Wall clock time and date at job start Sat Apr 11 2020 07:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47224 * 120.00365 * 2 1 3 5 5 H 1.09004 * 109.66215 * 300.30079 * 4 2 1 6 6 C 1.50447 * 109.56811 * 60.59100 * 4 2 1 7 7 O 1.21280 * 118.48664 * 287.14155 * 6 4 2 8 8 N 1.33379 * 123.01905 * 107.11317 * 6 4 2 9 9 C 1.45644 * 124.58954 * 4.32610 * 8 6 4 10 10 C 1.53460 * 110.74169 * 337.97320 * 9 8 6 11 11 N 1.47041 * 109.57117 * 180.02562 * 4 2 1 12 12 C 1.34769 * 121.35659 * 102.88948 * 11 4 2 13 13 O 1.21281 * 119.99998 * 0.02562 * 12 11 4 14 14 C 1.50700 * 120.00294 * 180.02562 * 12 11 4 15 15 C 1.50699 * 109.47130 * 180.02562 * 14 12 11 16 16 C 1.38297 * 119.93359 * 89.99927 * 15 14 12 17 17 C 1.38101 * 120.07198 * 179.97438 * 16 15 14 18 18 C 1.38880 * 119.93052 * 0.02562 * 17 16 15 19 19 O 1.35747 * 120.07077 * 179.97438 * 18 17 16 20 20 C 1.34837 * 117.00140 * 5.53398 * 19 18 17 21 21 H 1.08005 * 119.99591 * 354.94336 * 20 19 18 22 22 C 1.38648 * 120.00285 * 174.94674 * 20 19 18 23 23 N 1.31550 * 120.00164 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99869 * 359.97438 * 22 20 19 25 25 H 1.48510 * 109.47362 * 270.00287 * 24 22 20 26 26 H 1.48502 * 109.47206 * 30.00135 * 24 22 20 27 27 H 1.48502 * 109.47275 * 150.00685 * 24 22 20 28 28 C 1.38877 * 119.85872 * 0.24972 * 18 17 16 29 29 C 1.38100 * 119.93592 * 359.49136 * 28 18 17 30 30 H 1.08992 * 109.47211 * 299.99853 * 1 2 3 31 31 H 1.09003 * 109.46877 * 59.99891 * 1 2 3 32 32 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47066 * 240.00045 * 2 1 3 34 34 H 1.09009 * 109.47129 * 60.00084 * 3 2 1 35 35 H 1.09003 * 109.47366 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47412 * 300.00477 * 3 2 1 37 37 H 0.96998 * 117.70103 * 184.34383 * 8 6 4 38 38 H 1.09003 * 109.22187 * 98.43114 * 9 8 6 39 39 H 1.09008 * 109.21531 * 217.75846 * 9 8 6 40 40 H 1.08997 * 109.85376 * 287.32239 * 10 9 8 41 41 H 1.09001 * 109.84242 * 166.50404 * 10 9 8 42 42 H 1.08993 * 109.47104 * 60.00292 * 14 12 11 43 43 H 1.09001 * 109.46979 * 299.99828 * 14 12 11 44 44 H 1.07997 * 119.96505 * 0.02562 * 16 15 14 45 45 H 1.08004 * 120.03701 * 179.97438 * 17 16 15 46 46 H 0.97004 * 120.00071 * 179.97438 * 23 22 20 47 47 H 1.08006 * 120.03540 * 179.72770 * 28 18 17 48 48 H 1.07994 * 119.97092 * 180.27776 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6740 -0.2131 2.1413 6 6 1.5517 -2.1443 1.2440 7 8 0.3800 -2.3547 1.4757 8 7 2.3481 -3.1851 0.9958 9 6 3.7871 -3.0946 0.7905 10 6 4.1863 -1.6777 0.3570 11 7 3.5104 -0.7221 1.2517 12 6 4.2108 0.1206 2.0363 13 8 3.6286 0.9003 2.7602 14 6 5.7174 0.0942 2.0142 15 6 6.2521 1.1252 2.9745 16 6 6.4954 0.7809 4.2917 17 6 6.9858 1.7233 5.1740 18 6 7.2342 3.0181 4.7376 19 8 7.7158 3.9469 5.6026 20 6 8.0398 3.5209 6.8402 21 1 7.8360 2.5009 7.1308 22 6 8.6346 4.3923 7.7397 23 7 8.9512 3.9766 8.9470 24 14 8.9877 6.1564 7.2368 25 1 10.3454 6.2389 6.6406 26 1 7.9810 6.5974 6.2382 27 1 8.9178 7.0353 8.4318 28 6 6.9834 3.3623 3.4157 29 6 6.4980 2.4140 2.5369 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8901 34 1 1.6766 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.9401 -4.0638 0.9485 38 1 4.2987 -3.3451 1.7199 39 1 4.0843 -3.8023 0.0164 40 1 3.8723 -1.5032 -0.6721 41 1 5.2665 -1.5564 0.4381 42 1 6.0700 0.3177 1.0074 43 1 6.0678 -0.8944 2.3109 44 1 6.3025 -0.2263 4.6304 45 1 7.1753 1.4539 6.2026 46 1 9.3677 4.5862 9.5762 47 1 7.1713 4.3696 3.0743 48 1 6.3070 2.6798 1.5077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110700398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:39 Heat of formation + Delta-G solvation = -92.521682 kcal Electronic energy + Delta-G solvation = -30584.049718 eV Core-core repulsion = 26410.783713 eV Total energy + Delta-G solvation = -4173.266005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.11556 -40.95135 -40.15965 -38.38915 -37.54931 -36.76331 -34.57177 -34.42904 -32.88505 -31.78801 -30.59485 -29.05653 -28.21177 -27.53241 -26.39283 -24.84960 -23.69840 -22.56755 -22.23549 -20.91613 -19.82241 -19.56951 -19.09330 -18.59015 -18.16172 -17.43176 -17.01105 -16.74364 -16.41684 -16.35359 -15.95892 -15.72643 -15.65902 -15.42767 -15.23827 -14.96359 -14.63330 -14.32338 -14.18737 -14.06473 -13.89382 -13.67173 -13.52529 -13.26305 -13.06443 -13.00327 -12.79673 -12.65863 -12.59025 -12.46095 -12.38846 -12.25330 -12.07163 -11.93147 -11.86412 -11.27285 -11.21858 -10.94060 -10.74580 -10.11708 -9.76793 -9.68454 -8.96527 -8.50691 -6.23118 0.60793 0.62566 1.30125 1.34384 1.41198 1.51367 1.66451 1.77973 2.21388 2.27708 2.77125 3.07798 3.15968 3.38061 3.65882 3.74269 3.86252 3.88578 3.99211 4.05241 4.17192 4.18153 4.24472 4.40034 4.46519 4.48493 4.57967 4.60997 4.68883 4.73432 4.77077 4.83589 4.91352 4.95408 4.98512 5.00782 5.07652 5.24112 5.27277 5.34585 5.37229 5.40208 5.58205 5.75420 5.78037 5.80895 5.92144 6.17935 6.24965 6.37061 6.83792 7.06801 7.21850 7.59117 8.61211 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.020274 B = 0.002261 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.718008 B =12382.875587 C =12745.676212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.134 4.134 4 C 0.137 3.863 5 H 0.088 0.912 6 C 0.516 3.484 7 O -0.583 6.583 8 N -0.707 5.707 9 C 0.087 3.913 10 C 0.079 3.921 11 N -0.613 5.613 12 C 0.517 3.483 13 O -0.570 6.570 14 C -0.076 4.076 15 C -0.137 4.137 16 C -0.064 4.064 17 C -0.241 4.241 18 C 0.118 3.882 19 O -0.247 6.247 20 C -0.399 4.399 21 H 0.079 0.921 22 C 0.009 3.991 23 N -0.925 5.925 24 Si 0.972 3.028 25 H -0.262 1.262 26 H -0.265 1.265 27 H -0.267 1.267 28 C -0.195 4.195 29 C -0.056 4.056 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.407 0.593 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.285 0.715 47 H 0.127 0.873 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 -16.403 -27.904 33.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.192 4.192 4 C 0.029 3.971 5 H 0.106 0.894 6 C 0.302 3.698 7 O -0.463 6.463 8 N -0.358 5.358 9 C -0.037 4.037 10 C -0.042 4.042 11 N -0.349 5.349 12 C 0.307 3.693 13 O -0.448 6.448 14 C -0.115 4.115 15 C -0.138 4.138 16 C -0.082 4.082 17 C -0.260 4.260 18 C 0.069 3.931 19 O -0.155 6.155 20 C -0.476 4.476 21 H 0.096 0.904 22 C -0.189 4.189 23 N -0.566 5.566 24 Si 0.794 3.206 25 H -0.186 1.186 26 H -0.190 1.190 27 H -0.192 1.192 28 C -0.214 4.214 29 C -0.074 4.074 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.243 0.757 38 H 0.096 0.904 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.121 0.879 46 H 0.094 0.906 47 H 0.144 0.856 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.046 -15.604 -27.192 32.630 hybrid contribution -0.172 0.319 1.292 1.342 sum -9.217 -15.285 -25.900 31.455 Atomic orbital electron populations 1.21887 0.94166 1.02579 1.01985 1.21245 0.96417 0.96707 0.95911 1.21698 1.01088 0.94687 1.01680 1.21228 0.81786 0.92376 1.01668 0.89424 1.20273 0.85789 0.88130 0.75602 1.90751 1.18919 1.85800 1.50830 1.45383 1.09910 1.09749 1.70748 1.22218 0.78473 0.98789 1.04183 1.22719 1.01155 0.85869 0.94438 1.48395 1.04665 1.38673 1.43118 1.21303 0.91014 0.78878 0.78069 1.90781 1.72498 1.40020 1.41480 1.20629 0.88609 1.00469 1.01804 1.19294 1.04912 0.95462 0.94108 1.20901 0.95786 0.98522 0.93004 1.21243 1.09424 0.94505 1.00808 1.19705 0.93931 0.88822 0.90644 1.83508 1.74566 1.35149 1.22261 1.20704 1.40684 0.99460 0.86708 0.90386 1.25295 0.95361 1.04074 0.94212 1.69731 1.42231 1.38551 1.06073 0.85201 0.79521 0.77583 0.78288 1.18648 1.18970 1.19218 1.20518 1.08944 1.01615 0.90303 1.20950 0.95307 0.91591 0.99523 0.94065 0.90700 0.92240 0.88415 0.94784 0.92524 0.90729 0.75665 0.90444 0.84954 0.87891 0.84000 0.83913 0.85025 0.85075 0.87899 0.90571 0.85552 0.82684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.68 71.98 0.63 -2.05 16 2 C -0.08 -1.30 2.55 -10.80 -0.03 -1.33 16 3 C -0.13 -2.31 8.83 71.98 0.64 -1.67 16 4 C 0.14 2.65 2.08 44.06 0.09 2.75 16 5 H 0.09 2.46 7.23 -2.39 -0.02 2.44 16 6 C 0.52 9.91 6.87 87.79 0.60 10.51 16 7 O -0.58 -15.94 15.50 -3.03 -0.05 -15.99 16 8 N -0.71 -7.12 5.42 -466.29 -2.53 -9.65 16 9 C 0.09 0.16 7.35 86.69 0.64 0.80 16 10 C 0.08 0.20 6.35 86.38 0.55 0.75 16 11 N -0.61 -8.59 2.11 -798.18 -1.69 -10.27 16 12 C 0.52 10.79 6.68 87.66 0.59 11.37 16 13 O -0.57 -19.08 15.59 -3.03 -0.05 -19.13 16 14 C -0.08 -1.14 4.20 29.10 0.12 -1.02 16 15 C -0.14 -3.82 4.38 -19.83 -0.09 -3.91 16 16 C -0.06 -2.23 9.69 22.25 0.22 -2.02 16 17 C -0.24 -11.01 9.17 22.39 0.21 -10.80 16 18 C 0.12 5.72 6.65 22.58 0.15 5.87 16 19 O -0.25 -13.94 8.59 -22.77 -0.20 -14.13 16 20 C -0.40 -24.34 9.95 67.92 0.68 -23.66 16 21 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 22 C 0.01 0.51 5.49 84.83 0.47 0.98 16 23 N -0.92 -56.57 13.96 21.61 0.30 -56.27 16 24 Si 0.97 46.61 28.62 68.60 1.96 48.57 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 C -0.19 -7.62 9.99 22.39 0.22 -7.40 16 29 C -0.06 -1.67 9.69 22.25 0.22 -1.45 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.24 5.99 -2.39 -0.01 1.22 16 33 H 0.10 1.05 7.49 -2.38 -0.02 1.03 16 34 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.06 0.95 6.95 -2.39 -0.02 0.94 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.41 3.29 8.80 -92.71 -0.82 2.47 16 38 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.13 -0.72 8.14 -2.38 -0.02 -0.74 16 40 H 0.10 -0.05 7.49 -2.39 -0.02 -0.07 16 41 H 0.14 -0.49 6.04 -2.39 -0.01 -0.50 16 42 H 0.14 0.93 7.76 -2.39 -0.02 0.91 16 43 H 0.13 1.13 7.83 -2.39 -0.02 1.12 16 44 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 45 H 0.10 5.22 5.64 -2.91 -0.02 5.21 16 46 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 47 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 48 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -87.97 387.68 3.83 -84.14 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.18 Total: 15.03 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 5.89 Total: -22.29 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -3.91 Total: -76.20 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.29 Total: -49.25 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.96 Total: 48.57 kcal Total: -87.97 3.83 -84.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110700398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.379 kcal (2) G-P(sol) polarization free energy of solvation -87.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds