Wall clock time and date at job start Sat Apr 11 2020 07:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47034 * 2 1 4 4 O 1.33804 * 125.07076 * 269.95459 * 3 2 1 5 5 C 1.34910 * 111.34709 * 180.02562 * 4 3 2 6 6 C 1.38964 * 133.11834 * 179.97438 * 5 4 3 7 7 C 1.37844 * 119.97369 * 180.02562 * 6 5 4 8 8 C 1.38685 * 120.65602 * 0.02562 * 7 6 5 9 9 C 1.37836 * 120.20186 * 0.02562 * 8 7 6 10 10 C 1.39113 * 119.62465 * 359.97438 * 9 8 7 11 11 C 1.36047 * 125.07623 * 89.99825 * 3 2 1 12 12 C 1.47084 * 127.13780 * 359.97438 * 11 3 2 13 13 O 1.21655 * 120.00073 * 269.99537 * 12 11 3 14 14 N 1.34777 * 120.00209 * 89.99536 * 12 11 3 15 15 C 1.46504 * 120.00020 * 0.02562 * 14 12 11 16 16 C 1.46506 * 120.00028 * 179.97438 * 14 12 11 17 17 C 1.52999 * 109.46779 * 90.00395 * 16 14 12 18 18 H 1.08994 * 109.47356 * 59.99871 * 17 16 14 19 19 O 1.42909 * 109.47137 * 299.99866 * 17 16 14 20 20 C 1.52999 * 109.47252 * 180.02562 * 17 16 14 21 21 N 1.46498 * 109.47413 * 185.00108 * 20 17 16 22 22 C 1.36929 * 120.00079 * 179.97438 * 21 20 17 23 23 H 1.07999 * 119.99987 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99997 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00047 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99825 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47604 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47118 * 120.00215 * 26 24 22 29 29 H 1.48505 * 109.47258 * 239.99905 * 26 24 22 30 30 H 1.09007 * 109.47208 * 60.00174 * 1 2 3 31 31 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47281 * 300.00439 * 1 2 3 33 33 H 1.08994 * 109.46842 * 239.99716 * 2 1 3 34 34 H 1.09002 * 109.46767 * 119.99668 * 2 1 3 35 35 H 1.08005 * 120.01545 * 0.02562 * 6 5 4 36 36 H 1.08009 * 119.67009 * 180.27566 * 7 6 5 37 37 H 1.07996 * 119.89836 * 179.97438 * 8 7 6 38 38 H 1.08001 * 120.18909 * 179.97438 * 9 8 7 39 39 H 1.09003 * 109.46701 * 89.99906 * 15 14 12 40 40 H 1.08996 * 109.46645 * 210.00091 * 15 14 12 41 41 H 1.08993 * 109.46600 * 329.99807 * 15 14 12 42 42 H 1.08997 * 109.47130 * 210.00004 * 16 14 12 43 43 H 1.09002 * 109.47134 * 330.00503 * 16 14 12 44 44 H 0.96694 * 113.99928 * 300.00183 * 19 17 16 45 45 H 1.09008 * 109.46745 * 304.99635 * 20 17 16 46 46 H 1.08996 * 109.47366 * 64.99104 * 20 17 16 47 47 H 0.97004 * 119.99902 * 359.97438 * 21 20 17 48 48 H 0.96996 * 119.99903 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2894 2.1454 -1.0951 5 6 2.7265 3.3810 -0.7751 6 6 3.1155 4.4774 -1.5351 7 6 3.5259 5.6365 -0.9121 8 6 3.5562 5.7230 0.4717 9 6 3.1751 4.6455 1.2422 10 6 2.7592 3.4708 0.6240 11 6 2.2929 2.1580 1.1134 12 6 2.1426 1.7346 2.5139 13 8 1.0873 1.9111 3.0929 14 7 3.1740 1.1510 3.1560 15 6 4.4451 0.9390 2.4590 16 6 3.0244 0.7298 4.5512 17 6 2.5138 -0.7117 4.5967 18 1 3.2264 -1.3656 4.0941 19 8 1.2484 -0.7899 3.9372 20 6 2.3570 -1.1515 6.0537 21 7 1.9832 -2.5673 6.0990 22 6 1.7871 -3.1854 7.3050 23 1 1.9083 -2.6293 8.2228 24 6 1.4324 -4.5268 7.3478 25 7 1.2851 -5.2047 6.2293 26 14 1.1656 -5.3702 8.9931 27 1 1.3918 -4.3963 10.0911 28 1 -0.2260 -5.8834 9.0663 29 1 2.1181 -6.5012 9.1299 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0964 4.4213 -2.6135 36 1 3.8229 6.4872 -1.5077 37 1 3.8802 6.6370 0.9470 38 1 3.1991 4.7129 2.3199 39 1 5.0865 1.8089 2.6005 40 1 4.9377 0.0546 2.8630 41 1 4.2565 0.7957 1.3951 42 1 3.9896 0.7894 5.0541 43 1 2.3117 1.3838 5.0537 44 1 0.5641 -0.2322 4.3318 45 1 3.3006 -1.0079 6.5801 46 1 1.5799 -0.5550 6.5316 47 1 1.8747 -3.0669 5.2746 48 1 1.0376 -6.1421 6.2593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717932678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:37 Heat of formation + Delta-G solvation = -43.405896 kcal Electronic energy + Delta-G solvation = -30763.714950 eV Core-core repulsion = 26592.578766 eV Total energy + Delta-G solvation = -4171.136184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.88175 -39.79517 -38.24674 -37.23870 -35.23613 -34.45636 -33.97270 -32.60086 -31.28812 -30.73791 -29.62399 -28.80146 -26.93681 -25.73731 -24.53050 -23.37386 -23.12079 -22.11533 -21.37814 -21.07012 -19.33102 -17.88427 -17.34199 -17.12974 -16.88121 -16.35762 -16.18814 -15.77380 -15.65320 -15.02714 -14.81432 -14.50465 -14.41965 -14.31352 -14.12722 -13.65294 -13.44474 -13.32221 -13.03095 -12.92663 -12.74721 -12.60309 -12.43812 -12.34265 -12.24588 -12.10012 -11.70547 -11.51500 -11.40150 -11.09662 -10.92932 -10.82274 -10.67447 -10.37466 -10.11592 -9.99518 -9.76537 -9.60212 -8.95748 -8.88629 -8.53744 -8.38995 -6.90302 -5.73832 -3.02888 0.54482 1.00180 1.81553 2.27974 2.48100 2.96802 3.37321 3.44379 3.49721 3.52188 4.01343 4.21950 4.56495 4.59424 4.62348 4.77483 4.81733 4.86521 4.93672 4.99137 5.01017 5.04429 5.06645 5.17128 5.27297 5.31761 5.37599 5.52373 5.55286 5.56139 5.67680 5.73966 5.75351 5.79285 5.87990 5.89042 5.99318 6.02951 6.09800 6.14712 6.25093 6.32120 6.43997 6.54505 6.75745 6.83291 7.27733 7.70844 8.11648 8.20658 8.44591 9.56003 10.14012 10.49679 11.48693 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002344 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.913467 B =11943.251185 C =12693.978565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C 0.093 3.907 4 O -0.183 6.183 5 C 0.049 3.951 6 C -0.103 4.103 7 C -0.097 4.097 8 C -0.130 4.130 9 C -0.072 4.072 10 C -0.096 4.096 11 C -0.219 4.219 12 C 0.600 3.400 13 O -0.523 6.523 14 N -0.600 5.600 15 C 0.080 3.920 16 C 0.084 3.916 17 C 0.087 3.913 18 H 0.096 0.904 19 O -0.548 6.548 20 C 0.126 3.874 21 N -0.725 5.725 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.375 0.625 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.388 0.612 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 21.596 -17.598 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C 0.043 3.957 4 O -0.084 6.084 5 C 0.003 3.997 6 C -0.121 4.121 7 C -0.115 4.115 8 C -0.148 4.148 9 C -0.090 4.090 10 C -0.097 4.097 11 C -0.224 4.224 12 C 0.387 3.613 13 O -0.398 6.398 14 N -0.333 5.333 15 C -0.063 4.063 16 C -0.039 4.039 17 C 0.026 3.974 18 H 0.114 0.886 19 O -0.353 6.353 20 C -0.003 4.003 21 N -0.370 5.370 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.222 0.778 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.222 0.778 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.294 21.156 -17.749 28.562 hybrid contribution -0.267 -0.238 1.119 1.175 sum 7.027 20.918 -16.630 27.631 Atomic orbital electron populations 1.21751 0.92585 1.03312 1.02852 1.20441 0.97722 0.85855 1.05228 1.22759 0.96336 0.94216 0.82351 1.83806 1.68874 1.21907 1.33821 1.19522 1.01618 0.85388 0.93202 1.19950 1.02559 0.89875 0.99748 1.20916 0.99175 0.96701 0.94749 1.21046 1.01439 0.98614 0.93728 1.20512 0.97389 0.90927 1.00174 1.19475 1.03463 0.94105 0.92673 1.20542 1.13123 0.94634 0.94083 1.17028 0.83283 0.76760 0.84268 1.90786 1.26752 1.55103 1.67188 1.47631 1.12837 1.59704 1.13084 1.21769 0.85077 1.01730 0.97714 1.22314 1.03020 0.97438 0.81143 1.22477 0.86592 0.93841 0.94472 0.88634 1.86513 1.20455 1.70308 1.58053 1.21235 0.97702 0.88464 0.92860 1.42246 1.83397 1.04723 1.06601 1.19265 1.39260 0.92862 0.85792 0.91234 1.24759 1.02569 0.96772 0.96908 1.69689 1.54427 1.08851 1.24878 0.86118 0.77427 0.79430 0.83204 1.20590 1.21851 1.21881 0.92527 0.90755 0.91261 0.89262 0.87505 0.84911 0.84651 0.85123 0.85592 0.92631 0.90504 0.91341 0.89446 0.89363 0.77776 0.95813 0.96086 0.77761 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.06 -0.60 6.25 -27.88 -0.17 -0.77 16 3 C 0.09 1.13 6.21 -35.09 -0.22 0.91 16 4 O -0.18 -2.18 10.53 5.34 0.06 -2.13 16 5 C 0.05 0.56 7.39 -38.56 -0.28 0.27 16 6 C -0.10 -0.87 10.06 -39.46 -0.40 -1.27 16 7 C -0.10 -0.69 10.01 -39.56 -0.40 -1.08 16 8 C -0.13 -1.01 10.04 -39.56 -0.40 -1.41 16 9 C -0.07 -0.73 10.09 -39.40 -0.40 -1.13 16 10 C -0.10 -1.15 6.39 -104.98 -0.67 -1.83 16 11 C -0.22 -2.87 4.31 -103.25 -0.45 -3.32 16 12 C 0.60 8.67 6.57 -12.67 -0.08 8.59 16 13 O -0.52 -9.15 15.47 -3.52 -0.05 -9.21 16 14 N -0.60 -7.48 2.83 -182.97 -0.52 -8.00 16 15 C 0.08 0.77 10.26 59.85 0.61 1.38 16 16 C 0.08 1.09 5.15 -4.04 -0.02 1.07 16 17 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 18 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 19 O -0.55 -9.93 12.09 -43.98 -0.53 -10.46 16 20 C 0.13 2.50 5.90 -4.04 -0.02 2.48 16 21 N -0.73 -18.71 5.55 -59.91 -0.33 -19.05 16 22 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 26 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.11 1.27 7.86 -51.93 -0.41 0.86 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.07 0.65 6.62 -51.93 -0.34 0.31 16 42 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.09 1.22 7.42 -51.93 -0.39 0.83 16 44 H 0.37 6.53 8.44 45.56 0.38 6.92 16 45 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.39 10.76 7.67 -40.82 -0.31 10.45 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -34.80 405.34 -8.95 -43.76 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.52 Total: 12.79 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.86 Total: -3.53 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.13 Total: -55.00 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.53 Total: -21.79 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.80 -8.95 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717932678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.353 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds