Wall clock time and date at job start Sat Apr 11 2020 07:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.39081 * 2 1 4 4 C 1.54565 * 110.44347 * 237.44366 * 2 1 3 5 5 C 1.54490 * 102.14625 * 268.10740 * 4 2 1 6 6 C 1.53004 * 110.46368 * 225.76782 * 5 4 2 7 7 N 1.46509 * 110.36757 * 103.49372 * 5 4 2 8 8 C 1.34776 * 119.99774 * 183.14568 * 7 5 4 9 9 O 1.21583 * 120.00055 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99628 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00019 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47515 * 179.97438 * 11 10 8 13 13 C 1.38635 * 119.74614 * 269.72389 * 12 11 10 14 14 C 1.37623 * 120.24578 * 179.76117 * 13 12 11 15 15 C 1.40715 * 119.74611 * 0.48350 * 14 13 12 16 16 C 1.41396 * 120.24816 * 179.78747 * 15 14 13 17 17 H 1.07994 * 120.00603 * 204.37166 * 16 15 14 18 18 C 1.39952 * 119.99536 * 24.37121 * 16 15 14 19 19 N 1.30823 * 119.99912 * 17.85647 * 18 16 15 20 20 Si 1.86805 * 119.99593 * 197.86166 * 18 16 15 21 21 H 1.48502 * 109.47140 * 60.00002 * 20 18 16 22 22 H 1.48502 * 109.46639 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47105 * 299.99774 * 20 18 16 24 24 C 1.40717 * 119.50908 * 359.76859 * 15 14 13 25 25 C 1.37616 * 119.74698 * 359.97438 * 24 15 14 26 26 C 1.51320 * 104.82608 * 344.65349 * 5 4 2 27 27 O 1.20834 * 125.09793 * 177.68170 * 26 5 4 28 28 O 1.34068 * 109.81188 * 357.68907 * 26 5 4 29 29 H 1.08992 * 109.47771 * 299.02941 * 1 2 3 30 30 H 1.08999 * 109.47347 * 59.03655 * 1 2 3 31 31 H 1.09007 * 109.47360 * 179.02941 * 1 2 3 32 32 H 1.08999 * 109.47250 * 180.96161 * 3 2 1 33 33 H 1.08994 * 109.47579 * 300.96700 * 3 2 1 34 34 H 1.09005 * 109.47112 * 60.96962 * 3 2 1 35 35 H 1.09004 * 110.87049 * 149.94420 * 4 2 1 36 36 H 1.08998 * 110.86758 * 26.27306 * 4 2 1 37 37 H 1.08994 * 109.47123 * 298.40088 * 6 5 4 38 38 H 1.09001 * 109.46716 * 58.39899 * 6 5 4 39 39 H 1.08994 * 109.47401 * 178.39870 * 6 5 4 40 40 H 0.97000 * 119.99583 * 3.13973 * 7 5 4 41 41 H 0.96999 * 120.00311 * 359.97438 * 10 8 7 42 42 H 1.09002 * 109.47448 * 59.99388 * 11 10 8 43 43 H 1.09002 * 109.46816 * 299.99766 * 11 10 8 44 44 H 1.07997 * 119.87915 * 359.97438 * 13 12 11 45 45 H 1.08003 * 120.12695 * 180.22757 * 14 13 12 46 46 H 0.97004 * 119.99330 * 180.02562 * 19 18 16 47 47 H 1.08003 * 120.12563 * 180.02562 * 24 15 14 48 48 H 1.08000 * 119.87757 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 6 2.0698 -0.7794 -1.2207 5 6 2.2301 -2.2062 -0.6505 6 6 3.5824 -2.7957 -1.0563 7 7 1.1396 -3.0668 -1.1159 8 6 1.0542 -4.3401 -0.6824 9 8 1.8824 -4.7747 0.0944 10 7 0.0507 -5.1316 -1.1102 11 6 -0.0425 -6.5155 -0.6387 12 6 -1.2441 -7.1785 -1.2611 13 6 -2.4703 -7.1249 -0.6165 14 6 -3.5755 -7.7226 -1.1781 15 6 -3.4552 -8.3987 -2.4063 16 6 -4.5827 -9.0203 -2.9906 17 1 -4.4502 -9.8399 -3.6812 18 6 -5.8706 -8.5735 -2.6738 19 7 -6.0394 -7.3935 -2.1348 20 14 -7.3485 -9.6622 -3.0207 21 1 -7.2143 -10.9341 -2.2661 22 1 -8.5882 -8.9636 -2.5960 23 1 -7.4177 -9.9543 -4.4749 24 6 -2.2044 -8.4512 -3.0489 25 6 -1.1140 -7.8418 -2.4715 26 6 2.1603 -2.0331 0.8512 27 8 2.2067 -2.9323 1.6571 28 8 2.0392 -0.7326 1.1536 29 1 -0.3634 0.4986 0.8985 30 1 -0.3634 0.5287 -0.8812 31 1 -0.3634 -1.0276 -0.0174 32 1 3.1527 1.4167 -0.0172 33 1 1.6940 1.9590 -0.8811 34 1 1.7222 1.9485 0.8986 35 1 3.0315 -0.3795 -1.5424 36 1 1.3497 -0.7668 -2.0388 37 1 3.6370 -2.8654 -2.1426 38 1 4.3832 -2.1517 -0.6928 39 1 3.6904 -3.7897 -0.6225 40 1 0.4790 -2.7201 -1.7358 41 1 -0.6103 -4.7848 -1.7296 42 1 -0.1450 -6.5236 0.4465 43 1 0.8596 -7.0575 -0.9224 44 1 -2.5594 -6.6092 0.3282 45 1 -4.5306 -7.6764 -0.6760 46 1 -6.9321 -7.0840 -1.9149 47 1 -2.1008 -8.9670 -3.9921 48 1 -0.1529 -7.8811 -2.9627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772418809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:02 Heat of formation + Delta-G solvation = -114.564434 kcal Electronic energy + Delta-G solvation = -30306.968862 eV Core-core repulsion = 26132.747012 eV Total energy + Delta-G solvation = -4174.221850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.71297 -40.75286 -39.47841 -38.85440 -36.84666 -36.08181 -35.06413 -34.38623 -32.71552 -31.50602 -31.13422 -28.55149 -28.32902 -28.02229 -25.49864 -24.97758 -22.91319 -22.67783 -22.45316 -21.79692 -20.50611 -19.39073 -19.23610 -18.28107 -17.82891 -17.25447 -17.08084 -16.68395 -16.28086 -15.96693 -15.84404 -15.58963 -15.42785 -15.20116 -14.94912 -14.63102 -14.34942 -14.19390 -13.90415 -13.82832 -13.65625 -13.50010 -13.42720 -13.25439 -13.07137 -13.00678 -12.81397 -12.72382 -12.71037 -12.54335 -12.47448 -12.11136 -12.08507 -11.55588 -11.49888 -11.44819 -11.29317 -11.08027 -10.94957 -10.24820 -9.80705 -9.40636 -9.29320 -8.67405 -6.37046 0.75052 0.92388 1.13404 1.38424 1.47218 1.50817 1.87424 2.08484 2.19512 2.21132 2.69838 2.84292 3.10824 3.36749 3.49259 3.71951 3.75449 3.91398 4.06408 4.17443 4.32080 4.51412 4.53135 4.59109 4.63068 4.66742 4.68588 4.75807 4.79565 4.80900 4.91463 4.92515 5.04346 5.14085 5.17018 5.19075 5.31402 5.34586 5.36997 5.42462 5.57675 5.67995 5.79450 5.87536 6.02165 6.08155 6.20814 6.35245 6.46673 6.67194 6.91186 6.99727 7.09822 7.63628 8.28833 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002143 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.097480 B =13062.497849 C =13829.794030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 C -0.139 4.139 4 C -0.134 4.134 5 C 0.141 3.859 6 C -0.152 4.152 7 N -0.719 5.719 8 C 0.689 3.311 9 O -0.605 6.605 10 N -0.728 5.728 11 C 0.215 3.785 12 C -0.225 4.225 13 C -0.083 4.083 14 C -0.192 4.192 15 C 0.087 3.913 16 C -0.496 4.496 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.818 5.818 20 Si 0.980 3.020 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.242 4.242 25 C -0.064 4.064 26 C 0.461 3.539 27 O -0.471 6.471 28 O -0.362 6.362 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.417 0.583 41 H 0.404 0.596 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.289 0.711 47 H 0.100 0.900 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.634 20.232 -3.832 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.057 3.943 3 C -0.196 4.196 4 C -0.172 4.172 5 C 0.051 3.949 6 C -0.210 4.210 7 N -0.381 5.381 8 C 0.389 3.611 9 O -0.483 6.483 10 N -0.384 5.384 11 C 0.092 3.908 12 C -0.227 4.227 13 C -0.102 4.102 14 C -0.211 4.211 15 C 0.084 3.916 16 C -0.525 4.525 17 H 0.096 0.904 18 C -0.179 4.179 19 N -0.444 5.444 20 Si 0.801 3.199 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.262 4.262 25 C -0.083 4.083 26 C 0.299 3.701 27 O -0.353 6.353 28 O -0.279 6.279 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.256 0.744 41 H 0.240 0.760 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.118 0.882 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.281 19.684 -2.437 23.328 hybrid contribution -1.521 -0.635 -0.132 1.654 sum 10.760 19.049 -2.569 22.028 Atomic orbital electron populations 1.22361 0.92356 1.02733 1.05286 1.23551 0.95123 0.94153 0.81430 1.21940 1.02559 0.90261 1.04850 1.23556 1.07136 0.88251 0.98207 1.21495 0.90227 0.93237 0.89898 1.22097 0.93248 1.01969 1.03716 1.44932 1.31539 1.09854 1.51760 1.16317 0.82283 0.81682 0.80829 1.90978 1.43448 1.74812 1.39103 1.45395 1.29390 1.12744 1.50827 1.19524 0.95212 0.79683 0.96403 1.19160 0.93973 1.10222 0.99338 1.20726 0.92752 0.98471 0.98231 1.21248 0.97620 1.05304 0.96961 1.17997 0.92969 0.89763 0.90849 1.19872 0.91315 1.16375 1.24898 0.90427 1.26756 1.03337 0.95485 0.92362 1.69859 1.26053 1.16931 1.31516 0.85276 0.75901 0.78795 0.79933 1.18744 1.19202 1.18171 1.21169 0.94156 1.09589 1.01248 1.20665 0.97287 0.96032 0.94316 1.24025 0.71951 0.81552 0.92539 1.90782 1.43939 1.42246 1.58358 1.87097 1.77046 1.20458 1.43334 0.91652 0.86393 0.93745 0.90638 0.86708 0.91677 0.84530 0.84473 0.88455 0.89722 0.93274 0.74418 0.76026 0.93839 0.92281 0.88383 0.88191 0.90017 0.88156 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.77 71.98 0.63 -1.28 16 2 C 0.09 1.11 1.24 -10.26 -0.01 1.09 16 3 C -0.14 -0.80 8.92 71.98 0.64 -0.16 16 4 C -0.13 -1.07 5.54 31.63 0.18 -0.89 16 5 C 0.14 2.78 0.96 3.56 0.00 2.79 16 6 C -0.15 -3.01 8.39 71.98 0.60 -2.41 16 7 N -0.72 -15.51 5.15 -438.19 -2.26 -17.76 16 8 C 0.69 22.16 7.98 179.06 1.43 23.59 16 9 O -0.60 -25.12 12.16 17.79 0.22 -24.90 16 10 N -0.73 -22.87 5.55 -482.31 -2.68 -25.55 16 11 C 0.22 7.88 5.79 85.63 0.50 8.38 16 12 C -0.23 -9.19 5.27 -19.68 -0.10 -9.29 16 13 C -0.08 -3.75 9.67 22.22 0.21 -3.54 16 14 C -0.19 -9.86 8.70 22.73 0.20 -9.66 16 15 C 0.09 4.54 5.58 -21.29 -0.12 4.43 16 16 C -0.50 -25.96 9.06 23.46 0.21 -25.75 16 17 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 18 C 0.04 1.78 5.14 85.26 0.44 2.22 16 19 N -0.82 -41.44 10.95 21.83 0.24 -41.20 16 20 Si 0.98 37.08 29.60 68.60 2.03 39.11 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 23 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 24 C -0.24 -11.35 9.80 22.73 0.22 -11.13 16 25 C -0.06 -2.66 9.67 22.22 0.21 -2.44 16 26 C 0.46 13.67 7.11 71.43 0.51 14.18 16 27 O -0.47 -19.59 15.50 29.04 0.45 -19.14 16 28 O -0.36 -8.65 10.48 -50.20 -0.53 -9.18 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.04 0.70 8.08 -2.38 -0.02 0.68 16 32 H 0.07 0.38 8.13 -2.39 -0.02 0.37 16 33 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.14 0.37 7.60 -2.38 -0.02 0.36 16 36 H 0.14 0.26 7.40 -2.39 -0.02 0.25 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.45 6.28 -2.39 -0.02 1.43 16 40 H 0.42 5.83 8.21 -92.71 -0.76 5.07 16 41 H 0.40 11.18 8.48 -92.71 -0.79 10.39 16 42 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 43 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 44 H 0.10 4.16 8.06 -2.91 -0.02 4.13 16 45 H 0.10 5.42 6.16 -2.91 -0.02 5.40 16 46 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 47 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 48 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -76.68 393.99 2.68 -74.00 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.55 Total: 34.50 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 5.75 Total: -9.88 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -4.69 Total: -84.51 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: 0.14 Total: -53.22 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -76.68 2.68 -74.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772418809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.565 kcal (2) G-P(sol) polarization free energy of solvation -76.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds