Wall clock time and date at job start Sat Apr 11 2020 07:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.91602 * 2 1 4 4 N 1.46500 * 109.47568 * 62.44979 * 3 2 1 5 5 C 1.36928 * 120.00500 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.38817 * 120.00141 * 179.97438 * 5 4 3 8 8 N 1.31615 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99948 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47102 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46986 * 120.00080 * 9 7 5 12 12 H 1.48505 * 109.47110 * 240.00254 * 9 7 5 13 13 C 1.55153 * 111.00001 * 123.90133 * 2 1 3 14 14 C 1.54322 * 102.94155 * 82.57382 * 13 2 1 15 15 N 1.47018 * 107.27481 * 22.18807 * 14 13 2 16 16 C 1.34779 * 125.65232 * 181.02411 * 15 14 13 17 17 O 1.21283 * 120.00173 * 174.94071 * 16 15 14 18 18 C 1.50700 * 119.99724 * 355.21515 * 16 15 14 19 19 H 1.08996 * 109.70171 * 49.44638 * 18 16 15 20 20 C 1.53465 * 109.70742 * 288.86387 * 18 16 15 21 21 O 1.43172 * 108.23940 * 180.61256 * 20 18 16 22 22 C 1.36110 * 116.72115 * 46.18104 * 21 20 18 23 23 C 1.38704 * 119.39141 * 162.84966 * 22 21 20 24 24 C 1.38191 * 120.06750 * 179.86095 * 23 22 21 25 25 C 1.38248 * 120.11254 * 359.96763 * 24 23 22 26 26 C 1.38198 * 120.11449 * 0.05730 * 25 24 23 27 27 C 1.38699 * 120.06700 * 0.02569 * 26 25 24 28 28 O 1.36112 * 119.39704 * 179.80600 * 27 26 25 29 29 C 1.47428 * 108.70056 * 1.28889 * 15 14 13 30 30 H 1.09006 * 109.47220 * 297.55377 * 1 2 3 31 31 H 1.09000 * 109.47119 * 57.54933 * 1 2 3 32 32 H 1.08994 * 109.47841 * 177.55434 * 1 2 3 33 33 H 1.08997 * 109.46879 * 182.44919 * 3 2 1 34 34 H 1.08997 * 109.47305 * 302.44904 * 3 2 1 35 35 H 0.97007 * 119.99587 * 359.97438 * 4 3 2 36 36 H 0.97008 * 119.99578 * 180.02562 * 8 7 5 37 37 H 1.09004 * 110.72596 * 324.20772 * 13 2 1 38 38 H 1.09002 * 110.87372 * 201.00440 * 13 2 1 39 39 H 1.09002 * 109.88192 * 262.76706 * 14 13 2 40 40 H 1.09000 * 110.01375 * 141.68242 * 14 13 2 41 41 H 1.09000 * 109.71288 * 300.24801 * 20 18 16 42 42 H 1.09009 * 109.70817 * 60.87816 * 20 18 16 43 43 H 1.08009 * 119.96378 * 359.83523 * 23 22 21 44 44 H 1.08001 * 119.94027 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.94313 * 180.02562 * 25 24 23 46 46 H 1.07996 * 119.96679 * 180.02562 * 26 25 24 47 47 H 1.08996 * 110.36577 * 94.48327 * 29 15 14 48 48 H 1.09000 * 110.36955 * 216.80592 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 7 1.6538 2.1134 1.2246 5 6 2.0268 3.4121 1.4467 6 1 2.6327 3.9319 0.7192 7 6 1.6261 4.0606 2.6068 8 7 0.8881 3.4271 3.4935 9 14 2.1355 5.8321 2.9100 10 1 2.9570 6.3130 1.7703 11 1 0.9236 6.6805 3.0387 12 1 2.9304 5.9112 4.1619 13 6 2.0860 -0.8079 1.2022 14 6 2.0284 -2.2646 0.6960 15 7 2.0138 -2.2159 -0.7733 16 6 1.9470 -3.2829 -1.5940 17 8 1.8488 -3.1213 -2.7920 18 6 1.9880 -4.6768 -1.0226 19 1 1.2694 -4.7610 -0.2074 20 6 3.3992 -4.9813 -0.5020 21 8 3.4064 -6.3147 0.0194 22 6 2.8209 -7.2749 -0.7473 23 6 3.0965 -8.6104 -0.4938 24 6 2.5075 -9.5968 -1.2617 25 6 1.6417 -9.2556 -2.2841 26 6 1.3633 -7.9268 -2.5424 27 6 1.9523 -6.9318 -1.7765 28 8 1.6715 -5.6273 -2.0454 29 6 2.0907 -0.8070 -1.2003 30 1 -0.3634 0.4754 0.9111 31 1 -0.3633 0.5514 -0.8672 32 1 -0.3634 -1.0266 -0.0438 33 1 3.1649 1.4019 -0.0439 34 1 1.6909 1.9654 -0.8672 35 1 1.1099 1.6465 1.8781 36 1 0.6078 3.8804 4.3040 37 1 1.4522 -0.6792 2.0797 38 1 3.1129 -0.5171 1.4240 39 1 1.1217 -2.7479 1.0600 40 1 2.9047 -2.8140 1.0400 41 1 4.1171 -4.9028 -1.3185 42 1 3.6602 -4.2759 0.2869 43 1 3.7724 -8.8796 0.3045 44 1 2.7239 -10.6361 -1.0627 45 1 1.1827 -10.0287 -2.8823 46 1 0.6863 -7.6630 -3.3414 47 1 3.1252 -0.5267 -1.3988 48 1 1.4763 -0.6449 -2.0860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754713155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:58 Heat of formation + Delta-G solvation = -77.733347 kcal Electronic energy + Delta-G solvation = -30410.056277 eV Core-core repulsion = 26237.431543 eV Total energy + Delta-G solvation = -4172.624734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.63044 -41.30931 -39.49743 -38.57061 -38.25972 -36.54983 -34.53396 -32.80986 -31.86832 -31.66291 -30.66897 -29.76268 -28.04909 -27.29886 -26.25225 -24.48691 -24.06530 -23.82041 -22.29180 -20.76434 -20.25323 -19.84105 -19.21911 -18.90246 -18.16632 -17.57564 -17.24620 -16.84010 -16.58880 -16.35100 -15.93447 -15.72540 -15.53690 -15.35389 -15.28681 -15.22821 -15.00168 -14.83996 -14.62662 -14.30965 -13.89753 -13.85439 -13.46909 -13.18303 -12.99487 -12.92801 -12.89544 -12.83116 -12.65346 -12.43116 -12.24946 -12.09342 -12.07862 -11.71578 -11.62903 -11.54206 -11.48534 -11.07847 -10.92476 -9.85003 -9.68719 -9.16330 -8.94994 -7.93023 -5.19695 0.26809 0.27677 1.10833 1.25023 1.48755 1.49907 1.58977 1.93514 2.30499 2.57538 2.71330 2.95440 3.08346 3.40721 3.46017 3.50512 3.52128 3.53517 3.79760 3.93685 4.10602 4.14791 4.19849 4.23414 4.29018 4.31715 4.35086 4.40722 4.50857 4.58883 4.66629 4.75131 4.77893 4.84617 4.97923 5.00879 5.04236 5.13972 5.15171 5.19095 5.22415 5.31546 5.42898 5.50162 5.53546 5.67151 5.76543 6.20969 6.28540 6.30140 6.78382 7.37920 8.13226 8.38068 9.30367 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.030589 B = 0.001968 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.134933 B =14225.899519 C =14639.484217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C 0.168 3.832 4 N -0.736 5.736 5 C -0.240 4.240 6 H 0.073 0.927 7 C -0.072 4.072 8 N -0.965 5.965 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.296 1.296 12 H -0.294 1.294 13 C -0.111 4.111 14 C 0.094 3.906 15 N -0.602 5.602 16 C 0.541 3.459 17 O -0.560 6.560 18 C 0.043 3.957 19 H 0.126 0.874 20 C 0.038 3.962 21 O -0.305 6.305 22 C 0.025 3.975 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.109 4.109 26 C -0.127 4.127 27 C 0.025 3.975 28 O -0.309 6.309 29 C 0.124 3.876 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.017 0.983 35 H 0.378 0.622 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.166 0.834 45 H 0.163 0.837 46 H 0.137 0.863 47 H 0.083 0.917 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -27.913 -7.370 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C 0.041 3.959 4 N -0.379 5.379 5 C -0.372 4.372 6 H 0.091 0.909 7 C -0.265 4.265 8 N -0.616 5.616 9 Si 0.797 3.203 10 H -0.193 1.193 11 H -0.224 1.224 12 H -0.221 1.221 13 C -0.149 4.149 14 C -0.028 4.028 15 N -0.336 5.336 16 C 0.328 3.672 17 O -0.438 6.438 18 C -0.017 4.017 19 H 0.143 0.857 20 C -0.038 4.038 21 O -0.219 6.219 22 C -0.020 4.020 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.145 4.145 27 C -0.020 4.020 28 O -0.223 6.223 29 C 0.002 3.998 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.212 0.788 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.174 0.826 43 H 0.170 0.830 44 H 0.184 0.816 45 H 0.180 0.820 46 H 0.155 0.845 47 H 0.101 0.899 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.982 -27.678 -8.102 29.113 hybrid contribution -0.234 1.648 0.435 1.721 sum 3.748 -26.030 -7.667 27.393 Atomic orbital electron populations 1.21589 0.93435 1.01252 1.01733 1.21804 0.96185 0.94196 0.95042 1.20648 0.96442 0.89958 0.88808 1.42437 1.62999 1.11447 1.21037 1.19624 1.25256 0.90043 1.02291 0.90903 1.25450 1.01529 1.02031 0.97463 1.69791 1.42717 1.37785 1.11352 0.85159 0.77028 0.80573 0.77507 1.19339 1.22387 1.22091 1.22600 1.02667 0.92240 0.97407 1.22486 1.04021 0.98634 0.77612 1.48334 1.71505 1.05597 1.08139 1.19510 0.76899 0.85037 0.85727 1.90741 1.50442 1.86214 1.16450 1.22889 1.00686 0.87024 0.91143 0.85664 1.23661 0.93853 0.83514 1.02731 1.86331 1.75051 1.16267 1.44249 1.19266 0.96749 0.90880 0.95069 1.20825 1.02122 0.88340 1.02338 1.21385 0.96314 1.00463 0.94581 1.21337 0.98346 0.94665 0.98340 1.20760 1.01170 0.91640 1.00971 1.19343 0.99258 0.83813 0.99565 1.86337 1.80805 1.14020 1.41182 1.22288 1.01697 0.78715 0.97144 0.93169 0.93165 0.91947 0.95396 0.96502 0.78828 0.94084 0.89957 0.90110 0.89240 0.88153 0.90393 0.82608 0.83048 0.81621 0.81976 0.84497 0.89904 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.59 8.41 71.98 0.61 -2.99 16 2 C -0.07 -2.01 0.62 -50.72 -0.03 -2.04 16 3 C 0.17 6.16 5.23 86.38 0.45 6.61 16 4 N -0.74 -34.59 5.17 -343.47 -1.78 -36.37 16 5 C -0.24 -12.85 9.99 84.04 0.84 -12.01 16 6 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 8 N -0.97 -56.78 13.06 21.65 0.28 -56.50 16 9 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 13 C -0.11 -2.68 5.38 31.78 0.17 -2.51 16 14 C 0.09 1.64 5.84 86.73 0.51 2.14 16 15 N -0.60 -13.59 3.31 -811.36 -2.69 -16.28 16 16 C 0.54 14.22 7.18 87.66 0.63 14.85 16 17 O -0.56 -19.86 16.77 15.66 0.26 -19.60 16 18 C 0.04 0.92 2.81 30.00 0.08 1.01 16 19 H 0.13 2.23 7.90 -2.39 -0.02 2.21 16 20 C 0.04 0.67 6.46 72.14 0.47 1.14 16 21 O -0.30 -6.06 10.42 -82.59 -0.86 -6.92 16 22 C 0.02 0.51 6.49 22.56 0.15 0.66 16 23 C -0.12 -1.78 9.96 22.37 0.22 -1.55 16 24 C -0.11 -1.21 10.04 22.26 0.22 -0.99 16 25 C -0.11 -1.34 10.04 22.26 0.22 -1.12 16 26 C -0.13 -2.35 9.96 22.37 0.22 -2.12 16 27 C 0.02 0.57 6.49 22.56 0.15 0.71 16 28 O -0.31 -8.36 9.63 -69.12 -0.67 -9.03 16 29 C 0.12 3.17 5.87 86.93 0.51 3.68 16 30 H 0.05 1.69 7.20 -2.38 -0.02 1.67 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.59 7.89 -2.39 -0.02 1.57 16 33 H 0.03 1.01 8.10 -2.39 -0.02 0.99 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.38 18.64 6.37 -92.70 -0.59 18.05 16 36 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 37 H 0.08 2.16 7.95 -2.38 -0.02 2.15 16 38 H 0.08 2.02 8.04 -2.39 -0.02 2.00 16 39 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.10 1.19 6.07 -2.39 -0.01 1.17 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.16 1.80 5.88 -2.38 -0.01 1.79 16 43 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 44 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 45 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 46 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 47 H 0.08 2.01 8.01 -2.39 -0.02 1.99 16 48 H 0.07 2.01 7.91 -2.39 -0.02 1.99 16 Total: -1.00 -72.45 387.75 2.86 -69.59 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.39 Total: 26.04 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.89 Total: 1.93 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -4.18 Total: -109.14 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.26 Total: -35.55 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -72.45 2.86 -69.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754713155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.139 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds