Wall clock time and date at job start Sat Apr 11 2020 07:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.39081 * 2 1 4 4 C 1.54565 * 110.44347 * 237.44366 * 2 1 3 5 5 C 1.54490 * 102.14625 * 268.10740 * 4 2 1 6 6 C 1.53004 * 110.46368 * 225.76782 * 5 4 2 7 7 N 1.46509 * 110.36757 * 103.49372 * 5 4 2 8 8 C 1.34776 * 119.99774 * 183.14568 * 7 5 4 9 9 O 1.21583 * 120.00055 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99628 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00019 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47515 * 179.97438 * 11 10 8 13 13 C 1.38635 * 119.74614 * 269.72389 * 12 11 10 14 14 C 1.37623 * 120.24578 * 179.76117 * 13 12 11 15 15 C 1.40715 * 119.74611 * 0.48350 * 14 13 12 16 16 C 1.41396 * 120.24816 * 179.78747 * 15 14 13 17 17 H 1.07994 * 120.00603 * 204.37166 * 16 15 14 18 18 C 1.39952 * 119.99536 * 24.37121 * 16 15 14 19 19 N 1.30823 * 119.99912 * 17.85647 * 18 16 15 20 20 Si 1.86805 * 119.99593 * 197.86166 * 18 16 15 21 21 H 1.48502 * 109.47140 * 60.00002 * 20 18 16 22 22 H 1.48502 * 109.46639 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47105 * 299.99774 * 20 18 16 24 24 C 1.40717 * 119.50908 * 359.76859 * 15 14 13 25 25 C 1.37616 * 119.74698 * 359.97438 * 24 15 14 26 26 C 1.51320 * 104.82608 * 344.65349 * 5 4 2 27 27 O 1.20834 * 125.09793 * 177.68170 * 26 5 4 28 28 O 1.34068 * 109.81188 * 357.68907 * 26 5 4 29 29 H 1.08992 * 109.47771 * 299.02941 * 1 2 3 30 30 H 1.08999 * 109.47347 * 59.03655 * 1 2 3 31 31 H 1.09007 * 109.47360 * 179.02941 * 1 2 3 32 32 H 1.08999 * 109.47250 * 180.96161 * 3 2 1 33 33 H 1.08994 * 109.47579 * 300.96700 * 3 2 1 34 34 H 1.09005 * 109.47112 * 60.96962 * 3 2 1 35 35 H 1.09004 * 110.87049 * 149.94420 * 4 2 1 36 36 H 1.08998 * 110.86758 * 26.27306 * 4 2 1 37 37 H 1.08994 * 109.47123 * 298.40088 * 6 5 4 38 38 H 1.09001 * 109.46716 * 58.39899 * 6 5 4 39 39 H 1.08994 * 109.47401 * 178.39870 * 6 5 4 40 40 H 0.97000 * 119.99583 * 3.13973 * 7 5 4 41 41 H 0.96999 * 120.00311 * 359.97438 * 10 8 7 42 42 H 1.09002 * 109.47448 * 59.99388 * 11 10 8 43 43 H 1.09002 * 109.46816 * 299.99766 * 11 10 8 44 44 H 1.07997 * 119.87915 * 359.97438 * 13 12 11 45 45 H 1.08003 * 120.12695 * 180.22757 * 14 13 12 46 46 H 0.97004 * 119.99330 * 180.02562 * 19 18 16 47 47 H 1.08003 * 120.12563 * 180.02562 * 24 15 14 48 48 H 1.08000 * 119.87757 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 6 2.0698 -0.7794 -1.2207 5 6 2.2301 -2.2062 -0.6505 6 6 3.5824 -2.7957 -1.0563 7 7 1.1396 -3.0668 -1.1159 8 6 1.0542 -4.3401 -0.6824 9 8 1.8824 -4.7747 0.0944 10 7 0.0507 -5.1316 -1.1102 11 6 -0.0425 -6.5155 -0.6387 12 6 -1.2441 -7.1785 -1.2611 13 6 -2.4703 -7.1249 -0.6165 14 6 -3.5755 -7.7226 -1.1781 15 6 -3.4552 -8.3987 -2.4063 16 6 -4.5827 -9.0203 -2.9906 17 1 -4.4502 -9.8399 -3.6812 18 6 -5.8706 -8.5735 -2.6738 19 7 -6.0394 -7.3935 -2.1348 20 14 -7.3485 -9.6622 -3.0207 21 1 -7.2143 -10.9341 -2.2661 22 1 -8.5882 -8.9636 -2.5960 23 1 -7.4177 -9.9543 -4.4749 24 6 -2.2044 -8.4512 -3.0489 25 6 -1.1140 -7.8418 -2.4715 26 6 2.1603 -2.0331 0.8512 27 8 2.2067 -2.9323 1.6571 28 8 2.0392 -0.7326 1.1536 29 1 -0.3634 0.4986 0.8985 30 1 -0.3634 0.5287 -0.8812 31 1 -0.3634 -1.0276 -0.0174 32 1 3.1527 1.4167 -0.0172 33 1 1.6940 1.9590 -0.8811 34 1 1.7222 1.9485 0.8986 35 1 3.0315 -0.3795 -1.5424 36 1 1.3497 -0.7668 -2.0388 37 1 3.6370 -2.8654 -2.1426 38 1 4.3832 -2.1517 -0.6928 39 1 3.6904 -3.7897 -0.6225 40 1 0.4790 -2.7201 -1.7358 41 1 -0.6103 -4.7848 -1.7296 42 1 -0.1450 -6.5236 0.4465 43 1 0.8596 -7.0575 -0.9224 44 1 -2.5594 -6.6092 0.3282 45 1 -4.5306 -7.6764 -0.6760 46 1 -6.9321 -7.0840 -1.9149 47 1 -2.1008 -8.9670 -3.9921 48 1 -0.1529 -7.8811 -2.9627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772418809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:04 Heat of formation + Delta-G solvation = -94.744838 kcal Electronic energy + Delta-G solvation = -30306.109420 eV Core-core repulsion = 26132.747012 eV Total energy + Delta-G solvation = -4173.362408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.79913 -39.49370 -37.81551 -37.65842 -35.72464 -34.53558 -33.67342 -33.42216 -31.50107 -29.96513 -29.34153 -28.01063 -27.37564 -26.73551 -24.25298 -23.65214 -21.81250 -21.34942 -21.06487 -20.09676 -19.49746 -18.20030 -17.39508 -17.32193 -16.77222 -16.21172 -15.54227 -15.42408 -15.09608 -14.82552 -14.45390 -14.41906 -14.02055 -13.87960 -13.69239 -13.64200 -13.33261 -13.05608 -12.83777 -12.72033 -12.51437 -12.39654 -12.32260 -12.21557 -12.03595 -11.91340 -11.88341 -11.67688 -11.35594 -11.15398 -11.05536 -10.76757 -10.72209 -10.47644 -10.39317 -9.79988 -9.66236 -9.48473 -9.22950 -9.05687 -8.48740 -7.57481 -7.45768 -6.88040 -4.47279 1.89362 2.53313 2.91918 2.95513 2.98265 3.00711 3.03465 3.20188 3.37549 3.72395 3.78658 3.84375 4.06313 4.24424 4.39108 4.45252 4.67500 4.76893 5.02666 5.08303 5.18953 5.27130 5.27615 5.31675 5.37270 5.53246 5.60065 5.61050 5.72072 5.81350 5.97698 6.08850 6.25125 6.31274 6.32441 6.38038 6.66112 6.86440 6.92424 6.97085 7.07613 7.19250 7.26699 7.50918 7.53076 7.74074 7.94913 8.02347 8.18691 8.27972 8.53176 8.77974 8.86058 8.89161 10.05891 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002143 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.097480 B =13062.497849 C =13829.794030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 C -0.142 4.142 4 C -0.150 4.150 5 C 0.143 3.857 6 C -0.155 4.155 7 N -0.738 5.738 8 C 0.691 3.309 9 O -0.566 6.566 10 N -0.733 5.733 11 C 0.204 3.796 12 C -0.243 4.243 13 C -0.081 4.081 14 C -0.170 4.170 15 C 0.117 3.883 16 C -0.459 4.459 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.788 5.788 20 Si 0.909 3.091 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.230 4.230 25 C -0.069 4.069 26 C 0.467 3.533 27 O -0.404 6.404 28 O -0.344 6.344 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.399 0.601 41 H 0.395 0.605 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.118 0.882 46 H 0.282 0.718 47 H 0.092 0.908 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.176 17.882 -1.511 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 C -0.199 4.199 4 C -0.188 4.188 5 C 0.053 3.947 6 C -0.213 4.213 7 N -0.399 5.399 8 C 0.391 3.609 9 O -0.441 6.441 10 N -0.387 5.387 11 C 0.082 3.918 12 C -0.245 4.245 13 C -0.100 4.100 14 C -0.189 4.189 15 C 0.114 3.886 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.413 5.413 20 Si 0.733 3.267 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.250 4.250 25 C -0.088 4.088 26 C 0.302 3.698 27 O -0.280 6.280 28 O -0.261 6.261 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.234 0.766 41 H 0.228 0.772 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.111 0.889 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.832 17.250 -0.065 20.918 hybrid contribution -1.516 -0.066 -0.919 1.774 sum 10.316 17.184 -0.984 20.067 Atomic orbital electron populations 1.22287 0.92610 1.03743 1.03939 1.23040 0.94757 0.93029 0.82483 1.21870 1.02172 0.92278 1.03624 1.23407 1.04524 0.92568 0.98296 1.21275 0.90532 0.90706 0.92190 1.22117 0.92727 1.04051 1.02401 1.45133 1.30924 1.11494 1.52363 1.16172 0.82986 0.80452 0.81256 1.90979 1.42059 1.73656 1.37429 1.45717 1.28908 1.13536 1.50575 1.19804 0.96289 0.78400 0.97327 1.19008 0.94067 1.11473 0.99941 1.20577 0.92691 0.98874 0.97814 1.21314 0.97508 1.03578 0.96488 1.17665 0.91796 0.88900 0.90260 1.19627 0.90118 1.15491 1.23524 0.90315 1.25949 1.00960 0.94467 0.92908 1.69812 1.25023 1.15641 1.30810 0.86346 0.79412 0.80972 0.79925 1.18710 1.20269 1.18927 1.20973 0.94158 1.09109 1.00762 1.20407 0.96692 0.97257 0.94434 1.23299 0.73868 0.81480 0.91199 1.90828 1.40861 1.40019 1.56342 1.87119 1.77469 1.21198 1.40359 0.90792 0.89923 0.91560 0.91174 0.89944 0.90966 0.87569 0.87771 0.91047 0.91552 0.88909 0.76607 0.77153 0.92558 0.92602 0.89410 0.86398 0.90669 0.88933 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 8.77 37.15 0.33 -0.84 16 2 C 0.10 0.77 1.24 -89.80 -0.11 0.66 16 3 C -0.14 -0.68 8.92 37.16 0.33 -0.35 16 4 C -0.15 -0.93 5.54 -25.13 -0.14 -1.07 16 5 C 0.14 1.55 0.96 -131.88 -0.13 1.42 16 6 C -0.15 -1.66 8.39 37.16 0.31 -1.35 16 7 N -0.74 -8.62 5.15 -52.47 -0.27 -8.89 16 8 C 0.69 11.28 7.98 -86.92 -0.69 10.59 16 9 O -0.57 -11.46 12.16 -17.48 -0.21 -11.67 16 10 N -0.73 -11.87 5.55 -66.42 -0.37 -12.24 16 11 C 0.20 3.79 5.79 -5.20 -0.03 3.76 16 12 C -0.24 -5.04 5.27 -104.33 -0.55 -5.59 16 13 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 14 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 15 C 0.12 2.98 5.58 -106.82 -0.60 2.39 16 16 C -0.46 -11.71 9.06 -37.74 -0.34 -12.05 16 17 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 18 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.53 10.95 55.55 0.61 -18.92 16 20 Si 0.91 17.99 29.60 -169.99 -5.03 12.96 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 25 C -0.07 -1.47 9.67 -39.66 -0.38 -1.85 16 26 C 0.47 6.86 7.11 36.31 0.26 7.11 16 27 O -0.40 -7.93 15.50 -26.18 -0.41 -8.34 16 28 O -0.34 -4.20 10.48 -38.49 -0.40 -4.61 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.58 8.08 -51.92 -0.42 0.16 16 32 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.11 0.46 7.60 -51.93 -0.39 0.06 16 36 H 0.10 0.42 7.40 -51.93 -0.38 0.04 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.36 6.28 -51.93 -0.33 1.03 16 40 H 0.40 3.40 8.21 -40.82 -0.33 3.07 16 41 H 0.39 5.79 8.48 -40.82 -0.35 5.44 16 42 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 43 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 44 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.12 3.06 6.16 -52.48 -0.32 2.73 16 46 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 47 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 48 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -32.28 393.99 -10.23 -42.51 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -7.14 Total: 11.22 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.94 Total: -7.95 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.03 Total: -40.06 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.02 Total: -24.62 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.28 -10.23 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772418809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.235 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds