Wall clock time and date at job start Sat Apr 11 2020 07:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47091 * 2 1 4 4 C 1.50699 * 109.47287 * 119.99772 * 2 1 3 5 5 C 1.38315 * 119.96342 * 300.02629 * 4 2 1 6 6 C 1.38269 * 120.14981 * 180.02562 * 5 4 2 7 7 C 1.38116 * 120.07922 * 359.67722 * 6 5 4 8 8 C 1.38915 * 119.91958 * 0.57119 * 7 6 5 9 9 N 1.39727 * 120.07266 * 179.72286 * 8 7 6 10 10 C 1.34770 * 120.00360 * 326.50701 * 9 8 7 11 11 O 1.21378 * 119.99901 * 354.72813 * 10 9 8 12 12 C 1.49351 * 120.00312 * 174.72711 * 10 9 8 13 13 O 1.21362 * 120.00039 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00372 * 179.97438 * 12 10 9 15 15 C 1.47421 * 125.64496 * 359.95910 * 14 12 10 16 16 C 1.54910 * 104.82970 * 204.16532 * 15 14 12 17 17 C 1.55152 * 101.58214 * 322.98715 * 16 15 14 18 18 O 1.42896 * 110.72267 * 277.14007 * 17 16 15 19 19 C 1.50706 * 110.87334 * 153.93608 * 17 16 15 20 20 H 1.07997 * 119.99267 * 2.55383 * 19 17 16 21 21 C 1.37874 * 120.00112 * 182.54859 * 19 17 16 22 22 N 1.31516 * 119.99940 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99891 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47200 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46927 * 120.00161 * 23 21 19 26 26 H 1.48501 * 109.47111 * 239.99899 * 23 21 19 27 27 C 1.47016 * 125.64909 * 179.97438 * 14 12 10 28 28 C 1.38077 * 119.96020 * 119.99795 * 4 2 1 29 29 H 1.08996 * 109.47288 * 59.99854 * 1 2 3 30 30 H 1.08997 * 109.47368 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47018 * 300.00033 * 1 2 3 32 32 H 1.08995 * 109.46598 * 240.00288 * 2 1 3 33 33 H 1.08994 * 109.47144 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46970 * 300.00529 * 3 2 1 35 35 H 1.08995 * 109.47091 * 60.00083 * 3 2 1 36 36 H 1.07998 * 119.92366 * 359.97438 * 5 4 2 37 37 H 1.08004 * 119.95986 * 179.97438 * 6 5 4 38 38 H 1.08001 * 120.03995 * 180.32509 * 7 6 5 39 39 H 0.96999 * 119.99605 * 146.50190 * 9 8 7 40 40 H 1.08999 * 110.36970 * 322.99771 * 15 14 12 41 41 H 1.09004 * 110.36939 * 85.32645 * 15 14 12 42 42 H 1.09009 * 111.00123 * 204.91602 * 16 15 14 43 43 H 1.08992 * 111.00867 * 81.06681 * 16 15 14 44 44 H 0.96705 * 114.00187 * 174.97147 * 18 17 16 45 45 H 0.96998 * 120.00047 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.88206 * 59.49251 * 27 14 12 47 47 H 1.08999 * 109.88600 * 298.31961 * 27 14 12 48 48 H 1.08008 * 120.03626 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6973 -0.2374 2.4863 6 6 2.1566 -0.8859 3.6179 7 6 2.9464 -2.0125 3.4976 8 6 3.2890 -2.4872 2.2378 9 7 4.0926 -3.6234 2.1124 10 6 5.0529 -3.8736 3.0243 11 8 5.2840 -3.0652 3.8997 12 6 5.8326 -5.1457 2.9578 13 8 5.6012 -5.9543 2.0829 14 7 6.7933 -5.3958 3.8695 15 6 7.1771 -4.5049 4.9796 16 6 8.6373 -4.8972 5.3162 17 6 8.6023 -6.4346 5.1100 18 8 8.0932 -7.0894 6.2736 19 6 9.9705 -6.9608 4.7601 20 1 10.8149 -6.2884 4.7255 21 6 10.1441 -8.3004 4.4843 22 7 9.1158 -9.1193 4.5271 23 14 11.8401 -8.9527 4.0514 24 1 12.8199 -7.8371 4.0732 25 1 12.2419 -9.9833 5.0423 26 1 11.8069 -9.5565 2.6951 27 6 7.6322 -6.6019 3.9214 28 6 2.8261 -1.8329 1.1029 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.0763 0.6408 2.5833 37 1 1.8934 -0.5137 4.5970 38 1 3.3004 -2.5216 4.3819 39 1 3.9593 -4.2320 1.3690 40 1 7.1275 -3.4627 4.6642 41 1 6.5309 -4.6725 5.8413 42 1 8.8810 -4.6470 6.3489 43 1 9.3374 -4.4263 4.6263 44 1 7.9785 -8.0439 6.1693 45 1 9.2379 -10.0617 4.3328 46 1 8.1963 -6.7013 2.9940 47 1 7.0073 -7.4819 4.0738 48 1 3.0873 -2.2017 0.1219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592304463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:17 Heat of formation + Delta-G solvation = -93.442528 kcal Electronic energy + Delta-G solvation = -30111.143754 eV Core-core repulsion = 25937.837819 eV Total energy + Delta-G solvation = -4173.305936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.00111 -39.67554 -38.47845 -37.32335 -36.07289 -34.64649 -34.05778 -32.25448 -30.61322 -30.23851 -29.41249 -27.98773 -27.46777 -26.04709 -24.45788 -23.43449 -22.72603 -22.01582 -20.27391 -19.70319 -19.52066 -17.67359 -17.24257 -17.10991 -16.60705 -16.04506 -15.91403 -15.60604 -15.13231 -14.85982 -14.55071 -14.36081 -14.26114 -13.87196 -13.80912 -13.74594 -13.11027 -13.02209 -12.95673 -12.76568 -12.54937 -12.41775 -12.22509 -11.89664 -11.80875 -11.57790 -11.51805 -11.27867 -11.11405 -11.03039 -10.98631 -10.82740 -10.64802 -10.49558 -10.43410 -10.21223 -9.41899 -9.24195 -8.93819 -8.71439 -8.38543 -8.29296 -8.09559 -6.34336 -4.42457 0.98054 1.21458 1.75519 2.45009 3.17357 3.26406 3.30061 3.37339 3.66471 3.73098 4.23195 4.34870 4.50530 4.50999 4.80378 4.86804 4.93946 5.00666 5.06416 5.18646 5.29097 5.30065 5.36878 5.44111 5.49421 5.56696 5.62906 5.77135 5.81803 5.83990 5.88677 5.90841 5.98229 6.10150 6.15944 6.23419 6.37962 6.43385 6.45327 6.68460 6.72949 6.76984 6.84981 7.04960 7.13924 7.26949 7.67855 7.71595 7.89477 7.97011 8.28646 8.61615 9.25190 9.34851 10.73819 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.002075 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.865929 B =13488.689372 C =13834.193420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.059 4.059 5 C -0.132 4.132 6 C -0.097 4.097 7 C -0.125 4.125 8 C 0.153 3.847 9 N -0.652 5.652 10 C 0.512 3.488 11 O -0.495 6.495 12 C 0.508 3.492 13 O -0.535 6.535 14 N -0.572 5.572 15 C 0.097 3.903 16 C -0.120 4.120 17 C 0.248 3.752 18 O -0.583 6.583 19 C -0.535 4.535 20 H 0.069 0.931 21 C 0.070 3.930 22 N -0.896 5.896 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.098 3.902 28 C -0.142 4.142 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.422 0.578 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.384 0.616 45 H 0.270 0.730 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.471 16.679 -6.673 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.060 4.060 5 C -0.150 4.150 6 C -0.115 4.115 7 C -0.145 4.145 8 C 0.059 3.941 9 N -0.298 5.298 10 C 0.295 3.705 11 O -0.368 6.368 12 C 0.289 3.711 13 O -0.414 6.414 14 N -0.304 5.304 15 C -0.025 4.025 16 C -0.158 4.158 17 C 0.207 3.793 18 O -0.392 6.392 19 C -0.574 4.574 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.535 5.535 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.022 4.022 28 C -0.162 4.162 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.153 0.847 39 H 0.260 0.740 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.234 0.766 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.447 17.181 -6.301 23.948 hybrid contribution 0.795 -1.457 -0.875 1.876 sum -14.653 15.724 -7.176 22.659 Atomic orbital electron populations 1.21857 0.94220 1.02106 1.01915 1.20128 0.95997 0.96100 0.95271 1.21857 1.01413 0.94976 1.01902 1.19598 0.96832 0.94680 0.94856 1.20934 1.01586 1.00700 0.91814 1.21008 0.96818 0.94986 0.98717 1.21191 0.98545 0.98091 0.96652 1.17727 0.93506 0.88624 0.94281 1.43228 1.32817 1.24594 1.29206 1.20610 0.80382 0.87693 0.81820 1.90725 1.64970 1.47026 1.34074 1.19328 0.81889 0.86633 0.83203 1.90746 1.67337 1.47915 1.35399 1.48711 1.32607 1.22350 1.26710 1.22682 0.96871 0.94257 0.88716 1.22821 0.93944 0.97129 1.01945 1.19526 0.90387 0.88014 0.81344 1.86120 1.87629 1.26517 1.38948 1.21547 0.93814 0.93969 1.48039 0.91308 1.25086 0.97693 0.96837 0.93723 1.69645 1.30077 1.04948 1.48808 0.86322 0.83424 0.78935 0.78089 1.19540 1.20706 1.20760 1.23314 0.92140 0.84259 1.02536 1.20795 1.01720 0.96455 0.97245 0.92399 0.92457 0.92387 0.90418 0.92420 0.92397 0.92372 0.86111 0.85643 0.84727 0.74014 0.89481 0.91195 0.90200 0.90423 0.76551 0.91959 0.90787 0.90980 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.01 37.16 0.33 -0.54 16 2 C -0.06 -0.40 3.09 -91.77 -0.28 -0.68 16 3 C -0.14 -0.93 9.01 37.16 0.33 -0.59 16 4 C -0.06 -0.54 4.78 -104.65 -0.50 -1.04 16 5 C -0.13 -1.20 8.71 -39.54 -0.34 -1.54 16 6 C -0.10 -0.99 10.04 -39.61 -0.40 -1.39 16 7 C -0.12 -1.57 8.65 -39.38 -0.34 -1.91 16 8 C 0.15 1.91 6.27 -83.75 -0.53 1.39 16 9 N -0.65 -8.77 5.32 -10.30 -0.05 -8.83 16 10 C 0.51 8.41 7.59 -11.63 -0.09 8.32 16 11 O -0.49 -8.55 11.47 5.47 0.06 -8.49 16 12 C 0.51 9.84 7.91 -11.63 -0.09 9.75 16 13 O -0.53 -11.30 16.81 5.49 0.09 -11.21 16 14 N -0.57 -11.78 3.33 -171.07 -0.57 -12.35 16 15 C 0.10 1.82 6.05 -2.53 -0.02 1.81 16 16 C -0.12 -2.43 6.23 -24.58 -0.15 -2.58 16 17 C 0.25 5.90 0.85 -89.93 -0.08 5.83 16 18 O -0.58 -14.47 13.07 -35.23 -0.46 -14.93 16 19 C -0.54 -13.74 8.12 -34.44 -0.28 -14.02 16 20 H 0.07 1.74 7.78 -52.49 -0.41 1.34 16 21 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 22 N -0.90 -23.31 10.98 55.43 0.61 -22.70 16 23 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 C 0.10 2.31 5.37 -3.06 -0.02 2.29 16 28 C -0.14 -1.48 9.59 -39.38 -0.38 -1.85 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 7.38 -51.92 -0.38 -0.05 16 32 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.36 7.38 -51.93 -0.38 -0.03 16 36 H 0.12 0.85 7.09 -52.49 -0.37 0.48 16 37 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.87 6.43 -52.49 -0.34 1.53 16 39 H 0.42 5.03 8.30 -40.82 -0.34 4.69 16 40 H 0.09 1.53 6.16 -51.93 -0.32 1.21 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 43 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 44 H 0.38 9.71 7.26 45.56 0.33 10.04 16 45 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 46 H 0.07 1.86 7.81 -51.93 -0.41 1.45 16 47 H 0.07 1.82 7.98 -51.93 -0.41 1.41 16 48 H 0.13 1.10 7.94 -52.48 -0.42 0.68 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -28.49 391.04 -8.73 -37.23 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -6.37 Total: 15.33 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.92 Total: 4.93 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.02 Total: -43.88 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.31 Total: -34.62 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.49 -8.73 -37.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.216 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds