Wall clock time and date at job start Sat Apr 11 2020 07:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.83686 * 2 1 4 4 C 1.54713 * 110.94872 * 123.73169 * 2 1 3 5 5 O 1.43771 * 102.77366 * 143.42797 * 4 2 1 6 6 C 1.35856 * 109.29372 * 332.35245 * 5 4 2 7 7 C 1.38876 * 111.31755 * 18.83894 * 6 5 4 8 8 C 1.37652 * 120.87427 * 179.29967 * 7 6 5 9 9 C 1.38651 * 120.32359 * 0.28373 * 8 7 6 10 10 C 1.37791 * 119.96970 * 359.74469 * 9 8 7 11 11 C 1.39528 * 120.18395 * 0.30836 * 10 9 8 12 12 C 1.47543 * 120.04758 * 179.89129 * 11 10 9 13 13 O 1.21586 * 119.99508 * 179.72680 * 12 11 10 14 14 N 1.34769 * 120.00061 * 359.71666 * 12 11 10 15 15 C 1.46505 * 120.00035 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46949 * 180.02562 * 15 14 12 17 17 O 1.42905 * 113.28058 * 313.06350 * 16 15 14 18 18 C 1.53498 * 114.20416 * 180.02562 * 16 15 14 19 19 N 1.47066 * 87.98306 * 220.34331 * 18 16 15 20 20 C 1.36940 * 136.05731 * 207.08256 * 19 18 16 21 21 H 1.08000 * 119.99932 * 349.94863 * 20 19 18 22 22 C 1.38813 * 119.99930 * 169.94032 * 20 19 18 23 23 N 1.31625 * 119.99407 * 158.01201 * 22 20 19 24 24 Si 1.86800 * 120.00412 * 337.74180 * 22 20 19 25 25 H 1.48501 * 109.47112 * 89.99637 * 24 22 20 26 26 H 1.48503 * 109.46967 * 209.99680 * 24 22 20 27 27 H 1.48500 * 109.46671 * 329.99569 * 24 22 20 28 28 C 1.47060 * 87.88814 * 27.33887 * 19 18 16 29 29 H 1.08993 * 109.47068 * 297.71881 * 1 2 3 30 30 H 1.09000 * 109.47189 * 57.72423 * 1 2 3 31 31 H 1.08998 * 109.46626 * 177.71825 * 1 2 3 32 32 H 1.08995 * 109.47267 * 182.27147 * 3 2 1 33 33 H 1.08990 * 109.47508 * 302.28053 * 3 2 1 34 34 H 1.09006 * 109.46917 * 62.27894 * 3 2 1 35 35 H 1.08999 * 110.75044 * 25.10642 * 4 2 1 36 36 H 1.09002 * 110.75354 * 261.74920 * 4 2 1 37 37 H 1.07996 * 119.84152 * 180.30916 * 8 7 6 38 38 H 1.07994 * 120.01769 * 179.97438 * 9 8 7 39 39 H 1.07999 * 119.90226 * 180.09984 * 10 9 8 40 40 H 0.97007 * 120.00097 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.46555 * 60.00643 * 15 14 12 42 42 H 1.08999 * 109.46980 * 300.00730 * 15 14 12 43 43 H 0.96692 * 113.99888 * 46.94185 * 17 16 15 44 44 H 1.08997 * 113.47439 * 105.56066 * 18 16 15 45 45 H 1.08998 * 113.51876 * 335.12369 * 18 16 15 46 46 H 0.96998 * 120.00190 * 3.52635 * 23 22 20 47 47 H 1.08998 * 113.46800 * 87.43838 * 28 19 18 48 48 H 1.09001 * 113.47448 * 217.88196 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0742 1.4299 0.0000 4 6 2.0832 -0.8023 1.2016 5 8 3.2484 -1.4384 0.6498 6 6 3.0735 -1.6147 -0.6859 7 6 2.0723 -0.7873 -1.1775 8 6 1.7418 -0.7955 -2.5137 9 6 2.4033 -1.6388 -3.3933 10 6 3.4004 -2.4702 -2.9314 11 6 3.7426 -2.4709 -1.5787 12 6 4.8090 -3.3641 -1.0869 13 8 5.1099 -3.3603 0.0911 14 7 5.4494 -4.1842 -1.9434 15 6 6.5088 -5.0706 -1.4552 16 6 7.0673 -5.8884 -2.6215 17 8 6.0513 -6.4688 -3.4420 18 6 8.1896 -6.8592 -2.2290 19 7 8.8774 -6.4856 -3.4741 20 6 9.7678 -7.0827 -4.3260 21 1 10.2436 -8.0110 -4.0461 22 6 10.0587 -6.4950 -5.5495 23 7 11.1816 -6.7889 -6.1702 24 14 8.8533 -5.2930 -6.3186 25 1 9.1689 -3.9155 -5.8625 26 1 8.9616 -5.3618 -7.7980 27 1 7.4711 -5.6464 -5.9064 28 6 8.1932 -5.1861 -3.3981 29 1 -0.3633 0.4780 0.9097 30 1 -0.3633 0.5488 -0.8689 31 1 -0.3632 -1.0269 -0.0409 32 1 3.1631 1.4043 -0.0407 33 1 1.6906 1.9647 -0.8687 34 1 1.7567 1.9395 0.9098 35 1 1.3593 -1.5455 1.5358 36 1 2.3579 -0.1347 2.0183 37 1 0.9639 -0.1415 -2.8789 38 1 2.1398 -1.6414 -4.4406 39 1 3.9160 -3.1255 -3.6177 40 1 5.2095 -4.1869 -2.8834 41 1 6.1003 -5.7440 -0.7016 42 1 7.3075 -4.4740 -1.0147 43 1 5.3457 -5.8549 -3.6874 44 1 7.8728 -7.9018 -2.2041 45 1 8.7280 -6.5608 -1.3295 46 1 11.7817 -7.4540 -5.7982 47 1 8.7319 -4.4458 -2.8067 48 1 7.8793 -4.8032 -4.3692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733513528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:03 Heat of formation + Delta-G solvation = -43.097048 kcal Electronic energy + Delta-G solvation = -30569.631212 eV Core-core repulsion = 26398.508420 eV Total energy + Delta-G solvation = -4171.122792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -42.53818 -41.34284 -40.22627 -38.28018 -36.78275 -36.07677 -35.34343 -34.44532 -32.05399 -30.85252 -30.34653 -28.27045 -27.69094 -27.43945 -27.08780 -25.01516 -23.52471 -22.99239 -22.15381 -21.24383 -20.69640 -19.71811 -18.79734 -18.26857 -17.78830 -17.58286 -17.09722 -16.85152 -16.64323 -16.37001 -16.04555 -15.89115 -15.72588 -15.29332 -15.06472 -14.70651 -14.69302 -14.57661 -14.43348 -14.09138 -13.85587 -13.70418 -13.52907 -13.23149 -13.19002 -12.89100 -12.81448 -12.71270 -12.70522 -12.37477 -11.96243 -11.90596 -11.85254 -11.68060 -11.60761 -11.35839 -10.97334 -10.79773 -10.68284 -10.29426 -9.92391 -9.25780 -9.20072 -8.69461 -5.46388 -0.18950 0.30371 1.36631 1.53130 1.71539 1.80554 1.95838 2.27887 2.53855 2.76453 2.84092 2.92900 3.19550 3.23043 3.27791 3.47843 3.66840 3.75154 3.88362 3.93165 4.11888 4.23001 4.24382 4.35045 4.40677 4.49070 4.50589 4.56103 4.57285 4.63266 4.69409 4.75880 4.77138 4.78051 4.92726 4.95432 4.98500 5.02045 5.16958 5.17851 5.23092 5.25980 5.32314 5.38254 5.41289 5.62677 5.93806 6.11731 6.37229 6.66369 6.71947 7.12350 7.31556 8.26002 8.83956 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.002458 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.413588 B =11387.210810 C =12101.159574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.133 4.133 4 C 0.041 3.959 5 O -0.312 6.312 6 C 0.139 3.861 7 C -0.179 4.179 8 C -0.036 4.036 9 C -0.149 4.149 10 C -0.054 4.054 11 C -0.185 4.185 12 C 0.558 3.442 13 O -0.571 6.571 14 N -0.714 5.714 15 C 0.121 3.879 16 C 0.105 3.895 17 O -0.533 6.533 18 C 0.128 3.872 19 N -0.649 5.649 20 C -0.300 4.300 21 H 0.043 0.957 22 C -0.083 4.083 23 N -0.958 5.958 24 Si 1.107 2.893 25 H -0.275 1.275 26 H -0.302 1.302 27 H -0.251 1.251 28 C 0.072 3.928 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.157 0.843 40 H 0.409 0.591 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.385 0.615 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.247 0.753 47 H 0.064 0.936 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.106 19.453 10.774 37.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 C -0.190 4.190 4 C -0.033 4.033 5 O -0.225 6.225 6 C 0.092 3.908 7 C -0.180 4.180 8 C -0.054 4.054 9 C -0.167 4.167 10 C -0.072 4.072 11 C -0.189 4.189 12 C 0.347 3.653 13 O -0.451 6.451 14 N -0.369 5.369 15 C -0.004 4.004 16 C 0.062 3.938 17 O -0.339 6.339 18 C 0.002 3.998 19 N -0.377 5.377 20 C -0.427 4.427 21 H 0.061 0.939 22 C -0.275 4.275 23 N -0.602 5.602 24 Si 0.932 3.068 25 H -0.202 1.202 26 H -0.230 1.230 27 H -0.176 1.176 28 C -0.053 4.053 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.177 0.823 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.247 0.753 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.234 0.766 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.376 19.692 10.409 36.866 hybrid contribution 0.939 -1.278 0.999 1.875 sum -28.436 18.414 11.408 35.747 Atomic orbital electron populations 1.21755 0.90321 1.02681 1.04007 1.20875 0.98373 0.95702 0.89856 1.21792 1.00156 0.93084 1.03934 1.24399 0.85582 0.96192 0.97162 1.86949 1.40417 1.76465 1.18685 1.19840 0.94056 0.92691 0.84240 1.21029 1.00351 0.99865 0.96758 1.20902 0.97851 0.96574 0.90036 1.21411 0.96574 0.96940 1.01726 1.21410 0.96287 0.97890 0.91662 1.19298 1.02812 1.02020 0.94807 1.18464 0.81615 0.79849 0.85332 1.90799 1.66960 1.69212 1.18103 1.45680 1.37934 1.40965 1.12350 1.21679 0.90668 0.92307 0.95720 1.22710 0.87156 0.94174 0.89727 1.86647 1.36231 1.40444 1.70613 1.22651 0.88689 0.98122 0.90367 1.45666 1.53165 1.13221 1.25603 1.19809 1.17343 1.07528 0.98031 0.93922 1.27191 1.00270 1.05391 0.94697 1.71052 1.09354 1.33890 1.45918 0.83289 0.75241 0.74005 0.74303 1.20156 1.23029 1.17567 1.23696 0.92320 0.89977 0.99279 0.90329 0.90386 0.92534 0.94212 0.90565 0.90016 0.89678 0.86054 0.82317 0.81420 0.82561 0.75301 0.89963 0.90024 0.76559 0.93080 0.90288 0.94427 0.91804 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 8.53 71.98 0.61 -0.22 16 2 C -0.05 -0.56 1.03 -52.03 -0.05 -0.61 16 3 C -0.13 -1.30 8.61 71.98 0.62 -0.68 16 4 C 0.04 0.64 7.10 72.57 0.52 1.15 16 5 O -0.31 -8.27 10.12 -77.02 -0.78 -9.05 16 6 C 0.14 3.29 6.73 23.01 0.15 3.45 16 7 C -0.18 -2.85 5.05 -19.54 -0.10 -2.94 16 8 C -0.04 -0.39 9.91 22.23 0.22 -0.17 16 9 C -0.15 -1.56 10.05 22.26 0.22 -1.34 16 10 C -0.05 -0.80 9.51 22.48 0.21 -0.58 16 11 C -0.19 -4.27 5.89 -19.93 -0.12 -4.38 16 12 C 0.56 15.75 7.76 86.70 0.67 16.42 16 13 O -0.57 -21.08 15.86 10.92 0.17 -20.91 16 14 N -0.71 -16.60 5.29 -466.27 -2.47 -19.07 16 15 C 0.12 3.27 5.42 86.38 0.47 3.74 16 16 C 0.11 3.41 1.74 -10.37 -0.02 3.39 16 17 O -0.53 -16.80 13.57 -148.98 -2.02 -18.82 16 18 C 0.13 5.00 8.10 83.18 0.67 5.67 16 19 N -0.65 -32.25 3.56 -738.41 -2.63 -34.88 16 20 C -0.30 -18.06 10.96 84.03 0.92 -17.14 16 21 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 22 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 23 N -0.96 -62.92 13.71 21.65 0.30 -62.63 16 24 Si 1.11 53.29 25.32 68.60 1.74 55.03 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 27 H -0.25 -10.73 6.55 99.48 0.65 -10.07 16 28 C 0.07 2.86 6.63 83.27 0.55 3.41 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.09 1.15 7.92 -2.39 -0.02 1.14 16 36 H 0.12 1.42 7.92 -2.39 -0.02 1.40 16 37 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.16 1.46 6.37 -2.91 -0.02 1.44 16 40 H 0.41 6.94 4.96 -92.70 -0.46 6.48 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 2.29 7.89 -2.39 -0.02 2.27 16 43 H 0.38 7.93 7.21 -74.06 -0.53 7.40 16 44 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 46 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 47 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 48 H 0.05 2.07 3.70 -2.39 -0.01 2.06 16 Total: -1.00 -87.91 386.75 0.26 -87.65 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.09 Total: 18.10 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 6.03 Total: 4.57 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.80 Total: -116.57 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -2.63 Total: -48.77 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 1.74 Total: 55.03 kcal Total: -87.91 0.26 -87.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733513528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.558 kcal (2) G-P(sol) polarization free energy of solvation -87.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds