Wall clock time and date at job start Sat Apr 11 2020 07:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47224 * 2 1 4 4 C 1.50699 * 109.47085 * 179.97438 * 3 2 1 5 5 C 1.38120 * 120.04130 * 265.21083 * 4 3 2 6 6 C 1.38267 * 120.07888 * 180.27402 * 5 4 3 7 7 C 1.38316 * 120.15105 * 359.77324 * 6 5 4 8 8 C 1.38070 * 120.07726 * 359.97438 * 7 6 5 9 9 C 1.38906 * 120.03955 * 85.00075 * 4 3 2 10 10 N 1.39721 * 120.07573 * 359.97427 * 9 4 3 11 11 C 1.34779 * 120.00225 * 154.88484 * 10 9 4 12 12 O 1.21371 * 119.99900 * 354.47230 * 11 10 9 13 13 C 1.49352 * 120.00011 * 174.48006 * 11 10 9 14 14 O 1.21362 * 120.00290 * 359.97438 * 13 11 10 15 15 N 1.34779 * 120.00011 * 179.97438 * 13 11 10 16 16 C 1.47423 * 125.64483 * 359.68179 * 15 13 11 17 17 C 1.54917 * 104.83073 * 156.13868 * 16 15 13 18 18 C 1.55167 * 101.57826 * 37.01289 * 17 16 15 19 19 O 1.42895 * 110.71809 * 82.86066 * 18 17 16 20 20 C 1.50697 * 110.86694 * 206.06443 * 18 17 16 21 21 H 1.07997 * 120.00565 * 355.06125 * 20 18 17 22 22 C 1.37880 * 119.99458 * 175.06395 * 20 18 17 23 23 N 1.31513 * 120.00383 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 119.99999 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47183 * 90.00048 * 24 22 20 26 26 H 1.48498 * 109.47496 * 210.00096 * 24 22 20 27 27 H 1.48509 * 109.47188 * 330.00234 * 24 22 20 28 28 C 1.47023 * 125.64981 * 179.97438 * 15 13 11 29 29 H 1.09006 * 109.46643 * 59.99697 * 1 2 3 30 30 H 1.08990 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46834 * 300.00177 * 1 2 3 32 32 H 1.08998 * 109.46834 * 239.99823 * 2 1 3 33 33 H 1.09006 * 109.46643 * 120.00303 * 2 1 3 34 34 H 1.09002 * 109.46909 * 59.99961 * 3 2 1 35 35 H 1.08995 * 109.47517 * 300.00244 * 3 2 1 36 36 H 1.08000 * 119.95903 * 0.02562 * 5 4 3 37 37 H 1.08007 * 119.92770 * 179.74081 * 6 5 4 38 38 H 1.08003 * 119.95907 * 179.97438 * 7 6 5 39 39 H 1.07994 * 120.03976 * 180.02562 * 8 7 6 40 40 H 0.97002 * 120.00236 * 334.88256 * 10 9 4 41 41 H 1.09001 * 110.36998 * 274.97654 * 16 15 13 42 42 H 1.09005 * 110.36752 * 37.30633 * 16 15 13 43 43 H 1.08996 * 111.00651 * 278.93964 * 17 16 15 44 44 H 1.09000 * 111.00453 * 155.07885 * 17 16 15 45 45 H 0.96703 * 113.99604 * 185.02635 * 19 18 17 46 46 H 0.96994 * 120.00478 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.88014 * 300.21020 * 28 15 13 48 48 H 1.08998 * 109.88209 * 61.21929 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2380 1.5424 1.1924 6 6 5.6207 1.5481 1.1934 7 6 6.3167 1.4491 0.0022 8 6 5.6324 1.3436 -1.1923 9 6 4.2429 1.3374 -1.1970 10 7 3.5473 1.2311 -2.4040 11 6 4.1281 1.6276 -3.5538 12 8 5.2142 2.1689 -3.5298 13 6 3.4352 1.4011 -4.8573 14 8 2.3494 0.8595 -4.8813 15 7 4.0158 1.7980 -6.0070 16 6 5.3226 2.4706 -6.1220 17 6 5.8025 2.1611 -7.5621 18 6 4.4693 2.2191 -8.3538 19 8 4.1381 3.5683 -8.6882 20 6 4.5444 1.3673 -9.5947 21 1 5.4733 0.8871 -9.8648 22 6 3.4270 1.2010 -10.3853 23 7 2.2957 1.7853 -10.0562 24 14 3.5201 0.1457 -11.9239 25 1 3.1817 -1.2592 -11.5818 26 1 2.5569 0.6552 -12.9327 27 1 4.8959 0.2020 -12.4803 28 6 3.4480 1.6375 -7.3537 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.6976 1.6202 2.1242 37 1 6.1585 1.6306 2.1264 38 1 7.3967 1.4543 0.0066 39 1 6.1765 1.2660 -2.1220 40 1 2.6463 0.8720 -2.4146 41 1 5.2096 3.5457 -5.9827 42 1 6.0239 2.0642 -5.3931 43 1 6.2486 1.1684 -7.6205 44 1 6.4990 2.9222 -7.9139 45 1 3.2765 3.6674 -9.1160 46 1 1.5096 1.6680 -10.6122 47 1 3.2842 0.5805 -7.5633 48 1 2.5053 2.1799 -7.4256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592304356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:06 Heat of formation + Delta-G solvation = -110.057615 kcal Electronic energy + Delta-G solvation = -30687.953210 eV Core-core repulsion = 26513.926790 eV Total energy + Delta-G solvation = -4174.026420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.37200 -40.90912 -39.58159 -38.99189 -36.59079 -36.13366 -35.51886 -34.25795 -32.00984 -31.92693 -30.90169 -29.75629 -27.85630 -27.27835 -25.83612 -24.23921 -23.36507 -22.72243 -21.77050 -21.54471 -20.92537 -19.22876 -19.08545 -18.45003 -17.86577 -17.48371 -17.09765 -16.82687 -16.54949 -16.30189 -15.96269 -15.65401 -15.18987 -15.03852 -14.84893 -14.83685 -14.76314 -14.55895 -14.44163 -14.07880 -13.64236 -13.50579 -13.43494 -13.19432 -12.88664 -12.83560 -12.76996 -12.56652 -12.38748 -12.30893 -12.25124 -12.12012 -12.08997 -11.93699 -11.59817 -11.49825 -11.21528 -10.76510 -10.56475 -10.32796 -9.83518 -9.69870 -9.11375 -8.28567 -6.44184 -0.14869 0.43229 0.61720 1.08220 1.41589 1.44083 1.53484 1.95118 2.31304 2.39758 2.83834 2.97821 3.09054 3.73184 3.75014 3.85614 4.00364 4.09132 4.10759 4.19510 4.24211 4.30052 4.35966 4.47679 4.49074 4.55729 4.58737 4.70833 4.75662 4.85032 4.91930 4.97210 5.03418 5.06549 5.08352 5.17003 5.25276 5.26222 5.28334 5.36330 5.41808 5.43490 5.55276 5.62327 5.70795 5.90498 6.02793 6.05453 6.25947 6.47424 6.63502 6.73576 7.24994 7.33082 8.77841 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.002593 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.847537 B =10795.068545 C =11913.439199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.110 4.110 5 C -0.097 4.097 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.149 4.149 9 C 0.122 3.878 10 N -0.632 5.632 11 C 0.517 3.483 12 O -0.501 6.501 13 C 0.505 3.495 14 O -0.556 6.556 15 N -0.579 5.579 16 C 0.106 3.894 17 C -0.114 4.114 18 C 0.234 3.766 19 O -0.586 6.586 20 C -0.557 4.557 21 H 0.068 0.932 22 C 0.028 3.972 23 N -0.914 5.914 24 Si 0.964 3.036 25 H -0.278 1.278 26 H -0.282 1.282 27 H -0.267 1.267 28 C 0.118 3.882 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.127 0.873 40 H 0.424 0.576 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.376 0.624 46 H 0.271 0.729 47 H 0.048 0.952 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 -1.700 23.701 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.147 4.147 7 C -0.128 4.128 8 C -0.169 4.169 9 C 0.029 3.971 10 N -0.278 5.278 11 C 0.300 3.700 12 O -0.376 6.376 13 C 0.288 3.712 14 O -0.436 6.436 15 N -0.311 5.311 16 C -0.015 4.015 17 C -0.152 4.152 18 C 0.194 3.806 19 O -0.394 6.394 20 C -0.595 4.595 21 H 0.086 0.914 22 C -0.173 4.173 23 N -0.553 5.553 24 Si 0.789 3.211 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.191 1.191 28 C -0.005 4.005 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.160 0.840 39 H 0.145 0.855 40 H 0.264 0.736 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.226 0.774 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.122 -1.487 23.893 24.142 hybrid contribution -1.395 -0.777 -1.721 2.348 sum 1.727 -2.265 22.172 22.354 Atomic orbital electron populations 1.21794 0.94842 1.02214 1.02248 1.21521 0.96452 0.95389 1.02229 1.20659 0.89467 0.98066 1.03813 1.19872 0.96590 1.03184 0.91579 1.21209 0.94461 0.98643 0.97174 1.21520 0.94411 1.00049 0.98757 1.21310 1.01056 0.98840 0.91550 1.21442 0.92526 1.02528 1.00372 1.17897 0.91839 1.03052 0.84338 1.43128 1.19623 1.60643 1.04395 1.19934 0.85837 0.79233 0.85037 1.90671 1.20401 1.39827 1.86663 1.19918 0.85689 0.80809 0.84820 1.90722 1.21510 1.44264 1.87154 1.48722 1.21671 1.54747 1.06001 1.22697 0.83054 0.97320 0.98442 1.22825 0.96957 1.02820 0.92579 1.19710 0.89750 0.80390 0.90744 1.86124 1.42140 1.29100 1.82066 1.21785 0.97487 1.31150 1.09040 0.91380 1.25793 0.94752 0.96143 1.00656 1.69780 1.01459 1.44151 1.39919 0.85462 0.78224 0.78557 0.78845 1.20336 1.20713 1.19125 1.22808 0.98105 1.00261 0.79284 0.93325 0.92257 0.91323 0.93526 0.90516 0.88299 0.92240 0.82736 0.82952 0.83962 0.85511 0.73619 0.91139 0.87603 0.89511 0.88985 0.77420 0.91944 0.93320 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.12 -1.77 5.83 30.59 0.18 -1.60 16 3 C -0.08 -1.31 4.72 29.85 0.14 -1.16 16 4 C -0.11 -2.10 5.15 -19.73 -0.10 -2.20 16 5 C -0.10 -1.43 9.68 22.25 0.22 -1.21 16 6 C -0.13 -1.89 10.04 22.30 0.22 -1.66 16 7 C -0.11 -2.04 10.04 22.25 0.22 -1.82 16 8 C -0.15 -3.71 8.72 22.40 0.20 -3.52 16 9 C 0.12 3.03 6.41 38.22 0.24 3.28 16 10 N -0.63 -17.52 4.97 -304.84 -1.52 -19.04 16 11 C 0.52 17.26 7.66 87.24 0.67 17.93 16 12 O -0.50 -17.10 10.94 -3.31 -0.04 -17.14 16 13 C 0.50 20.09 7.91 87.24 0.69 20.78 16 14 O -0.56 -24.33 16.81 -3.28 -0.06 -24.39 16 15 N -0.58 -24.36 3.33 -813.47 -2.71 -27.07 16 16 C 0.11 3.95 6.05 86.86 0.53 4.48 16 17 C -0.11 -4.52 6.23 31.99 0.20 -4.32 16 18 C 0.23 11.31 0.85 -10.35 -0.01 11.31 16 19 O -0.59 -29.51 13.08 -148.98 -1.95 -31.46 16 20 C -0.56 -28.81 8.13 25.60 0.21 -28.60 16 21 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 22 C 0.03 1.43 5.28 84.66 0.45 1.88 16 23 N -0.91 -48.59 10.96 21.45 0.24 -48.36 16 24 Si 0.96 41.44 29.54 68.60 2.03 43.46 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 C 0.12 5.73 5.23 86.73 0.45 6.19 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.84 7.44 -2.39 -0.02 0.82 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 1.15 8.05 -2.39 -0.02 1.13 16 35 H 0.06 1.09 7.27 -2.39 -0.02 1.08 16 36 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.13 3.61 5.79 -2.91 -0.02 3.59 16 40 H 0.42 11.01 6.24 -92.71 -0.58 10.43 16 41 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.11 3.56 6.15 -2.38 -0.01 3.55 16 43 H 0.09 3.26 8.04 -2.39 -0.02 3.24 16 44 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.38 19.54 7.45 -74.05 -0.55 18.99 16 46 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.05 2.57 7.81 -2.39 -0.02 2.55 16 48 H 0.05 2.46 7.92 -2.39 -0.02 2.44 16 Total: -1.00 -61.45 390.07 1.09 -60.37 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -0.13 Total: 45.28 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 5.22 Total: 18.34 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -3.99 Total: -94.46 kcal Atomic # 8 Polarization: -70.95 SS G_CDS: -2.04 Total: -72.99 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -61.45 1.09 -60.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.692 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds