Wall clock time and date at job start Sat Apr 11 2020 07:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46893 * 2 1 4 4 C 1.50699 * 109.46723 * 180.02562 * 3 2 1 5 5 C 1.38122 * 120.03697 * 265.25663 * 4 3 2 6 6 C 1.38271 * 120.07490 * 180.27822 * 5 4 3 7 7 C 1.38311 * 120.15306 * 359.74174 * 6 5 4 8 8 C 1.38073 * 120.07578 * 359.97438 * 7 6 5 9 9 C 1.38898 * 120.04225 * 85.00184 * 4 3 2 10 10 N 1.39727 * 120.07625 * 0.02562 * 9 4 3 11 11 C 1.34777 * 120.00514 * 154.87873 * 10 9 4 12 12 O 1.21381 * 119.99452 * 354.48049 * 11 10 9 13 13 C 1.49344 * 120.00215 * 174.47334 * 11 10 9 14 14 O 1.21355 * 120.00005 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00215 * 179.97438 * 13 11 10 16 16 C 1.47433 * 125.64416 * 359.96046 * 15 13 11 17 17 C 1.54912 * 104.82742 * 204.16313 * 16 15 13 18 18 C 1.55151 * 101.58490 * 322.99198 * 17 16 15 19 19 O 1.42903 * 110.72143 * 277.14121 * 18 17 16 20 20 C 1.50703 * 110.87060 * 153.93989 * 18 17 16 21 21 H 1.07997 * 120.00196 * 2.54626 * 20 18 17 22 22 C 1.37879 * 119.99513 * 182.54753 * 20 18 17 23 23 N 1.31511 * 120.00541 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 119.99784 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47237 * 89.99821 * 24 22 20 26 26 H 1.48496 * 109.47181 * 210.00166 * 24 22 20 27 27 H 1.48504 * 109.47310 * 329.99940 * 24 22 20 28 28 C 1.47018 * 125.65127 * 180.02562 * 15 13 11 29 29 H 1.08997 * 109.46840 * 60.00022 * 1 2 3 30 30 H 1.09002 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46696 * 299.99858 * 1 2 3 32 32 H 1.08995 * 109.46696 * 240.00142 * 2 1 3 33 33 H 1.08997 * 109.46840 * 119.99977 * 2 1 3 34 34 H 1.08996 * 109.46942 * 59.99862 * 3 2 1 35 35 H 1.09001 * 109.47370 * 300.00181 * 3 2 1 36 36 H 1.07998 * 119.96142 * 0.04158 * 5 4 3 37 37 H 1.08005 * 119.92259 * 179.76112 * 6 5 4 38 38 H 1.07998 * 119.96108 * 180.02562 * 7 6 5 39 39 H 1.08003 * 120.03485 * 180.02562 * 8 7 6 40 40 H 0.97000 * 119.99424 * 334.87693 * 10 9 4 41 41 H 1.08990 * 110.36780 * 323.00100 * 16 15 13 42 42 H 1.08998 * 110.36476 * 85.33141 * 16 15 13 43 43 H 1.09004 * 110.99849 * 204.91915 * 17 16 15 44 44 H 1.08996 * 111.00518 * 81.07364 * 17 16 15 45 45 H 0.96697 * 114.00420 * 174.97983 * 19 18 17 46 46 H 0.96997 * 120.00480 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.88177 * 59.48928 * 28 15 13 48 48 H 1.09002 * 109.88269 * 298.32106 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.5412 1.1907 6 6 5.6216 1.5470 1.1906 7 6 6.3167 1.4487 -0.0012 8 6 5.6314 1.3439 -1.1952 9 6 4.2419 1.3379 -1.1988 10 7 3.5453 1.2331 -2.4054 11 6 4.1254 1.6301 -3.5553 12 8 5.2120 2.1705 -3.5317 13 6 3.4315 1.4049 -4.8585 14 8 2.3450 0.8649 -4.8820 15 7 4.0115 1.8024 -6.0083 16 6 5.3213 2.4691 -6.1242 17 6 5.2530 3.2474 -7.4619 18 6 4.4418 2.2682 -8.3510 19 8 5.2947 1.2654 -8.9070 20 6 3.7138 3.0109 -9.4416 21 1 3.8366 4.0792 -9.5423 22 6 2.8911 2.3265 -10.3110 23 7 2.7420 1.0256 -10.1887 24 14 1.9881 3.2471 -11.6624 25 1 2.8317 3.2859 -12.8839 26 1 0.7103 2.5538 -11.9652 27 1 1.7044 4.6337 -11.2126 28 6 3.4422 1.6442 -7.3545 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 3.6993 1.6177 2.1231 37 1 6.1601 1.6281 2.1233 38 1 7.3966 1.4532 0.0024 39 1 6.1748 1.2668 -2.1254 40 1 2.6440 0.8745 -2.4155 41 1 5.4718 3.1571 -5.2924 42 1 6.1217 1.7299 -6.1559 43 1 6.2504 3.4108 -7.8701 44 1 4.7239 4.1922 -7.3377 45 1 4.8259 0.5842 -9.4082 46 1 2.1629 0.5442 -10.8001 47 1 2.4853 2.1625 -7.4156 48 1 3.3079 0.5858 -7.5782 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592304357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:10 Heat of formation + Delta-G solvation = -109.904848 kcal Electronic energy + Delta-G solvation = -30679.580659 eV Core-core repulsion = 26505.560864 eV Total energy + Delta-G solvation = -4174.019795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.37240 -40.91177 -39.58123 -38.99309 -36.59283 -36.13591 -35.51973 -34.23124 -32.01056 -31.93081 -30.90430 -29.77171 -27.85608 -27.27708 -25.83685 -24.23867 -23.36843 -22.72433 -21.77040 -21.54015 -20.91957 -19.23278 -19.10126 -18.44248 -17.82919 -17.49992 -17.16681 -16.78685 -16.61872 -16.22419 -15.93064 -15.68988 -15.19457 -15.02736 -14.85565 -14.84691 -14.74431 -14.56635 -14.47504 -14.05275 -13.60114 -13.51603 -13.45363 -13.19125 -12.88250 -12.83506 -12.77806 -12.56998 -12.38302 -12.29870 -12.23315 -12.10780 -12.09054 -11.95857 -11.60527 -11.50828 -11.24207 -10.75701 -10.55405 -10.32806 -9.84414 -9.69671 -9.11397 -8.28824 -6.44159 -0.15021 0.42999 0.61642 1.08011 1.42065 1.44153 1.53326 1.94936 2.31122 2.39711 2.83687 2.97432 3.08989 3.73231 3.75368 3.85694 4.00989 4.09159 4.10714 4.19580 4.24319 4.30006 4.35695 4.47616 4.48739 4.55818 4.58170 4.70662 4.75834 4.85190 4.90733 4.97400 5.03097 5.06264 5.08311 5.17072 5.25157 5.26345 5.28032 5.36303 5.41165 5.43639 5.55224 5.62222 5.71245 5.90332 6.02513 6.05302 6.25626 6.47313 6.63191 6.73396 7.26097 7.34332 8.77811 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.002598 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.694160 B =10773.029645 C =11978.783631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.109 4.109 5 C -0.096 4.096 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.149 4.149 9 C 0.123 3.877 10 N -0.632 5.632 11 C 0.517 3.483 12 O -0.501 6.501 13 C 0.505 3.495 14 O -0.556 6.556 15 N -0.579 5.579 16 C 0.106 3.894 17 C -0.114 4.114 18 C 0.235 3.765 19 O -0.587 6.587 20 C -0.556 4.556 21 H 0.068 0.932 22 C 0.028 3.972 23 N -0.915 5.915 24 Si 0.964 3.036 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.268 1.268 28 C 0.115 3.885 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.126 0.874 40 H 0.425 0.575 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.378 0.622 46 H 0.272 0.728 47 H 0.050 0.950 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 0.190 23.997 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.147 4.147 7 C -0.128 4.128 8 C -0.169 4.169 9 C 0.029 3.971 10 N -0.278 5.278 11 C 0.299 3.701 12 O -0.376 6.376 13 C 0.288 3.712 14 O -0.436 6.436 15 N -0.311 5.311 16 C -0.015 4.015 17 C -0.152 4.152 18 C 0.194 3.806 19 O -0.395 6.395 20 C -0.594 4.594 21 H 0.086 0.914 22 C -0.173 4.173 23 N -0.554 5.554 24 Si 0.790 3.210 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.192 1.192 28 C -0.007 4.007 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.144 0.856 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.228 0.772 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.983 0.460 24.195 24.280 hybrid contribution -1.500 -0.496 -1.714 2.331 sum 0.483 -0.036 22.481 22.486 Atomic orbital electron populations 1.21794 0.94823 1.02206 1.02267 1.21523 0.96469 0.95420 1.02206 1.20661 0.89424 0.98040 1.03861 1.19871 0.96614 1.03152 0.91541 1.21213 0.94432 0.98618 0.97198 1.21518 0.94436 1.00041 0.98719 1.21303 1.01033 0.98866 0.91564 1.21436 0.92568 1.02564 1.00342 1.17889 0.91789 1.03049 0.84365 1.43126 1.19612 1.60627 1.04420 1.19936 0.85840 0.79256 0.85025 1.90674 1.20350 1.39782 1.86761 1.19910 0.85732 0.80765 0.84802 1.90719 1.21535 1.44211 1.87160 1.48711 1.21338 1.55085 1.05966 1.22696 0.83058 0.96506 0.99237 1.22823 1.01691 0.97669 0.93027 1.19707 0.86134 0.85386 0.89346 1.86110 1.39143 1.41356 1.72938 1.21796 1.27712 0.95260 1.14671 0.91368 1.25794 0.96302 0.95819 0.99426 1.69728 1.39027 1.07947 1.38721 0.85453 0.77706 0.78793 0.79093 1.19937 1.20966 1.19229 1.22844 0.98330 1.00026 0.79484 0.93290 0.92290 0.91307 0.93563 0.90542 0.88259 0.92174 0.82699 0.82946 0.84023 0.85634 0.73607 0.87690 0.91032 0.88987 0.89576 0.77249 0.91899 0.93174 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.99 0.71 -1.38 16 2 C -0.12 -1.77 5.83 30.60 0.18 -1.59 16 3 C -0.08 -1.28 4.72 29.85 0.14 -1.14 16 4 C -0.11 -2.08 5.15 -19.73 -0.10 -2.18 16 5 C -0.10 -1.41 9.68 22.25 0.22 -1.20 16 6 C -0.13 -1.88 10.04 22.29 0.22 -1.66 16 7 C -0.11 -2.06 10.04 22.25 0.22 -1.84 16 8 C -0.15 -3.75 8.72 22.40 0.20 -3.56 16 9 C 0.12 3.04 6.41 38.21 0.24 3.28 16 10 N -0.63 -17.47 4.97 -304.85 -1.52 -18.99 16 11 C 0.52 17.22 7.66 87.24 0.67 17.89 16 12 O -0.50 -17.10 10.94 -3.34 -0.04 -17.14 16 13 C 0.50 20.04 7.91 87.24 0.69 20.73 16 14 O -0.56 -24.21 16.81 -3.26 -0.05 -24.27 16 15 N -0.58 -24.29 3.33 -813.49 -2.71 -27.00 16 16 C 0.11 3.96 6.05 86.85 0.53 4.48 16 17 C -0.11 -4.54 6.23 31.99 0.20 -4.34 16 18 C 0.23 11.34 0.85 -10.35 -0.01 11.33 16 19 O -0.59 -29.69 13.07 -148.98 -1.95 -31.64 16 20 C -0.56 -28.82 8.12 25.60 0.21 -28.61 16 21 H 0.07 3.45 7.78 -2.91 -0.02 3.42 16 22 C 0.03 1.43 5.28 84.66 0.45 1.87 16 23 N -0.92 -48.64 10.98 21.45 0.24 -48.40 16 24 Si 0.96 41.42 29.54 68.60 2.03 43.45 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 C 0.12 5.61 5.37 86.73 0.47 6.08 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.83 7.44 -2.39 -0.02 0.81 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.13 8.05 -2.39 -0.02 1.11 16 35 H 0.06 1.09 7.26 -2.39 -0.02 1.07 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.13 3.64 5.79 -2.91 -0.02 3.62 16 40 H 0.42 10.96 6.24 -92.71 -0.58 10.38 16 41 H 0.11 3.56 6.16 -2.39 -0.01 3.55 16 42 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.09 3.41 8.14 -2.39 -0.02 3.40 16 44 H 0.09 3.25 8.04 -2.39 -0.02 3.23 16 45 H 0.38 19.76 7.26 -74.06 -0.54 19.22 16 46 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.05 2.63 7.82 -2.39 -0.02 2.61 16 48 H 0.05 2.41 7.98 -2.39 -0.02 2.39 16 Total: -1.00 -61.39 390.07 1.11 -60.27 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: -0.12 Total: 45.54 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 5.23 Total: 18.17 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -3.99 Total: -94.39 kcal Atomic # 8 Polarization: -71.01 SS G_CDS: -2.04 Total: -73.05 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -61.39 1.11 -60.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.631 kcal (2) G-P(sol) polarization free energy of solvation -61.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds