Wall clock time and date at job start Sat Apr 11 2020 07:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47224 * 120.00365 * 2 1 3 5 5 H 1.09004 * 109.66215 * 300.30079 * 4 2 1 6 6 C 1.50447 * 109.56811 * 60.59100 * 4 2 1 7 7 O 1.21280 * 118.48664 * 287.14155 * 6 4 2 8 8 N 1.33379 * 123.01905 * 107.11317 * 6 4 2 9 9 C 1.45644 * 124.58954 * 4.32610 * 8 6 4 10 10 C 1.53460 * 110.74169 * 337.97320 * 9 8 6 11 11 N 1.47041 * 109.57117 * 180.02562 * 4 2 1 12 12 C 1.34769 * 121.35659 * 102.88948 * 11 4 2 13 13 O 1.21281 * 119.99998 * 0.02562 * 12 11 4 14 14 C 1.50700 * 120.00294 * 180.02562 * 12 11 4 15 15 C 1.50699 * 109.47130 * 180.02562 * 14 12 11 16 16 C 1.38297 * 119.93359 * 89.99927 * 15 14 12 17 17 C 1.38101 * 120.07198 * 179.97438 * 16 15 14 18 18 C 1.38880 * 119.93052 * 0.02562 * 17 16 15 19 19 O 1.35747 * 120.07077 * 179.97438 * 18 17 16 20 20 C 1.34837 * 117.00140 * 5.53398 * 19 18 17 21 21 H 1.08005 * 119.99591 * 354.94336 * 20 19 18 22 22 C 1.38648 * 120.00285 * 174.94674 * 20 19 18 23 23 N 1.31550 * 120.00164 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99869 * 359.97438 * 22 20 19 25 25 H 1.48510 * 109.47362 * 270.00287 * 24 22 20 26 26 H 1.48502 * 109.47206 * 30.00135 * 24 22 20 27 27 H 1.48502 * 109.47275 * 150.00685 * 24 22 20 28 28 C 1.38877 * 119.85872 * 0.24972 * 18 17 16 29 29 C 1.38100 * 119.93592 * 359.49136 * 28 18 17 30 30 H 1.08992 * 109.47211 * 299.99853 * 1 2 3 31 31 H 1.09003 * 109.46877 * 59.99891 * 1 2 3 32 32 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47066 * 240.00045 * 2 1 3 34 34 H 1.09009 * 109.47129 * 60.00084 * 3 2 1 35 35 H 1.09003 * 109.47366 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47412 * 300.00477 * 3 2 1 37 37 H 0.96998 * 117.70103 * 184.34383 * 8 6 4 38 38 H 1.09003 * 109.22187 * 98.43114 * 9 8 6 39 39 H 1.09008 * 109.21531 * 217.75846 * 9 8 6 40 40 H 1.08997 * 109.85376 * 287.32239 * 10 9 8 41 41 H 1.09001 * 109.84242 * 166.50404 * 10 9 8 42 42 H 1.08993 * 109.47104 * 60.00292 * 14 12 11 43 43 H 1.09001 * 109.46979 * 299.99828 * 14 12 11 44 44 H 1.07997 * 119.96505 * 0.02562 * 16 15 14 45 45 H 1.08004 * 120.03701 * 179.97438 * 17 16 15 46 46 H 0.97004 * 120.00071 * 179.97438 * 23 22 20 47 47 H 1.08006 * 120.03540 * 179.72770 * 28 18 17 48 48 H 1.07994 * 119.97092 * 180.27776 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6740 -0.2131 2.1413 6 6 1.5517 -2.1443 1.2440 7 8 0.3800 -2.3547 1.4757 8 7 2.3481 -3.1851 0.9958 9 6 3.7871 -3.0946 0.7905 10 6 4.1863 -1.6777 0.3570 11 7 3.5104 -0.7221 1.2517 12 6 4.2108 0.1206 2.0363 13 8 3.6286 0.9003 2.7602 14 6 5.7174 0.0942 2.0142 15 6 6.2521 1.1252 2.9745 16 6 6.4954 0.7809 4.2917 17 6 6.9858 1.7233 5.1740 18 6 7.2342 3.0181 4.7376 19 8 7.7158 3.9469 5.6026 20 6 8.0398 3.5209 6.8402 21 1 7.8360 2.5009 7.1308 22 6 8.6346 4.3923 7.7397 23 7 8.9512 3.9766 8.9470 24 14 8.9877 6.1564 7.2368 25 1 10.3454 6.2389 6.6406 26 1 7.9810 6.5974 6.2382 27 1 8.9178 7.0353 8.4318 28 6 6.9834 3.3623 3.4157 29 6 6.4980 2.4140 2.5369 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8901 34 1 1.6766 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.9401 -4.0638 0.9485 38 1 4.2987 -3.3451 1.7199 39 1 4.0843 -3.8023 0.0164 40 1 3.8723 -1.5032 -0.6721 41 1 5.2665 -1.5564 0.4381 42 1 6.0700 0.3177 1.0074 43 1 6.0678 -0.8944 2.3109 44 1 6.3025 -0.2263 4.6304 45 1 7.1753 1.4539 6.2026 46 1 9.3677 4.5862 9.5762 47 1 7.1713 4.3696 3.0743 48 1 6.3070 2.6798 1.5077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110700398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:41 Heat of formation + Delta-G solvation = -67.609223 kcal Electronic energy + Delta-G solvation = -30582.969432 eV Core-core repulsion = 26410.783713 eV Total energy + Delta-G solvation = -4172.185719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.35933 -39.59873 -38.89034 -37.03195 -36.55826 -36.04836 -33.71622 -32.50142 -31.58997 -30.24514 -29.99528 -28.02225 -27.32418 -26.21355 -24.79733 -24.35443 -22.11403 -21.57078 -21.15932 -19.88161 -18.96611 -17.88892 -17.82656 -17.49739 -17.20857 -16.70296 -16.27749 -15.71958 -15.39160 -15.02325 -14.76207 -14.69308 -14.28518 -14.07057 -13.74624 -13.68658 -13.54573 -13.30568 -13.02411 -12.87396 -12.68984 -12.52028 -12.50100 -12.33523 -12.21574 -12.17222 -11.83375 -11.69489 -11.35078 -11.29063 -11.11043 -10.94537 -10.75087 -10.68284 -10.37592 -10.15150 -9.80431 -9.54894 -9.38060 -8.95243 -8.85535 -8.23774 -7.31117 -6.40976 -4.07400 2.08203 2.15910 2.19280 2.50233 2.57742 2.85934 3.22973 3.26123 3.41654 3.95724 4.12958 4.24585 4.34726 4.45146 4.52852 4.55130 4.70493 4.77181 4.85169 4.89459 4.97820 5.07303 5.12556 5.13797 5.16945 5.29319 5.40325 5.47173 5.52010 5.63401 5.66786 5.70781 5.73704 5.79777 5.91708 6.11152 6.13017 6.13782 6.31688 6.32534 6.55885 6.78946 6.81866 6.99113 7.10454 7.21192 7.30622 7.61802 7.75278 7.81001 8.04553 8.08592 8.94366 9.56876 10.66686 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.020274 B = 0.002261 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.718008 B =12382.875587 C =12745.676212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.140 4.140 4 C 0.136 3.864 5 H 0.129 0.871 6 C 0.519 3.481 7 O -0.539 6.539 8 N -0.719 5.719 9 C 0.094 3.906 10 C 0.090 3.910 11 N -0.624 5.624 12 C 0.517 3.483 13 O -0.506 6.506 14 C -0.079 4.079 15 C -0.165 4.165 16 C -0.057 4.057 17 C -0.219 4.219 18 C 0.163 3.837 19 O -0.217 6.217 20 C -0.389 4.389 21 H 0.106 0.894 22 C 0.063 3.937 23 N -0.880 5.880 24 Si 0.905 3.095 25 H -0.273 1.273 26 H -0.259 1.259 27 H -0.282 1.282 28 C -0.191 4.191 29 C -0.060 4.060 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.400 0.600 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.133 0.867 46 H 0.279 0.721 47 H 0.116 0.884 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 -14.607 -22.795 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.197 4.197 4 C 0.029 3.971 5 H 0.147 0.853 6 C 0.305 3.695 7 O -0.415 6.415 8 N -0.371 5.371 9 C -0.032 4.032 10 C -0.033 4.033 11 N -0.361 5.361 12 C 0.306 3.694 13 O -0.379 6.379 14 C -0.118 4.118 15 C -0.166 4.166 16 C -0.075 4.075 17 C -0.239 4.239 18 C 0.111 3.889 19 O -0.122 6.122 20 C -0.464 4.464 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.518 5.518 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.183 1.183 27 H -0.208 1.208 28 C -0.210 4.210 29 C -0.078 4.078 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.150 0.850 46 H 0.089 0.911 47 H 0.134 0.866 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.774 -13.715 -22.001 27.707 hybrid contribution 0.205 0.090 -0.003 0.224 sum -9.569 -13.626 -22.004 27.593 Atomic orbital electron populations 1.21934 0.93476 1.03429 1.02111 1.21278 0.97036 0.97039 0.95751 1.21756 1.01185 0.94434 1.02359 1.21422 0.80735 0.92340 1.02580 0.85343 1.20299 0.86045 0.87557 0.75588 1.90767 1.16965 1.85257 1.48547 1.45361 1.08628 1.10406 1.72727 1.21875 0.80796 0.98072 1.02419 1.22199 0.99619 0.87044 0.94461 1.48435 1.05350 1.38879 1.43472 1.21082 0.90425 0.79280 0.78587 1.90770 1.71327 1.37116 1.38663 1.20456 0.90174 1.00413 1.00796 1.18667 1.09236 0.94404 0.94311 1.20547 0.96523 0.98130 0.92308 1.21222 1.07852 0.93629 1.01148 1.19130 0.92010 0.88314 0.89435 1.83571 1.71827 1.34064 1.22726 1.20775 1.40188 1.00225 0.85258 0.87620 1.24464 0.95392 0.99868 0.94277 1.69645 1.40278 1.36901 1.04946 0.86183 0.79621 0.82666 0.78448 1.19886 1.18322 1.20786 1.20147 1.09428 1.00081 0.91391 1.20378 0.97371 0.92087 0.98002 0.92086 0.92454 0.91070 0.91079 0.91790 0.92639 0.92392 0.76472 0.90871 0.89150 0.90058 0.87222 0.88740 0.88800 0.87610 0.84974 0.91054 0.86551 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.68 37.16 0.32 -1.08 16 2 C -0.09 -0.81 2.55 -90.62 -0.23 -1.04 16 3 C -0.14 -1.34 8.83 37.15 0.33 -1.01 16 4 C 0.14 1.40 2.08 -68.91 -0.14 1.26 16 5 H 0.13 1.71 7.23 -51.93 -0.38 1.33 16 6 C 0.52 5.35 6.87 -11.73 -0.08 5.27 16 7 O -0.54 -7.31 15.50 5.56 0.09 -7.23 16 8 N -0.72 -4.82 5.42 -61.07 -0.33 -5.15 16 9 C 0.09 0.35 7.35 -4.26 -0.03 0.32 16 10 C 0.09 0.40 6.35 -3.35 -0.02 0.38 16 11 N -0.62 -5.56 2.11 -166.22 -0.35 -5.91 16 12 C 0.52 6.32 6.68 -10.99 -0.07 6.24 16 13 O -0.51 -8.70 15.59 5.56 0.09 -8.61 16 14 C -0.08 -0.83 4.20 -29.04 -0.12 -0.95 16 15 C -0.16 -2.61 4.38 -104.57 -0.46 -3.06 16 16 C -0.06 -1.02 9.69 -39.61 -0.38 -1.41 16 17 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 18 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 19 O -0.22 -5.79 8.59 0.04 0.00 -5.79 16 20 C -0.39 -11.06 9.95 30.88 0.31 -10.75 16 21 H 0.11 3.07 5.44 -52.48 -0.29 2.78 16 22 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 23 N -0.88 -25.58 13.96 55.48 0.77 -24.80 16 24 Si 0.91 21.83 28.62 -169.99 -4.86 16.96 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C -0.19 -3.81 9.99 -39.40 -0.39 -4.21 16 29 C -0.06 -1.00 9.69 -39.61 -0.38 -1.39 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.75 5.99 -51.93 -0.31 0.43 16 33 H 0.07 0.53 7.49 -51.92 -0.39 0.14 16 34 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.05 0.56 6.95 -51.93 -0.36 0.20 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.40 2.22 8.80 -40.82 -0.36 1.86 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.08 8.14 -51.92 -0.42 -0.35 16 40 H 0.08 0.28 7.49 -51.93 -0.39 -0.11 16 41 H 0.11 0.28 6.04 -51.93 -0.31 -0.04 16 42 H 0.09 0.73 7.76 -51.93 -0.40 0.32 16 43 H 0.09 0.76 7.83 -51.93 -0.41 0.35 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.13 3.04 5.64 -52.48 -0.30 2.74 16 46 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 48 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -35.14 387.68 -7.67 -42.81 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.83 Total: 3.21 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.08 Total: -11.32 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.09 Total: -35.87 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.17 Total: -21.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.14 -7.67 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110700398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.803 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds