Wall clock time and date at job start Sat Apr 11 2020 07:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.29243 * 2 1 4 4 N 1.46500 * 109.46941 * 59.29752 * 3 2 1 5 5 C 1.36943 * 119.99878 * 179.97438 * 4 3 2 6 6 H 1.07996 * 119.99698 * 0.02562 * 5 4 3 7 7 C 1.38809 * 119.99902 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00319 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00011 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99967 * 9 7 5 11 11 H 1.48503 * 109.47261 * 300.00148 * 9 7 5 12 12 H 1.48500 * 109.47454 * 180.02562 * 9 7 5 13 13 C 1.54617 * 110.32750 * 122.13567 * 2 1 3 14 14 C 1.55107 * 102.75942 * 97.20457 * 13 2 1 15 15 N 1.48110 * 103.31567 * 37.26715 * 14 13 2 16 16 C 1.34774 * 127.03862 * 140.80150 * 15 14 13 17 17 O 1.21280 * 120.00505 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99840 * 359.95248 * 16 15 14 19 19 H 1.09004 * 109.71175 * 304.41066 * 18 16 15 20 20 C 1.53478 * 109.71278 * 65.00246 * 18 16 15 21 21 O 1.43174 * 108.25352 * 179.44422 * 20 18 16 22 22 C 1.36107 * 116.71661 * 313.87022 * 21 20 18 23 23 C 1.38701 * 119.39826 * 197.05691 * 22 21 20 24 24 C 1.38196 * 120.06726 * 180.13678 * 23 22 21 25 25 C 1.38253 * 120.11680 * 0.02708 * 24 23 22 26 26 C 1.38196 * 120.10826 * 359.91504 * 25 24 23 27 27 C 1.38697 * 120.06842 * 0.02562 * 26 25 24 28 28 O 1.36107 * 119.39062 * 180.16263 * 27 26 25 29 29 C 1.47492 * 105.93229 * 320.76322 * 15 14 13 30 30 H 1.08998 * 109.46741 * 60.70015 * 1 2 3 31 31 H 1.09001 * 109.47192 * 180.70239 * 1 2 3 32 32 H 1.09007 * 109.46886 * 300.70325 * 1 2 3 33 33 H 1.09000 * 109.46906 * 299.30219 * 3 2 1 34 34 H 1.08992 * 109.47614 * 179.29953 * 3 2 1 35 35 H 0.97000 * 120.00415 * 359.97438 * 4 3 2 36 36 H 0.97001 * 119.99542 * 359.97438 * 8 7 5 37 37 H 1.09004 * 110.74185 * 215.48401 * 13 2 1 38 38 H 1.09006 * 110.74014 * 338.80749 * 13 2 1 39 39 H 1.08996 * 110.58740 * 278.82179 * 14 13 2 40 40 H 1.09003 * 110.82126 * 155.81573 * 14 13 2 41 41 H 1.09001 * 109.70710 * 299.13660 * 20 18 16 42 42 H 1.09000 * 109.70491 * 59.70694 * 20 18 16 43 43 H 1.08006 * 119.96676 * 0.15063 * 23 22 21 44 44 H 1.08007 * 119.94151 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.94312 * 179.90434 * 25 24 23 46 46 H 1.07996 * 119.96266 * 179.97438 * 26 25 24 47 47 H 1.09003 * 109.91107 * 266.09049 * 29 15 14 48 48 H 1.08995 * 110.07243 * 144.89771 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4351 0.0000 4 7 1.5686 2.1376 1.1876 5 6 1.9161 3.4446 1.4031 6 1 2.5526 3.9574 0.6972 7 6 1.4494 4.1104 2.5281 8 7 0.6732 3.4855 3.3880 9 14 1.9228 5.8934 2.8216 10 1 1.4449 6.7256 1.6882 11 1 3.4001 6.0024 2.9273 12 1 1.3004 6.3697 4.0829 13 6 2.0672 -0.7712 1.2277 14 6 2.3641 -2.1779 0.6456 15 7 2.8825 -1.8836 -0.7102 16 6 3.8937 -2.5078 -1.3459 17 8 4.2144 -2.1604 -2.4628 18 6 4.6265 -3.6371 -0.6686 19 1 5.0146 -3.2996 0.2924 20 6 3.6714 -4.8194 -0.4548 21 8 4.4012 -5.8768 0.1771 22 6 5.6255 -6.1695 -0.3403 23 6 6.2251 -7.3805 -0.0274 24 6 7.4692 -7.6908 -0.5429 25 6 8.1200 -6.7952 -1.3710 26 6 7.5277 -5.5874 -1.6877 27 6 6.2787 -5.2703 -1.1748 28 8 5.7067 -4.0784 -1.4983 29 6 2.0650 -0.7681 -1.2229 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3634 -1.0276 0.0126 32 1 -0.3633 0.5248 0.8837 33 1 1.7149 1.9502 -0.8962 34 1 3.1504 1.4196 0.0126 35 1 0.9966 1.6771 1.8214 36 1 0.4271 2.5598 3.2354 37 1 2.9796 -0.3093 1.6049 38 1 1.3100 -0.8273 2.0099 39 1 1.4504 -2.7695 0.5881 40 1 3.1173 -2.6929 1.2419 41 1 2.8431 -4.5119 0.1835 42 1 3.2875 -5.1603 -1.4163 43 1 5.7190 -8.0818 0.6195 44 1 7.9344 -8.6342 -0.2976 45 1 9.0929 -7.0399 -1.7710 46 1 8.0383 -4.8894 -2.3345 47 1 1.2330 -1.1569 -1.8101 48 1 2.6766 -0.1078 -1.8376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754713156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:07 Heat of formation + Delta-G solvation = -55.598739 kcal Electronic energy + Delta-G solvation = -30547.016882 eV Core-core repulsion = 26375.351976 eV Total energy + Delta-G solvation = -4171.664906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.84781 -40.29724 -38.51892 -37.87699 -37.39237 -35.18533 -33.25341 -31.78140 -31.02024 -30.25133 -29.57584 -28.99008 -26.74869 -25.85935 -24.97475 -23.38092 -23.17660 -22.68982 -21.58922 -19.90981 -19.17666 -18.95085 -18.15721 -17.39615 -17.27341 -16.74519 -16.32423 -15.98776 -15.52790 -15.26304 -15.11102 -14.71418 -14.68003 -14.36295 -14.20480 -13.90301 -13.80009 -13.68002 -13.41357 -13.28221 -12.91112 -12.57942 -12.46510 -12.41540 -12.28345 -11.91287 -11.72902 -11.56446 -11.52520 -11.02556 -10.96953 -10.77139 -10.57619 -10.47030 -10.29160 -10.05457 -9.98555 -9.22334 -9.03269 -8.93748 -8.91411 -8.45988 -7.04017 -6.13918 -3.13496 0.92255 0.92880 2.05155 2.19731 2.63082 3.09620 3.35911 3.50472 3.53462 3.70492 3.70843 3.96253 4.19317 4.27422 4.46765 4.51414 4.60904 4.65428 4.71016 4.83714 4.88274 4.94459 5.02233 5.04047 5.06881 5.18775 5.25673 5.44054 5.51959 5.59606 5.67839 5.71873 5.74788 5.78547 5.80058 5.82116 6.01061 6.08554 6.09906 6.21667 6.24261 6.31518 6.46445 6.48315 6.61350 6.69305 6.99748 7.19516 7.78229 7.79650 8.72517 9.18969 10.05239 10.20145 11.34539 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.002121 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.717383 B =13195.046785 C =13430.364290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C 0.172 3.828 4 N -0.739 5.739 5 C -0.330 4.330 6 H 0.063 0.937 7 C -0.045 4.045 8 N -0.944 5.944 9 Si 1.079 2.921 10 H -0.295 1.295 11 H -0.296 1.296 12 H -0.285 1.285 13 C -0.118 4.118 14 C 0.088 3.912 15 N -0.613 5.613 16 C 0.543 3.457 17 O -0.511 6.511 18 C 0.039 3.961 19 H 0.112 0.888 20 C 0.033 3.967 21 O -0.300 6.300 22 C 0.045 3.955 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.111 4.111 27 C 0.053 3.947 28 O -0.279 6.279 29 C 0.120 3.880 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.368 0.632 36 H 0.253 0.747 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.072 0.928 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.980 -24.419 -7.173 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C 0.045 3.955 4 N -0.386 5.386 5 C -0.461 4.461 6 H 0.082 0.918 7 C -0.242 4.242 8 N -0.590 5.590 9 Si 0.910 3.090 10 H -0.223 1.223 11 H -0.223 1.223 12 H -0.210 1.210 13 C -0.156 4.156 14 C -0.035 4.035 15 N -0.348 5.348 16 C 0.328 3.672 17 O -0.386 6.386 18 C -0.021 4.021 19 H 0.129 0.871 20 C -0.043 4.043 21 O -0.214 6.214 22 C 0.000 4.000 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.129 4.129 27 C 0.008 3.992 28 O -0.192 6.192 29 C -0.002 4.002 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.202 0.798 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.148 0.852 42 H 0.103 0.897 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.155 0.845 47 H 0.090 0.910 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.157 -22.809 -6.973 25.207 hybrid contribution -0.079 -1.226 -0.835 1.486 sum 8.077 -24.036 -7.808 26.532 Atomic orbital electron populations 1.21814 0.93111 1.00806 1.03222 1.21699 0.96493 0.96609 0.93458 1.20640 0.95940 0.87894 0.91073 1.42337 1.60533 1.11416 1.24279 1.20027 1.28838 0.88721 1.08532 0.91849 1.25751 0.98844 1.06062 0.93565 1.70908 1.38074 1.12350 1.37621 0.83247 0.75368 0.74446 0.75930 1.22267 1.22301 1.21033 1.22811 1.02867 0.92676 0.97283 1.22879 0.99157 0.99081 0.82346 1.48664 1.32830 1.35209 1.18134 1.19104 0.79480 0.82780 0.85803 1.90772 1.64554 1.64766 1.18469 1.22833 0.89177 0.94706 0.95383 0.87057 1.23634 0.93808 0.85802 1.01070 1.86344 1.27417 1.52560 1.55079 1.18971 0.86490 0.95001 0.99528 1.20457 0.96327 0.93879 1.02382 1.20946 0.94427 1.00108 0.98094 1.20951 1.00312 0.93205 0.98773 1.20499 0.91892 0.98463 1.02069 1.19030 0.94244 0.85621 1.00277 1.86409 1.46770 1.33868 1.52168 1.22203 0.94067 0.87411 0.96534 0.92387 0.93187 0.91237 0.95966 0.96123 0.79834 0.93562 0.89882 0.89485 0.90215 0.90207 0.85240 0.89704 0.84666 0.84950 0.84892 0.84521 0.90997 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.04 37.16 0.30 -1.49 16 2 C -0.08 -1.17 0.67 -153.13 -0.10 -1.27 16 3 C 0.17 3.35 4.83 -4.04 -0.02 3.33 16 4 N -0.74 -17.70 5.12 -59.91 -0.31 -18.00 16 5 C -0.33 -9.17 9.99 -15.06 -0.15 -9.32 16 6 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 8 N -0.94 -28.45 13.70 55.49 0.76 -27.69 16 9 Si 1.08 25.73 29.92 -169.99 -5.09 20.64 16 10 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C -0.12 -1.52 5.67 -24.77 -0.14 -1.66 16 14 C 0.09 0.84 5.42 -2.04 -0.01 0.83 16 15 N -0.61 -7.50 3.29 -169.66 -0.56 -8.06 16 16 C 0.54 7.54 7.29 -10.99 -0.08 7.46 16 17 O -0.51 -9.20 16.86 -14.16 -0.24 -9.44 16 18 C 0.04 0.46 2.70 -27.64 -0.07 0.38 16 19 H 0.11 1.16 7.71 -51.93 -0.40 0.76 16 20 C 0.03 0.31 6.35 37.41 0.24 0.54 16 21 O -0.30 -3.17 10.42 -32.86 -0.34 -3.52 16 22 C 0.04 0.49 6.49 -39.14 -0.25 0.24 16 23 C -0.11 -0.97 9.96 -39.43 -0.39 -1.37 16 24 C -0.12 -0.85 10.04 -39.59 -0.40 -1.25 16 25 C -0.11 -0.87 10.04 -39.59 -0.40 -1.27 16 26 C -0.11 -1.10 9.96 -39.43 -0.39 -1.49 16 27 C 0.05 0.64 6.49 -39.14 -0.25 0.38 16 28 O -0.28 -3.83 9.62 -47.05 -0.45 -4.28 16 29 C 0.12 1.59 6.28 -2.98 -0.02 1.57 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.09 6.87 -51.93 -0.36 0.74 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 35 H 0.37 8.78 5.05 -40.82 -0.21 8.57 16 36 H 0.25 7.43 6.77 -40.82 -0.28 7.15 16 37 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 38 H 0.09 1.08 7.85 -51.93 -0.41 0.68 16 39 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.08 0.63 6.67 -51.93 -0.35 0.28 16 41 H 0.13 0.88 5.99 -51.93 -0.31 0.57 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 44 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 47 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 48 H 0.08 1.23 7.60 -51.93 -0.39 0.83 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -34.88 384.85 -9.61 -44.49 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.94 Total: 5.81 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.25 Total: -5.75 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.10 Total: -53.76 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.03 Total: -17.24 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.09 Total: 20.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.88 -9.61 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754713156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.112 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds