Wall clock time and date at job start Sat Apr 11 2020 07:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30866 * 126.20170 * 2 1 4 4 C 1.34573 * 107.28572 * 180.13390 * 3 2 1 5 5 C 1.47837 * 126.02178 * 179.83574 * 4 3 2 6 6 O 1.21563 * 120.00030 * 179.69096 * 5 4 3 7 7 N 1.34777 * 119.99979 * 359.41549 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27958 * 7 5 4 9 9 C 1.52997 * 109.47551 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.47218 * 64.99114 * 9 8 7 11 11 N 1.46504 * 109.46732 * 304.99570 * 9 8 7 12 12 C 1.36940 * 120.00004 * 154.99485 * 11 9 8 13 13 H 1.08001 * 119.99498 * 0.02562 * 12 11 9 14 14 C 1.38808 * 120.00116 * 179.97438 * 12 11 9 15 15 N 1.31618 * 120.00180 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99956 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47383 * 60.00038 * 16 14 12 18 18 H 1.48496 * 109.47273 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47110 * 300.00032 * 16 14 12 20 20 C 1.52994 * 109.47109 * 185.00134 * 9 8 7 21 21 C 1.53005 * 117.49406 * 248.74287 * 20 9 8 22 22 C 1.53006 * 117.49495 * 180.08798 * 20 9 8 23 23 N 1.31560 * 107.95442 * 359.56921 * 4 3 2 24 24 N 1.28849 * 108.70719 * 0.26342 * 23 4 3 25 25 C 1.40103 * 125.76776 * 180.02562 * 24 23 4 26 26 N 1.33629 * 125.59939 * 359.97269 * 25 24 23 27 27 C 1.30801 * 109.79080 * 180.02562 * 26 25 24 28 28 N 1.34430 * 108.20017 * 0.02562 * 27 26 25 29 29 H 0.96999 * 126.77839 * 179.97438 * 28 27 26 30 30 N 1.31151 * 125.59339 * 179.67043 * 25 24 23 31 31 H 1.09003 * 109.46975 * 270.34643 * 1 2 3 32 32 H 1.08996 * 109.46759 * 30.34550 * 1 2 3 33 33 H 1.08994 * 109.46818 * 150.34231 * 1 2 3 34 34 H 0.97000 * 119.99736 * 0.27230 * 7 5 4 35 35 H 1.08998 * 109.46795 * 299.99885 * 8 7 5 36 36 H 1.09002 * 109.47196 * 59.99076 * 8 7 5 37 37 H 0.96998 * 120.00570 * 335.00308 * 11 9 8 38 38 H 0.96998 * 119.99891 * 179.97438 * 15 14 12 39 39 H 1.08993 * 115.55493 * 34.41462 * 20 9 8 40 40 H 1.09001 * 117.50171 * 0.02562 * 21 20 9 41 41 H 1.09005 * 117.49638 * 145.02634 * 21 20 9 42 42 H 1.09002 * 117.49442 * 214.97461 * 22 20 9 43 43 H 1.09001 * 117.50046 * 359.97438 * 22 20 9 44 44 H 1.07998 * 125.89926 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5531 0.6198 -0.0030 5 6 4.7632 1.4690 -0.0075 6 8 5.8655 0.9565 -0.0043 7 7 4.6442 2.8115 -0.0209 8 6 5.8433 3.6530 -0.0316 9 6 5.4322 5.1267 -0.0464 10 1 4.9175 5.3696 0.8832 11 7 4.5361 5.3722 -1.1792 12 6 3.6483 6.4139 -1.1366 13 1 3.6089 7.0547 -0.2681 14 6 2.7997 6.6469 -2.2101 15 7 2.8480 5.8663 -3.2687 16 14 1.5891 8.0683 -2.1523 17 1 2.3316 9.3451 -1.9983 18 1 0.8034 8.1009 -3.4119 19 1 0.6693 7.8887 -1.0003 20 6 6.6790 6.0026 -0.1833 21 6 7.0808 6.8530 1.0236 22 6 6.4769 7.5190 -0.2154 23 7 3.5310 -0.6956 0.0046 24 7 2.3039 -1.0884 0.0066 25 6 1.8704 -2.4207 0.0147 26 7 2.6630 -3.4965 0.0212 27 6 1.9348 -4.5830 0.0273 28 7 0.6402 -4.2209 0.0242 29 1 -0.1284 -4.8126 0.0269 30 7 0.6201 -2.8166 0.0228 31 1 -0.3633 0.0062 1.0277 32 1 -0.3633 0.8869 -0.5192 33 1 -0.3633 -0.8930 -0.5085 34 1 3.7646 3.2204 -0.0235 35 1 6.4375 3.4502 0.8594 36 1 6.4344 3.4321 -0.9204 37 1 4.5716 4.7969 -1.9593 38 1 2.2547 6.0289 -4.0187 39 1 7.4796 5.5885 -0.7961 40 1 6.4571 6.7880 1.9152 41 1 8.1458 6.9986 1.2044 42 1 7.1449 8.1023 -0.8491 43 1 5.4557 7.8924 -0.1394 44 1 2.3090 -5.5961 0.0337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752472456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:55 Heat of formation + Delta-G solvation = 208.160882 kcal Electronic energy + Delta-G solvation = -29486.314543 eV Core-core repulsion = 25287.132272 eV Total energy + Delta-G solvation = -4199.182272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.85437 -42.70518 -39.17802 -37.45176 -35.08792 -34.62964 -33.51463 -33.30257 -32.79167 -31.29166 -30.74960 -28.36463 -28.13351 -25.41969 -24.17861 -23.47446 -22.48588 -21.98668 -21.63337 -20.65982 -20.19620 -19.50837 -19.15743 -18.08874 -17.37403 -17.28633 -16.63003 -15.82211 -15.62153 -15.52210 -15.08876 -14.71230 -14.48890 -14.22845 -13.84811 -13.57709 -13.38144 -13.18194 -13.09815 -12.87181 -12.60066 -12.11702 -11.94226 -11.63434 -11.31934 -11.10112 -10.82124 -10.81450 -10.79796 -10.79209 -10.66108 -10.53311 -10.11965 -10.09956 -10.00575 -9.85612 -9.47641 -9.42851 -9.24278 -8.90555 -8.60630 -6.97234 -5.73282 -3.02811 0.45545 1.10794 1.32062 1.97162 2.20286 2.49023 3.14386 3.45718 3.50567 3.51213 3.56473 3.64826 3.84351 3.99933 4.45935 4.48251 4.65818 4.82557 5.00683 5.23138 5.28160 5.30201 5.38191 5.52931 5.57507 5.64682 5.67489 5.80412 5.88002 5.96352 6.04235 6.10683 6.12738 6.23176 6.31633 6.39705 6.45400 6.59448 6.64804 6.81971 6.90698 7.03566 7.17383 7.71755 7.76491 8.06578 8.42895 8.50524 9.55218 10.09303 10.45369 11.48462 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.012669 B = 0.002666 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.602325 B =10500.416300 C =12282.749797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.248 3.752 3 N -0.457 5.457 4 C 0.171 3.829 5 C 0.611 3.389 6 O -0.526 6.526 7 N -0.687 5.687 8 C 0.119 3.881 9 C 0.193 3.807 10 H 0.057 0.943 11 N -0.716 5.716 12 C -0.236 4.236 13 H 0.070 0.930 14 C -0.008 4.008 15 N -0.928 5.928 16 Si 0.903 3.097 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.286 1.286 20 C -0.158 4.158 21 C -0.197 4.197 22 C -0.156 4.156 23 N -0.229 5.229 24 N -0.235 5.235 25 C 0.465 3.535 26 N -0.519 5.519 27 C 0.292 3.708 28 N -0.468 5.468 29 H 0.452 0.548 30 N -0.295 5.295 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.421 0.579 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -20.498 8.663 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 N -0.183 5.183 4 C -0.111 4.111 5 C 0.392 3.608 6 O -0.400 6.400 7 N -0.339 5.339 8 C -0.005 4.005 9 C 0.082 3.918 10 H 0.075 0.925 11 N -0.357 5.357 12 C -0.367 4.367 13 H 0.088 0.912 14 C -0.205 4.205 15 N -0.575 5.575 16 Si 0.734 3.266 17 H -0.214 1.214 18 H -0.219 1.219 19 H -0.213 1.213 20 C -0.180 4.180 21 C -0.234 4.234 22 C -0.193 4.193 23 N -0.064 5.064 24 N -0.029 5.029 25 C 0.095 3.905 26 N -0.248 5.248 27 C -0.008 4.008 28 N -0.189 5.189 29 H 0.300 0.700 30 N -0.131 5.131 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.260 0.740 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.789 -20.178 8.686 22.484 hybrid contribution -1.602 0.063 -0.469 1.670 sum -6.391 -20.115 8.216 22.649 Atomic orbital electron populations 1.20532 0.82259 1.05716 1.04928 1.25348 0.97917 0.80348 0.99154 1.71545 1.00374 1.26445 1.19891 1.24128 0.93294 0.88429 1.05242 1.16156 0.84650 0.82011 0.78007 1.90813 1.25144 1.73759 1.50267 1.45687 1.12299 1.04064 1.71883 1.21727 0.86255 0.90445 1.02060 1.20056 0.89386 0.89160 0.93183 0.92498 1.42439 1.40481 1.35619 1.17139 1.19089 1.11042 1.05652 1.00932 0.91201 1.24705 1.00071 0.99096 0.96598 1.69654 1.41269 1.39784 1.06836 0.86346 0.81243 0.82374 0.76657 1.21376 1.21863 1.21276 1.23021 1.00478 0.94317 1.00201 1.22969 1.00062 1.07390 0.93017 1.22784 1.02349 0.95206 0.98960 1.74685 0.99001 1.13705 1.19020 1.43186 1.04691 1.02494 1.52525 1.19374 0.87191 0.83871 1.00051 1.70366 1.33979 0.95833 1.24629 1.26279 0.80392 1.00126 0.93958 1.48034 1.09683 1.04327 1.56848 0.70012 1.78259 1.15835 0.89801 1.29211 0.88798 0.87657 0.88670 0.74038 0.91095 0.91259 0.77981 0.93514 0.89049 0.89513 0.90105 0.90247 0.87676 0.74480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.84 36.01 0.35 -0.40 16 2 C 0.25 3.69 7.94 -155.25 -1.23 2.46 16 3 N -0.46 -8.12 11.09 -8.47 -0.09 -8.22 16 4 C 0.17 3.27 7.96 -156.30 -1.24 2.03 16 5 C 0.61 12.21 7.83 -12.33 -0.10 12.11 16 6 O -0.53 -11.56 17.09 5.31 0.09 -11.47 16 7 N -0.69 -12.95 5.38 -61.25 -0.33 -13.28 16 8 C 0.12 2.13 5.21 -4.04 -0.02 2.11 16 9 C 0.19 3.68 2.70 -67.93 -0.18 3.50 16 10 H 0.06 1.10 7.84 -51.93 -0.41 0.69 16 11 N -0.72 -16.83 4.54 -53.43 -0.24 -17.07 16 12 C -0.24 -6.13 8.63 -15.06 -0.13 -6.26 16 13 H 0.07 1.76 6.91 -52.49 -0.36 1.40 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 15 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 16 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 C -0.16 -2.80 5.36 -90.62 -0.49 -3.29 16 21 C -0.20 -3.03 10.18 -26.69 -0.27 -3.30 16 22 C -0.16 -2.80 9.78 -26.69 -0.26 -3.06 16 23 N -0.23 -4.32 12.03 32.08 0.39 -3.93 16 24 N -0.24 -3.72 3.52 -10.92 -0.04 -3.76 16 25 C 0.46 5.97 8.74 -320.52 -2.80 3.17 16 26 N -0.52 -5.97 11.20 -14.87 -0.17 -6.14 16 27 C 0.29 1.43 13.12 -90.68 -1.19 0.24 16 28 N -0.47 -2.01 7.44 29.52 0.22 -1.79 16 29 H 0.45 -0.12 8.96 -182.34 -1.63 -1.75 16 30 N -0.30 -2.75 10.41 30.08 0.31 -2.44 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.84 6.33 -51.93 -0.33 0.51 16 34 H 0.42 8.29 7.85 -40.82 -0.32 7.96 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.39 9.99 7.80 -40.82 -0.32 9.67 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.09 1.58 8.11 -51.93 -0.42 1.15 16 40 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.10 2.11 6.23 -51.93 -0.32 1.79 16 44 H 0.24 -0.24 8.06 -52.49 -0.42 -0.66 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -37.31 382.70 -12.68 -49.99 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -6.63 Total: 13.08 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: -7.66 Total: 9.00 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: 0.77 Total: -83.22 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.31 -12.68 -49.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.155 kcal (2) G-P(sol) polarization free energy of solvation -37.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 220.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds