Wall clock time and date at job start Sat Apr 11 2020 07:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.45523 * 2 1 4 4 C 1.54475 * 110.51188 * 237.24727 * 2 1 3 5 5 O 1.44418 * 104.80388 * 265.32961 * 4 2 1 6 6 C 1.44425 * 105.27801 * 319.48969 * 5 4 2 7 7 H 1.08998 * 110.46049 * 281.63345 * 6 5 4 8 8 C 1.53004 * 110.37418 * 159.33974 * 6 5 4 9 9 N 1.46904 * 109.46763 * 69.62004 * 8 6 5 10 10 C 1.46906 * 110.99506 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46896 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.46825 * 59.99491 * 11 10 9 13 13 O 1.42895 * 109.47253 * 300.00003 * 11 10 9 14 14 C 1.52999 * 109.47200 * 179.97438 * 11 10 9 15 15 N 1.46497 * 109.46992 * 184.99961 * 14 11 10 16 16 C 1.34777 * 119.99525 * 179.97438 * 15 14 11 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 14 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 C 1.54478 * 104.80060 * 40.50957 * 6 5 4 29 29 H 1.09007 * 109.47077 * 297.39460 * 1 2 3 30 30 H 1.08998 * 109.47250 * 57.39322 * 1 2 3 31 31 H 1.09001 * 109.46845 * 177.39764 * 1 2 3 32 32 H 1.08998 * 109.47371 * 182.60709 * 3 2 1 33 33 H 1.09004 * 109.47341 * 302.60465 * 3 2 1 34 34 H 1.09000 * 109.47144 * 62.60423 * 3 2 1 35 35 H 1.09001 * 110.37345 * 24.16275 * 4 2 1 36 36 H 1.09004 * 110.37112 * 146.50143 * 4 2 1 37 37 H 1.08993 * 109.46951 * 309.61968 * 8 6 5 38 38 H 1.08999 * 109.46788 * 189.61844 * 8 6 5 39 39 H 1.00898 * 110.99714 * 56.04714 * 9 8 6 40 40 H 1.08994 * 109.47253 * 59.99786 * 10 9 8 41 41 H 1.09003 * 109.46885 * 299.99833 * 10 9 8 42 42 H 0.96701 * 113.99770 * 300.00201 * 13 11 10 43 43 H 1.08995 * 109.46838 * 64.99849 * 14 11 10 44 44 H 1.09001 * 109.46617 * 305.00184 * 14 11 10 45 45 H 0.97000 * 120.00580 * 0.02562 * 15 14 11 46 46 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 47 47 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 48 48 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.51386 * 94.66864 * 28 6 5 50 50 H 1.09008 * 110.50626 * 217.24082 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 6 2.0712 -0.7827 -1.2168 5 8 2.3070 -2.1185 -0.7211 6 6 2.8758 -1.9413 0.5946 7 1 3.9305 -1.6762 0.5212 8 6 2.7042 -3.2149 1.4250 9 7 3.5690 -4.2722 0.8843 10 6 3.4299 -5.5131 1.6582 11 6 4.3431 -6.5884 1.0662 12 1 5.3781 -6.2488 1.1069 13 8 3.9746 -6.8308 -0.2930 14 6 4.1987 -7.8807 1.8725 15 7 5.1587 -8.8724 1.3815 16 6 5.2133 -10.0947 1.9468 17 8 4.4675 -10.3737 2.8616 18 6 6.1966 -11.1170 1.4377 19 16 6.0217 -12.6476 2.3877 20 6 7.2517 -13.6364 1.6041 21 1 7.8359 -13.2287 0.7923 22 6 7.4707 -14.9389 2.0306 23 7 6.7598 -15.4354 3.0210 24 14 8.7751 -15.9869 1.2003 25 1 10.1010 -15.3341 1.3458 26 1 8.8118 -17.3280 1.8369 27 1 8.4501 -16.1314 -0.2414 28 6 2.0714 -0.7797 1.2191 29 1 -0.3633 0.4729 0.9125 30 1 -0.3634 0.5538 -0.8657 31 1 -0.3633 -1.0266 -0.0467 32 1 3.1535 1.4153 -0.0467 33 1 1.6728 1.9675 -0.8657 34 1 1.7486 1.9392 0.9124 35 1 1.3310 -0.8000 -2.0167 36 1 3.0023 -0.3392 -1.5697 37 1 1.6644 -3.5389 1.3827 38 1 2.9802 -3.0136 2.4601 39 1 4.5315 -3.9712 0.8529 40 1 2.3950 -5.8528 1.6171 41 1 3.7106 -5.3280 2.6951 42 1 3.0640 -7.1364 -0.4051 43 1 3.1862 -8.2681 1.7596 44 1 4.3941 -7.6758 2.9251 45 1 5.7555 -8.6492 0.6501 46 1 5.9990 -11.3183 0.3848 47 1 7.2106 -10.7334 1.5502 48 1 6.9125 -16.3458 3.3190 49 1 1.2490 -1.1652 1.8218 50 1 2.7215 -0.1460 1.8224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753905217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:21 Heat of formation + Delta-G solvation = -147.034245 kcal Electronic energy + Delta-G solvation = -27046.358007 eV Core-core repulsion = 23006.172112 eV Total energy + Delta-G solvation = -4040.185896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41151 -39.39530 -38.07092 -35.93445 -34.80717 -34.05238 -32.40838 -31.71545 -30.24323 -28.65869 -27.91394 -26.63092 -25.84958 -25.40659 -23.68057 -22.20851 -21.49667 -20.24723 -19.90610 -17.90251 -17.24945 -16.68652 -16.60958 -16.35389 -15.98522 -15.91196 -15.30718 -15.06661 -14.79530 -14.76750 -14.63983 -14.52319 -14.11651 -13.89974 -13.68066 -13.56765 -13.20394 -13.04025 -12.85017 -12.73900 -12.52864 -12.29906 -12.20795 -12.03940 -11.76072 -11.70268 -11.27651 -11.22070 -11.20314 -11.03603 -11.02479 -11.01876 -10.76073 -10.25820 -10.05426 -9.79940 -9.38642 -9.04485 -8.89666 -8.76041 -8.22155 -6.48063 -6.19627 -3.90192 2.99784 3.11445 3.25438 3.27961 3.30981 3.41760 3.56085 3.82133 3.93166 4.16593 4.22679 4.25655 4.30577 4.48355 4.53534 4.65827 4.68611 4.74553 4.79040 4.87794 5.01270 5.03927 5.10280 5.13254 5.15466 5.17682 5.20520 5.22818 5.26989 5.30572 5.35942 5.41054 5.54223 5.55102 5.59913 5.62508 5.73344 5.75240 5.82997 5.93001 6.17737 6.42768 6.53842 6.63875 6.95078 7.48968 7.61432 7.74080 8.37175 8.62859 9.25609 10.87794 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.043327 B = 0.001295 C = 0.001277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.090590 B =21621.136522 C =21924.730594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C -0.139 4.139 4 C 0.050 3.950 5 O -0.351 6.351 6 C 0.080 3.920 7 H 0.066 0.934 8 C 0.065 3.935 9 N -0.672 5.672 10 C 0.029 3.971 11 C 0.102 3.898 12 H 0.102 0.898 13 O -0.544 6.544 14 C 0.091 3.909 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.521 6.521 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.143 4.143 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.341 0.659 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.377 0.623 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.402 0.598 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.269 0.731 49 H 0.078 0.922 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 35.731 -5.783 37.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.028 4.028 5 O -0.269 6.269 6 C 0.021 3.979 7 H 0.084 0.916 8 C -0.065 4.065 9 N -0.303 5.303 10 C -0.101 4.101 11 C 0.041 3.959 12 H 0.120 0.880 13 O -0.349 6.349 14 C -0.035 4.035 15 N -0.388 5.388 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.504 5.504 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.182 4.182 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.159 0.841 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.237 0.763 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.021 34.891 -4.818 36.906 hybrid contribution 1.920 0.106 -0.784 2.076 sum -9.101 34.997 -5.602 36.593 Atomic orbital electron populations 1.21847 0.93339 1.02348 1.01888 1.21942 0.96804 0.95951 0.95317 1.21851 1.00878 0.94673 1.02216 1.23552 0.99903 0.83294 0.96017 1.89284 1.82680 1.24767 1.30162 1.22943 0.96924 0.94011 0.83975 0.91603 1.22044 0.99224 0.90317 0.94869 1.60247 1.12171 1.03311 1.54573 1.22597 1.01186 0.91041 0.95261 1.22079 0.99252 0.91918 0.82626 0.88026 1.86600 1.34915 1.89141 1.24245 1.21917 0.94211 0.88627 0.98720 1.45866 1.40374 1.13400 1.39128 1.20331 0.83890 0.81836 0.82171 1.90697 1.41864 1.78421 1.28535 1.23527 1.00392 1.01178 1.05269 1.85366 1.50824 1.01848 1.45387 1.22839 1.23013 1.00400 1.22185 0.90952 1.24985 0.96654 0.96859 0.95019 1.70011 1.38811 1.16054 1.25494 0.86223 0.80992 0.78870 0.79417 1.19948 1.20816 1.19913 1.23117 1.00457 0.96829 0.97769 0.92452 0.92407 0.91998 0.92394 0.92248 0.92235 0.89143 0.92367 0.90023 0.93939 0.84091 0.90158 0.94027 0.77567 0.91238 0.90950 0.76310 0.89113 0.89227 0.92147 0.90333 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.28 37.16 0.31 -0.33 16 2 C -0.10 -0.49 1.05 -152.94 -0.16 -0.65 16 3 C -0.14 -0.52 8.32 37.16 0.31 -0.21 16 4 C 0.05 0.31 6.74 37.93 0.26 0.57 16 5 O -0.35 -3.19 11.34 -35.23 -0.40 -3.59 16 6 C 0.08 0.53 3.46 -25.95 -0.09 0.44 16 7 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 8 C 0.06 0.43 5.29 -3.82 -0.02 0.41 16 9 N -0.67 -5.13 6.37 -113.77 -0.72 -5.86 16 10 C 0.03 0.21 5.35 -3.82 -0.02 0.19 16 11 C 0.10 0.85 3.20 -26.73 -0.09 0.77 16 12 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 13 O -0.54 -5.36 13.15 -35.23 -0.46 -5.82 16 14 C 0.09 1.00 5.31 -4.04 -0.02 0.98 16 15 N -0.73 -9.96 5.50 -60.30 -0.33 -10.29 16 16 C 0.53 10.07 7.85 -10.98 -0.09 9.98 16 17 O -0.52 -11.92 15.86 5.55 0.09 -11.83 16 18 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 C -0.14 -0.71 5.92 -25.16 -0.15 -0.86 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.09 0.52 7.87 -51.93 -0.41 0.12 16 36 H 0.06 0.34 7.84 -51.93 -0.41 -0.07 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.34 2.40 8.73 -39.29 -0.34 2.05 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.38 2.93 9.05 45.56 0.41 3.35 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.40 4.64 8.47 -40.82 -0.35 4.29 16 46 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 47 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.08 0.38 7.46 -51.93 -0.39 0.00 16 50 H 0.08 0.31 7.74 -51.92 -0.40 -0.09 16 LS Contribution 422.32 15.07 6.36 6.36 Total: -1.00 -36.00 422.32 -9.50 -45.50 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.19 Total: 3.26 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 0.66 Total: -4.76 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.32 Total: -41.78 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.77 Total: -21.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -36.00 -9.50 -45.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753905217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.533 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds