2983 -1.5199 -2.2653 17 6 6.7667 -1.2643 -3.5391 18 6 7.1557 0.0220 -3.8892 19 8 7.6226 0.2751 -5.1386 20 6 8.0873 1.5179 -5.3783 21 1 8.0023 2.2819 -4.6196 22 6 8.6744 1.8150 -6.5987 23 7 8.7776 0.8846 -7.5230 24 14 9.3190 3.5367 -6.9306 25 1 10.7396 3.6236 -6.5072 26 1 9.2160 3.8325 -8.3822 27 1 8.5134 4.5227 -6.1662 28 6 7.0664 1.0489 -2.9585 29 6 6.5919 0.7881 -1.6881 30 1 -0.3633 0.6019 0.8330 31 1 -0.3634 0.4205 -0.9377 32 1 -0.3634 -1.0222 0.1047 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 2.0800 0.7647 4.2596 38 1 4.4247 0.9390 3.1889 39 1 4.1840 -0.2662 4.4720 40 1 5.2772 -1.1202 2.3107 41 1 3.8552 -2.0340 2.8781 42 1 6.1523 -0.0882 0.7522 43 1 5.9308 -1.8011 0.3217 44 1 6.0006 -2.5211 -1.9908 45 1 6.8351 -2.0650 -4.2607 46 1 9.1880 1.0926 -8.3769 47 1 7.3678 2.0504 -3.2280 48 1 6.5219 1.5863 -0.9640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110700396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:33 Heat of formation + Delta-G solvation = -67.077781 kcal Electronic energy + Delta-G solvation = -30992.417692 eV Core-core repulsion = 26820.255017 eV Total energy + Delta-G solvation = -4172.162674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.32327 -40.82597 -40.12679 -38.27176 -37.59476 -36.35827 -34.61835 -34.30519 -32.62527 -31.72934 -30.54063 -28.86290 -28.13715 -27.51201 -26.49923 -24.93052 -23.59717 -22.64170 -22.15751 -21.08103 -19.83111 -19.57472 -18.80497 -18.31435 -18.15165 -17.25641 -17.14982 -16.61255 -16.48744 -16.24055 -16.03709 -15.74173 -15.48531 -15.24235 -15.06135 -14.94833 -14.64186 -14.36602 -14.23673 -13.94516 -13.65116 -13.60550 -13.56286 -13.29911 -13.08359 -12.93368 -12.82019 -12.61346 -12.43689 -12.27270 -12.20989 -12.11351 -12.08894 -11.86068 -11.78987 -11.15026 -11.10071 -10.78095 -10.10941 -9.97657 -9.71520 -9.53587 -8.85220 -8.46398 -6.14249 0.66351 0.71118 1.34151 1.43403 1.49488 1.51833 1.72024 1.82948 2.18183 2.28532 2.85230 3.18728 3.41964 3.55732 3.65883 3.87848 3.90679 3.99732 4.09153 4.10073 4.19473 4.23131 4.27664 4.46144 4.50765 4.55563 4.62398 4.64509 4.73959 4.77888 4.80779 4.84678 4.94596 5.00520 5.02870 5.13171 5.16804 5.23919 5.26719 5.34001 5.35053 5.61400 5.66320 5.75740 5.82275 5.84024 6.04964 6.23323 6.27961 6.43869 6.98550 7.15212 7.32500 7.81106 8.77248 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018637 B = 0.002380 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.012421 B =11759.791926 C =12102.349995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.094 4.094 3 C -0.122 4.122 4 C 0.144 3.856 5 H 0.110 0.890 6 C 0.515 3.485 7 O -0.576 6.576 8 N -0.711 5.711 9 C 0.088 3.912 10 C 0.082 3.918 11 N -0.615 5.615 12 C 0.514 3.486 13 O -0.545 6.545 14 C -0.076 4.076 15 C -0.141 4.141 16 C -0.054 4.054 17 C -0.208 4.208 18 C 0.111 3.889 19 O -0.236 6.236 20 C -0.412 4.412 21 H 0.100 0.900 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.018 2.982 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.255 1.255 28 C -0.245 4.245 29 C -0.057 4.057 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.034 0.966 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.405 0.595 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.148 0.852 45 H 0.108 0.892 46 H 0.272 0.728 47 H 0.113 0.887 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 -4.550 29.302 30.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.112 4.112 3 C -0.179 4.179 4 C 0.037 3.963 5 H 0.128 0.872 6 C 0.301 3.699 7 O -0.456 6.456 8 N -0.362 5.362 9 C -0.036 4.036 10 C -0.040 4.040 11 N -0.352 5.352 12 C 0.304 3.696 13 O -0.423 6.423 14 C -0.115 4.115 15 C -0.142 4.142 16 C -0.072 4.072 17 C -0.227 4.227 18 C 0.062 3.938 19 O -0.143 6.143 20 C -0.488 4.488 21 H 0.117 0.883 22 C -0.221 4.221 23 N -0.561 5.561 24 Si 0.837 3.163 25 H -0.185 1.185 26 H -0.196 1.196 27 H -0.179 1.179 28 C -0.265 4.265 29 C -0.075 4.075 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.241 0.759 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.166 0.834 45 H 0.127 0.873 46 H 0.081 0.919 47 H 0.131 0.869 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.197 -4.467 28.220 29.724 hybrid contribution -0.006 1.003 -0.719 1.234 sum -8.203 -3.464 27.501 28.907 Atomic orbital electron populations 1.22102 0.95025 1.02264 1.01868 1.21646 0.95320 0.96812 0.97450 1.21749 1.00897 0.95743 0.99532 1.21384 0.81542 0.99978 0.93377 0.87221 1.20427 0.85398 0.79277 0.84842 1.90692 1.20283 1.54905 1.79726 1.45430 1.10231 1.61078 1.19446 1.22099 0.79190 0.99450 1.02860 1.22564 1.01036 0.98922 0.81434 1.48312 1.04976 1.71908 1.09981 1.21181 0.90616 0.75663 0.82120 1.90715 1.69776 1.46131 1.35656 1.20614 0.89518 1.06966 0.94397 1.19215 1.05429 0.92864 0.96683 1.20870 0.95654 0.99888 0.90819 1.20444 1.09557 0.93756 0.98955 1.19958 0.93581 0.95084 0.85223 1.83936 1.70899 1.33546 1.25903 1.21803 1.39010 0.85861 1.02168 0.88297 1.26588 0.96714 1.04670 0.94161 1.70188 1.43630 1.35894 1.06388 0.84597 0.78971 0.74480 0.78215 1.18486 1.19636 1.17864 1.21211 1.10478 0.98916 0.95861 1.20904 0.95286 0.97006 0.94352 0.91153 0.93594 0.92517 0.87368 0.94732 0.92681 0.94365 0.75875 0.90717 0.85219 0.84218 0.88052 0.85092 0.84686 0.83450 0.87340 0.91881 0.86899 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 8.61 71.98 0.62 -3.23 16 2 C -0.09 -2.35 2.15 -10.79 -0.02 -2.38 16 3 C -0.12 -3.35 7.99 71.98 0.58 -2.78 16 4 C 0.14 2.65 2.92 44.06 0.13 2.78 16 5 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 6 C 0.51 9.52 5.99 87.79 0.53 10.05 16 7 O -0.58 -15.03 14.25 -3.03 -0.04 -15.08 16 8 N -0.71 -7.19 5.42 -467.09 -2.53 -9.72 16 9 C 0.09 0.19 7.34 86.53 0.63 0.83 16 10 C 0.08 0.23 6.44 86.23 0.56 0.78 16 11 N -0.62 -8.30 2.83 -799.22 -2.26 -10.56 16 12 C 0.51 10.13 6.46 87.66 0.57 10.70 16 13 O -0.55 -16.49 10.36 -3.01 -0.03 -16.52 16 14 C -0.08 -1.14 4.22 29.10 0.12 -1.01 16 15 C -0.14 -3.97 4.38 -19.83 -0.09 -4.06 16 16 C -0.05 -1.76 9.69 22.25 0.22 -1.55 16 17 C -0.21 -9.03 9.99 22.39 0.22 -8.80 16 18 C 0.11 5.71 6.65 22.58 0.15 5.86 16 19 O -0.24 -14.65 9.76 -22.77 -0.22 -14.88 16 20 C -0.41 -24.69 9.49 67.92 0.64 -24.05 16 21 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 22 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 23 N -0.92 -57.88 13.67 21.61 0.30 -57.59 16 24 Si 1.02 43.82 29.55 68.60 2.03 45.85 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 28 C -0.25 -10.92 9.17 22.39 0.21 -10.72 16 29 C -0.06 -1.93 9.69 22.25 0.22 -1.71 16 30 H 0.07 1.94 5.52 -2.39 -0.01 1.93 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 3.25 5.52 -21.74 -0.12 3.13 16 34 H 0.03 0.93 6.98 -2.39 -0.02 0.91 16 35 H 0.05 1.56 5.44 -2.39 -0.01 1.54 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.41 3.37 8.80 -92.71 -0.82 2.55 16 38 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.13 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.14 -0.40 6.04 -2.39 -0.01 -0.41 16 41 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.13 1.07 7.61 -2.39 -0.02 1.05 16 43 H 0.14 1.08 7.96 -2.39 -0.02 1.06 16 44 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 45 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 46 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 47 H 0.11 5.18 5.64 -2.91 -0.02 5.16 16 48 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -87.83 378.05 3.06 -84.77 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.08 Total: 23.96 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 5.74 Total: -30.24 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -4.50 Total: -77.87 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.30 Total: -46.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -87.83 3.06 -84.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110700396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.692 kcal (2) G-P(sol) polarization free energy of solvation -87.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds