Wall clock time and date at job start Sat Apr 11 2020 07:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.83686 * 2 1 4 4 C 1.54713 * 110.94872 * 123.73169 * 2 1 3 5 5 O 1.43771 * 102.77366 * 143.42797 * 4 2 1 6 6 C 1.35856 * 109.29372 * 332.35245 * 5 4 2 7 7 C 1.38876 * 111.31755 * 18.83894 * 6 5 4 8 8 C 1.37652 * 120.87427 * 179.29967 * 7 6 5 9 9 C 1.38651 * 120.32359 * 0.28373 * 8 7 6 10 10 C 1.37791 * 119.96970 * 359.74469 * 9 8 7 11 11 C 1.39528 * 120.18395 * 0.30836 * 10 9 8 12 12 C 1.47543 * 120.04758 * 179.89129 * 11 10 9 13 13 O 1.21586 * 119.99508 * 179.72680 * 12 11 10 14 14 N 1.34769 * 120.00061 * 359.71666 * 12 11 10 15 15 C 1.46505 * 120.00035 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46949 * 180.02562 * 15 14 12 17 17 O 1.42905 * 113.28058 * 313.06350 * 16 15 14 18 18 C 1.53498 * 114.20416 * 180.02562 * 16 15 14 19 19 N 1.47066 * 87.98306 * 220.34331 * 18 16 15 20 20 C 1.36940 * 136.05731 * 207.08256 * 19 18 16 21 21 H 1.08000 * 119.99932 * 349.94863 * 20 19 18 22 22 C 1.38813 * 119.99930 * 169.94032 * 20 19 18 23 23 N 1.31625 * 119.99407 * 158.01201 * 22 20 19 24 24 Si 1.86800 * 120.00412 * 337.74180 * 22 20 19 25 25 H 1.48501 * 109.47112 * 89.99637 * 24 22 20 26 26 H 1.48503 * 109.46967 * 209.99680 * 24 22 20 27 27 H 1.48500 * 109.46671 * 329.99569 * 24 22 20 28 28 C 1.47060 * 87.88814 * 27.33887 * 19 18 16 29 29 H 1.08993 * 109.47068 * 297.71881 * 1 2 3 30 30 H 1.09000 * 109.47189 * 57.72423 * 1 2 3 31 31 H 1.08998 * 109.46626 * 177.71825 * 1 2 3 32 32 H 1.08995 * 109.47267 * 182.27147 * 3 2 1 33 33 H 1.08990 * 109.47508 * 302.28053 * 3 2 1 34 34 H 1.09006 * 109.46917 * 62.27894 * 3 2 1 35 35 H 1.08999 * 110.75044 * 25.10642 * 4 2 1 36 36 H 1.09002 * 110.75354 * 261.74920 * 4 2 1 37 37 H 1.07996 * 119.84152 * 180.30916 * 8 7 6 38 38 H 1.07994 * 120.01769 * 179.97438 * 9 8 7 39 39 H 1.07999 * 119.90226 * 180.09984 * 10 9 8 40 40 H 0.97007 * 120.00097 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.46555 * 60.00643 * 15 14 12 42 42 H 1.08999 * 109.46980 * 300.00730 * 15 14 12 43 43 H 0.96692 * 113.99888 * 46.94185 * 17 16 15 44 44 H 1.08997 * 113.47439 * 105.56066 * 18 16 15 45 45 H 1.08998 * 113.51876 * 335.12369 * 18 16 15 46 46 H 0.96998 * 120.00190 * 3.52635 * 23 22 20 47 47 H 1.08998 * 113.46800 * 87.43838 * 28 19 18 48 48 H 1.09001 * 113.47448 * 217.88196 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0742 1.4299 0.0000 4 6 2.0832 -0.8023 1.2016 5 8 3.2484 -1.4384 0.6498 6 6 3.0735 -1.6147 -0.6859 7 6 2.0723 -0.7873 -1.1775 8 6 1.7418 -0.7955 -2.5137 9 6 2.4033 -1.6388 -3.3933 10 6 3.4004 -2.4702 -2.9314 11 6 3.7426 -2.4709 -1.5787 12 6 4.8090 -3.3641 -1.0869 13 8 5.1099 -3.3603 0.0911 14 7 5.4494 -4.1842 -1.9434 15 6 6.5088 -5.0706 -1.4552 16 6 7.0673 -5.8884 -2.6215 17 8 6.0513 -6.4688 -3.4420 18 6 8.1896 -6.8592 -2.2290 19 7 8.8774 -6.4856 -3.4741 20 6 9.7678 -7.0827 -4.3260 21 1 10.2436 -8.0110 -4.0461 22 6 10.0587 -6.4950 -5.5495 23 7 11.1816 -6.7889 -6.1702 24 14 8.8533 -5.2930 -6.3186 25 1 9.1689 -3.9155 -5.8625 26 1 8.9616 -5.3618 -7.7980 27 1 7.4711 -5.6464 -5.9064 28 6 8.1932 -5.1861 -3.3981 29 1 -0.3633 0.4780 0.9097 30 1 -0.3633 0.5488 -0.8689 31 1 -0.3632 -1.0269 -0.0409 32 1 3.1631 1.4043 -0.0407 33 1 1.6906 1.9647 -0.8687 34 1 1.7567 1.9395 0.9098 35 1 1.3593 -1.5455 1.5358 36 1 2.3579 -0.1347 2.0183 37 1 0.9639 -0.1415 -2.8789 38 1 2.1398 -1.6414 -4.4406 39 1 3.9160 -3.1255 -3.6177 40 1 5.2095 -4.1869 -2.8834 41 1 6.1003 -5.7440 -0.7016 42 1 7.3075 -4.4740 -1.0147 43 1 5.3457 -5.8549 -3.6874 44 1 7.8728 -7.9018 -2.2041 45 1 8.7280 -6.5608 -1.3295 46 1 11.7817 -7.4540 -5.7982 47 1 8.7319 -4.4458 -2.8067 48 1 7.8793 -4.8032 -4.3692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733513528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:09 Heat of formation + Delta-G solvation = -13.552038 kcal Electronic energy + Delta-G solvation = -30568.350044 eV Core-core repulsion = 26398.508420 eV Total energy + Delta-G solvation = -4169.841624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.86752 -40.03639 -38.93851 -37.56241 -35.51783 -35.23646 -34.12957 -32.29427 -31.23256 -30.19930 -28.78957 -27.88495 -26.92239 -26.11310 -25.42646 -24.14374 -22.57031 -21.70735 -21.12287 -19.98604 -19.49578 -18.07549 -17.59805 -17.42718 -16.82052 -16.50466 -16.22020 -15.68309 -15.60641 -15.18284 -14.90818 -14.63502 -14.36630 -14.13022 -14.05981 -13.85769 -13.61560 -13.36461 -13.30904 -13.17091 -12.93317 -12.69859 -12.56094 -12.44451 -12.09083 -11.98470 -11.92935 -11.48920 -11.46771 -11.31667 -11.06024 -11.03618 -10.75905 -10.32668 -9.96736 -9.85519 -9.37704 -9.28219 -9.15426 -8.94141 -8.61829 -8.51913 -7.17228 -6.34522 -3.19725 0.53102 0.94426 2.68088 2.92117 3.00317 3.38414 3.51000 3.52322 3.66856 3.75668 4.01635 4.25019 4.32880 4.40485 4.52675 4.58838 4.60203 4.62702 4.79886 4.81602 4.90659 4.99084 4.99871 5.04156 5.07397 5.12038 5.25625 5.30646 5.35724 5.48161 5.51485 5.58841 5.62522 5.73788 5.78642 5.85252 5.94770 6.00856 6.07794 6.14666 6.17399 6.20533 6.34694 6.37940 6.54065 6.78932 7.13854 7.35549 7.86412 8.16033 8.26201 8.97132 9.52061 10.38244 11.16831 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.002458 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.413588 B =11387.210810 C =12101.159574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C -0.135 4.135 4 C 0.051 3.949 5 O -0.274 6.274 6 C 0.172 3.828 7 C -0.177 4.177 8 C -0.041 4.041 9 C -0.155 4.155 10 C -0.052 4.052 11 C -0.157 4.157 12 C 0.559 3.441 13 O -0.523 6.523 14 N -0.726 5.726 15 C 0.107 3.893 16 C 0.070 3.930 17 O -0.517 6.517 18 C 0.137 3.863 19 N -0.614 5.614 20 C -0.308 4.308 21 H 0.080 0.920 22 C -0.021 4.021 23 N -0.923 5.923 24 Si 1.063 2.937 25 H -0.295 1.295 26 H -0.296 1.296 27 H -0.280 1.280 28 C 0.081 3.919 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.394 0.606 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.361 0.639 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.262 0.738 47 H 0.051 0.949 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.178 16.839 11.370 33.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.024 4.024 5 O -0.185 6.185 6 C 0.124 3.876 7 C -0.178 4.178 8 C -0.059 4.059 9 C -0.173 4.173 10 C -0.071 4.071 11 C -0.161 4.161 12 C 0.346 3.654 13 O -0.400 6.400 14 N -0.380 5.380 15 C -0.017 4.017 16 C 0.027 3.973 17 O -0.320 6.320 18 C 0.010 3.990 19 N -0.341 5.341 20 C -0.434 4.434 21 H 0.097 0.903 22 C -0.221 4.221 23 N -0.564 5.564 24 Si 0.895 3.105 25 H -0.223 1.223 26 H -0.224 1.224 27 H -0.207 1.207 28 C -0.045 4.045 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.230 0.770 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.207 0.793 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.392 17.070 10.985 32.509 hybrid contribution -0.250 -0.419 0.719 0.869 sum -25.641 16.651 11.704 32.737 Atomic orbital electron populations 1.21765 0.92245 1.02603 1.02621 1.20836 0.97045 0.95935 0.91510 1.21799 1.01650 0.93299 1.02495 1.24117 0.86403 0.95704 0.96161 1.87015 1.38205 1.75611 1.17677 1.19435 0.92571 0.91337 0.84274 1.20700 1.01222 1.00343 0.95494 1.20454 0.97815 0.96821 0.90846 1.20980 0.97869 0.98283 1.00211 1.21123 0.95799 0.97310 0.92850 1.19250 1.02455 1.01208 0.93215 1.18023 0.81490 0.79955 0.85910 1.90831 1.65370 1.67679 1.16086 1.45861 1.38742 1.41715 1.11708 1.21969 0.90193 0.92359 0.97192 1.23308 0.88001 0.96130 0.89867 1.86689 1.35641 1.39097 1.70594 1.22383 0.87669 0.97450 0.91474 1.45570 1.53232 1.10727 1.24568 1.19955 1.17501 1.08743 0.97167 0.90264 1.25759 0.99491 1.02976 0.93829 1.70936 1.07929 1.32613 1.44940 0.83788 0.76097 0.75039 0.75562 1.22316 1.22395 1.20659 1.23421 0.91456 0.91190 0.98444 0.91721 0.91723 0.91988 0.91937 0.91763 0.91653 0.90138 0.87318 0.85437 0.84610 0.84680 0.76995 0.90396 0.89847 0.79308 0.92483 0.92501 0.92753 0.93143 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.53 37.16 0.32 -0.31 16 2 C -0.05 -0.36 1.03 -154.28 -0.16 -0.52 16 3 C -0.14 -0.80 8.61 37.16 0.32 -0.48 16 4 C 0.05 0.41 7.10 38.06 0.27 0.68 16 5 O -0.27 -3.51 10.12 -34.88 -0.35 -3.87 16 6 C 0.17 2.07 6.73 -38.44 -0.26 1.81 16 7 C -0.18 -1.58 5.05 -104.12 -0.53 -2.10 16 8 C -0.04 -0.30 9.91 -39.64 -0.39 -0.69 16 9 C -0.16 -1.14 10.05 -39.59 -0.40 -1.54 16 10 C -0.05 -0.46 9.51 -39.26 -0.37 -0.84 16 11 C -0.16 -1.90 5.89 -104.72 -0.62 -2.52 16 12 C 0.56 8.09 7.76 -12.47 -0.10 8.00 16 13 O -0.52 -9.51 15.86 -10.30 -0.16 -9.68 16 14 N -0.73 -9.25 5.29 -61.35 -0.32 -9.57 16 15 C 0.11 1.56 5.42 -4.04 -0.02 1.54 16 16 C 0.07 1.22 1.74 -89.97 -0.16 1.06 16 17 O -0.52 -8.97 13.57 -35.23 -0.48 -9.45 16 18 C 0.14 2.77 8.10 -8.51 -0.07 2.70 16 19 N -0.61 -15.44 3.56 -184.59 -0.66 -16.10 16 20 C -0.31 -9.07 10.96 -15.06 -0.17 -9.24 16 21 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 22 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 23 N -0.92 -29.39 13.71 55.49 0.76 -28.63 16 24 Si 1.06 26.83 25.32 -169.99 -4.30 22.52 16 25 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.28 -6.57 6.55 56.52 0.37 -6.20 16 28 C 0.08 1.70 6.63 -8.38 -0.06 1.64 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 36 H 0.11 0.65 7.92 -51.93 -0.41 0.24 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.14 0.90 6.37 -52.49 -0.33 0.57 16 40 H 0.39 4.02 4.96 -40.82 -0.20 3.81 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.25 7.89 -51.93 -0.41 0.84 16 43 H 0.36 4.47 7.21 45.56 0.33 4.80 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 46 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 47 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 48 H 0.05 1.10 3.70 -51.93 -0.19 0.91 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -38.38 386.75 -8.47 -46.85 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.30 Total: 3.63 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.48 Total: -1.53 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.22 Total: -54.30 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.99 Total: -23.00 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.30 Total: 22.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.38 -8.47 -46.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733513528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.297 kcal (2) G-P(sol) polarization free energy of solvation -38.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds