Wall clock time and date at job start Sat Apr 11 2020 07:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.91602 * 2 1 4 4 N 1.46500 * 109.47568 * 62.44979 * 3 2 1 5 5 C 1.36928 * 120.00500 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.38817 * 120.00141 * 179.97438 * 5 4 3 8 8 N 1.31615 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99948 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47102 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46986 * 120.00080 * 9 7 5 12 12 H 1.48505 * 109.47110 * 240.00254 * 9 7 5 13 13 C 1.55153 * 111.00001 * 123.90133 * 2 1 3 14 14 C 1.54322 * 102.94155 * 82.57382 * 13 2 1 15 15 N 1.47018 * 107.27481 * 22.18807 * 14 13 2 16 16 C 1.34779 * 125.65232 * 181.02411 * 15 14 13 17 17 O 1.21283 * 120.00173 * 174.94071 * 16 15 14 18 18 C 1.50700 * 119.99724 * 355.21515 * 16 15 14 19 19 H 1.08996 * 109.70171 * 49.44638 * 18 16 15 20 20 C 1.53465 * 109.70742 * 288.86387 * 18 16 15 21 21 O 1.43172 * 108.23940 * 180.61256 * 20 18 16 22 22 C 1.36110 * 116.72115 * 46.18104 * 21 20 18 23 23 C 1.38704 * 119.39141 * 162.84966 * 22 21 20 24 24 C 1.38191 * 120.06750 * 179.86095 * 23 22 21 25 25 C 1.38248 * 120.11254 * 359.96763 * 24 23 22 26 26 C 1.38198 * 120.11449 * 0.05730 * 25 24 23 27 27 C 1.38699 * 120.06700 * 0.02569 * 26 25 24 28 28 O 1.36112 * 119.39704 * 179.80600 * 27 26 25 29 29 C 1.47428 * 108.70056 * 1.28889 * 15 14 13 30 30 H 1.09006 * 109.47220 * 297.55377 * 1 2 3 31 31 H 1.09000 * 109.47119 * 57.54933 * 1 2 3 32 32 H 1.08994 * 109.47841 * 177.55434 * 1 2 3 33 33 H 1.08997 * 109.46879 * 182.44919 * 3 2 1 34 34 H 1.08997 * 109.47305 * 302.44904 * 3 2 1 35 35 H 0.97007 * 119.99587 * 359.97438 * 4 3 2 36 36 H 0.97008 * 119.99578 * 180.02562 * 8 7 5 37 37 H 1.09004 * 110.72596 * 324.20772 * 13 2 1 38 38 H 1.09002 * 110.87372 * 201.00440 * 13 2 1 39 39 H 1.09002 * 109.88192 * 262.76706 * 14 13 2 40 40 H 1.09000 * 110.01375 * 141.68242 * 14 13 2 41 41 H 1.09000 * 109.71288 * 300.24801 * 20 18 16 42 42 H 1.09009 * 109.70817 * 60.87816 * 20 18 16 43 43 H 1.08009 * 119.96378 * 359.83523 * 23 22 21 44 44 H 1.08001 * 119.94027 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.94313 * 180.02562 * 25 24 23 46 46 H 1.07996 * 119.96679 * 180.02562 * 26 25 24 47 47 H 1.08996 * 110.36577 * 94.48327 * 29 15 14 48 48 H 1.09000 * 110.36955 * 216.80592 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 7 1.6538 2.1134 1.2246 5 6 2.0268 3.4121 1.4467 6 1 2.6327 3.9319 0.7192 7 6 1.6261 4.0606 2.6068 8 7 0.8881 3.4271 3.4935 9 14 2.1355 5.8321 2.9100 10 1 2.9570 6.3130 1.7703 11 1 0.9236 6.6805 3.0387 12 1 2.9304 5.9112 4.1619 13 6 2.0860 -0.8079 1.2022 14 6 2.0284 -2.2646 0.6960 15 7 2.0138 -2.2159 -0.7733 16 6 1.9470 -3.2829 -1.5940 17 8 1.8488 -3.1213 -2.7920 18 6 1.9880 -4.6768 -1.0226 19 1 1.2694 -4.7610 -0.2074 20 6 3.3992 -4.9813 -0.5020 21 8 3.4064 -6.3147 0.0194 22 6 2.8209 -7.2749 -0.7473 23 6 3.0965 -8.6104 -0.4938 24 6 2.5075 -9.5968 -1.2617 25 6 1.6417 -9.2556 -2.2841 26 6 1.3633 -7.9268 -2.5424 27 6 1.9523 -6.9318 -1.7765 28 8 1.6715 -5.6273 -2.0454 29 6 2.0907 -0.8070 -1.2003 30 1 -0.3634 0.4754 0.9111 31 1 -0.3633 0.5514 -0.8672 32 1 -0.3634 -1.0266 -0.0438 33 1 3.1649 1.4019 -0.0439 34 1 1.6909 1.9654 -0.8672 35 1 1.1099 1.6465 1.8781 36 1 0.6078 3.8804 4.3040 37 1 1.4522 -0.6792 2.0797 38 1 3.1129 -0.5171 1.4240 39 1 1.1217 -2.7479 1.0600 40 1 2.9047 -2.8140 1.0400 41 1 4.1171 -4.9028 -1.3185 42 1 3.6602 -4.2759 0.2869 43 1 3.7724 -8.8796 0.3045 44 1 2.7239 -10.6361 -1.0627 45 1 1.1827 -10.0287 -2.8823 46 1 0.6863 -7.6630 -3.3414 47 1 3.1252 -0.5267 -1.3988 48 1 1.4763 -0.6449 -2.0860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754713155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:59 Heat of formation + Delta-G solvation = -58.050237 kcal Electronic energy + Delta-G solvation = -30409.202753 eV Core-core repulsion = 26237.431543 eV Total energy + Delta-G solvation = -4171.771211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83203 -40.29213 -38.45004 -37.85442 -37.36534 -34.99239 -33.01662 -31.73359 -31.01521 -30.34489 -29.58157 -28.96230 -26.90689 -25.91074 -25.12459 -23.29079 -23.08953 -22.56967 -21.52223 -19.81897 -19.16712 -18.90783 -18.13900 -17.38801 -17.21463 -16.64770 -16.22552 -15.91772 -15.62936 -15.09853 -14.99603 -14.62463 -14.60259 -14.25700 -14.14433 -14.07011 -13.97762 -13.84423 -13.19326 -12.90661 -12.83970 -12.63538 -12.44682 -12.29179 -12.14829 -11.79398 -11.72321 -11.54156 -11.51619 -11.09383 -10.95095 -10.88037 -10.65176 -10.44126 -10.34155 -10.08604 -9.95521 -9.72009 -9.02540 -8.93702 -8.82809 -8.45088 -6.97714 -5.82478 -3.10675 0.92730 0.93491 2.06428 2.21688 2.66475 3.14558 3.36426 3.39874 3.46264 3.47942 3.75075 3.99010 4.20744 4.29788 4.46031 4.55040 4.58407 4.64136 4.72815 4.88294 4.93750 4.96034 5.02758 5.05657 5.15706 5.28393 5.39052 5.45595 5.52906 5.64755 5.75023 5.76932 5.80433 5.85056 5.88356 6.02555 6.09978 6.14021 6.18233 6.24629 6.31067 6.39096 6.49827 6.56099 6.66948 6.75312 7.00771 7.21975 7.66236 7.81510 8.36582 9.48540 10.04807 10.39853 11.40418 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.030589 B = 0.001968 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.134933 B =14225.899519 C =14639.484217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.728 5.728 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.115 4.115 14 C 0.090 3.910 15 N -0.608 5.608 16 C 0.539 3.461 17 O -0.513 6.513 18 C 0.039 3.961 19 H 0.109 0.891 20 C 0.034 3.966 21 O -0.299 6.299 22 C 0.045 3.955 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.111 4.111 27 C 0.054 3.946 28 O -0.280 6.280 29 C 0.118 3.882 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.075 0.925 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -25.670 -7.653 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.079 4.079 3 C 0.041 3.959 4 N -0.373 5.373 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.152 4.152 14 C -0.032 4.032 15 N -0.344 5.344 16 C 0.324 3.676 17 O -0.387 6.387 18 C -0.021 4.021 19 H 0.127 0.873 20 C -0.042 4.042 21 O -0.214 6.214 22 C 0.001 3.999 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.133 4.133 26 C -0.130 4.130 27 C 0.009 3.991 28 O -0.193 6.193 29 C -0.003 4.003 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.154 0.846 47 H 0.093 0.907 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.040 -25.421 -8.378 26.938 hybrid contribution 0.053 1.038 0.601 1.201 sum 3.094 -24.383 -7.776 25.779 Atomic orbital electron populations 1.21677 0.93212 1.00585 1.03215 1.21993 0.96518 0.96110 0.93239 1.20546 0.96195 0.88003 0.91143 1.42305 1.63186 1.12104 1.19682 1.19263 1.26364 0.88702 1.02642 0.91130 1.24723 1.00632 0.98383 0.97191 1.69657 1.41104 1.36462 1.10966 0.86126 0.77662 0.84821 0.77626 1.20569 1.21895 1.21895 1.22673 1.03296 0.90755 0.98517 1.22359 1.01479 1.00142 0.79238 1.48370 1.72355 1.06375 1.07280 1.19143 0.77963 0.84124 0.86332 1.90766 1.48081 1.85498 1.14393 1.22863 0.99107 0.88774 0.91376 0.87307 1.23598 0.95222 0.83249 1.02154 1.86350 1.74934 1.16032 1.44055 1.18979 0.96197 0.90003 0.94763 1.20464 1.01910 0.88926 1.01752 1.20940 0.97738 0.99138 0.95773 1.20943 0.98932 0.95081 0.98330 1.20488 1.00836 0.90787 1.00879 1.19024 0.97701 0.84268 0.98154 1.86399 1.80080 1.12879 1.39977 1.22446 1.01553 0.78052 0.98287 0.91010 0.92523 0.93646 0.95980 0.95894 0.78107 0.93562 0.89100 0.89795 0.91075 0.91348 0.89653 0.85116 0.84662 0.84969 0.84927 0.84572 0.90706 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.41 37.16 0.31 -1.59 16 2 C -0.08 -1.11 0.62 -152.25 -0.09 -1.21 16 3 C 0.17 3.11 5.23 -4.04 -0.02 3.08 16 4 N -0.73 -17.00 5.17 -59.91 -0.31 -17.31 16 5 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 9 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C -0.11 -1.46 5.38 -24.90 -0.13 -1.59 16 14 C 0.09 0.90 5.84 -3.07 -0.02 0.88 16 15 N -0.61 -7.31 3.31 -170.39 -0.56 -7.88 16 16 C 0.54 7.24 7.18 -10.98 -0.08 7.16 16 17 O -0.51 -8.93 16.77 -14.00 -0.23 -9.16 16 18 C 0.04 0.44 2.81 -27.64 -0.08 0.37 16 19 H 0.11 1.06 7.90 -51.93 -0.41 0.65 16 20 C 0.03 0.32 6.46 37.40 0.24 0.56 16 21 O -0.30 -3.20 10.42 -32.86 -0.34 -3.54 16 22 C 0.05 0.49 6.49 -39.14 -0.25 0.24 16 23 C -0.11 -0.97 9.96 -39.43 -0.39 -1.36 16 24 C -0.12 -0.83 10.04 -39.59 -0.40 -1.23 16 25 C -0.11 -0.85 10.04 -39.59 -0.40 -1.24 16 26 C -0.11 -1.07 9.96 -39.43 -0.39 -1.46 16 27 C 0.05 0.63 6.49 -39.14 -0.25 0.37 16 28 O -0.28 -3.74 9.63 -46.98 -0.45 -4.20 16 29 C 0.12 1.56 5.87 -2.41 -0.01 1.55 16 30 H 0.07 1.19 7.20 -51.93 -0.37 0.82 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 33 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 9.33 6.37 -40.82 -0.26 9.07 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 38 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 39 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.07 0.53 6.07 -51.93 -0.32 0.22 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.13 0.95 5.88 -51.92 -0.31 0.64 16 43 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 45 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 46 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 47 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 48 H 0.08 1.15 7.91 -51.93 -0.41 0.74 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -32.85 387.75 -9.66 -42.51 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.08 Total: 5.76 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.22 Total: -2.47 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.15 Total: -51.57 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.03 Total: -16.90 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.85 -9.66 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754713155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.539 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds