Wall clock time and date at job start Sat Apr 11 2020 07:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47012 * 2 1 4 4 C 1.50699 * 109.47027 * 120.00226 * 2 1 3 5 5 C 1.38119 * 120.03664 * 305.20203 * 4 2 1 6 6 C 1.38269 * 120.07803 * 180.27525 * 5 4 2 7 7 C 1.38317 * 120.14984 * 359.74767 * 6 5 4 8 8 C 1.38070 * 120.07599 * 359.97438 * 7 6 5 9 9 C 1.38905 * 120.04238 * 124.95048 * 4 2 1 10 10 N 1.39718 * 120.07458 * 359.97438 * 9 4 2 11 11 C 1.34776 * 120.00287 * 154.81501 * 10 9 4 12 12 O 1.21379 * 119.99644 * 354.49788 * 11 10 9 13 13 C 1.49350 * 120.00283 * 174.49620 * 11 10 9 14 14 O 1.21355 * 120.00094 * 0.02562 * 13 11 10 15 15 N 1.34780 * 120.00100 * 180.02562 * 13 11 10 16 16 C 1.47434 * 125.64734 * 359.95332 * 15 13 11 17 17 C 1.54905 * 104.83185 * 204.16832 * 16 15 13 18 18 C 1.55162 * 101.58359 * 322.99372 * 17 16 15 19 19 O 1.42901 * 110.71868 * 277.14079 * 18 17 16 20 20 C 1.50701 * 110.87361 * 153.93856 * 18 17 16 21 21 H 1.07999 * 119.99810 * 2.54279 * 20 18 17 22 22 C 1.37876 * 119.99684 * 182.54554 * 20 18 17 23 23 N 1.31508 * 120.00298 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 119.99591 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47043 * 60.00110 * 24 22 20 26 26 H 1.48498 * 109.47138 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47364 * 299.99943 * 24 22 20 28 28 C 1.47014 * 125.64933 * 180.02562 * 15 13 11 29 29 H 1.08997 * 109.47189 * 300.00050 * 1 2 3 30 30 H 1.09006 * 109.47114 * 60.00323 * 1 2 3 31 31 H 1.09002 * 109.47631 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46854 * 239.99897 * 2 1 3 33 33 H 1.09004 * 109.46972 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47360 * 299.99940 * 3 2 1 35 35 H 1.08997 * 109.47184 * 59.99947 * 3 2 1 36 36 H 1.08005 * 119.96490 * 359.97438 * 5 4 2 37 37 H 1.07998 * 119.93083 * 179.76356 * 6 5 4 38 38 H 1.07998 * 119.96109 * 179.97438 * 7 6 5 39 39 H 1.08001 * 120.03965 * 180.02562 * 8 7 6 40 40 H 0.97005 * 120.00380 * 334.82147 * 10 9 4 41 41 H 1.08997 * 110.36671 * 323.00762 * 16 15 13 42 42 H 1.09002 * 110.36097 * 85.32588 * 16 15 13 43 43 H 1.08995 * 111.00262 * 204.91998 * 17 16 15 44 44 H 1.09001 * 111.00561 * 81.06522 * 17 16 15 45 45 H 0.96697 * 114.00296 * 174.97724 * 19 18 17 46 46 H 0.97001 * 120.00151 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.89038 * 59.48436 * 28 15 13 48 48 H 1.09006 * 109.88205 * 298.31791 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6129 -0.3052 2.4824 6 6 2.0776 -0.9527 3.6122 7 6 2.9597 -2.0115 3.4928 8 6 3.3786 -2.4256 2.2440 9 6 2.9135 -1.7770 1.1066 10 7 3.3354 -2.1934 -0.1586 11 6 4.5123 -2.8348 -0.2994 12 8 5.2516 -2.9627 0.6548 13 6 4.9069 -3.3883 -1.6292 14 8 4.1680 -3.2600 -2.5833 15 7 6.0837 -4.0302 -1.7698 16 6 7.0728 -4.2553 -0.6999 17 6 8.4221 -4.4362 -1.4389 18 6 7.9820 -5.2195 -2.7039 19 8 7.8784 -6.6167 -2.4228 20 6 8.9359 -4.9764 -3.8450 21 1 9.8098 -4.3595 -3.6961 22 6 8.6930 -5.5416 -5.0789 23 7 7.6286 -6.2924 -5.2602 24 14 9.8751 -5.2398 -6.4934 25 1 11.2236 -5.7429 -6.1275 26 1 9.3918 -5.9526 -7.7031 27 1 9.9495 -3.7835 -6.7742 28 6 6.5943 -4.6205 -3.0157 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 0.9249 0.5217 2.5794 37 1 1.7511 -0.6314 4.5902 38 1 3.3210 -2.5148 4.3773 39 1 4.0670 -3.2526 2.1514 40 1 2.7813 -2.0208 -0.9359 41 1 7.1166 -3.3920 -0.0360 42 1 6.8246 -5.1554 -0.1373 43 1 9.1201 -5.0213 -0.8403 44 1 8.8531 -3.4715 -1.7070 45 1 7.5330 -7.1413 -3.1580 46 1 7.4575 -6.6897 -6.1284 47 1 6.6866 -3.8495 -3.7807 48 1 5.9199 -5.4058 -3.3573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592304881.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:23 Heat of formation + Delta-G solvation = -104.438795 kcal Electronic energy + Delta-G solvation = -30770.284533 eV Core-core repulsion = 26596.501763 eV Total energy + Delta-G solvation = -4173.782770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.38552 -40.96623 -39.66580 -39.00311 -36.56796 -36.32055 -35.67763 -34.23260 -31.95944 -31.06545 -30.49283 -29.76535 -27.99329 -27.74227 -25.85852 -24.73348 -24.07507 -22.63828 -21.54654 -21.14499 -20.83183 -19.31293 -19.13238 -18.45803 -17.89651 -17.49097 -17.17015 -16.74313 -16.45729 -16.18435 -15.92128 -15.68974 -15.07865 -14.93093 -14.85882 -14.76394 -14.69131 -14.62772 -14.42425 -14.06167 -13.62473 -13.47500 -13.40945 -13.08190 -13.03471 -12.87048 -12.84680 -12.57530 -12.42510 -12.37237 -12.29884 -12.11607 -12.08359 -11.89382 -11.60719 -11.47785 -11.23773 -10.75307 -10.55500 -10.33134 -9.84549 -9.69654 -9.11275 -8.28757 -6.44223 -0.14305 0.43316 0.61523 1.07984 1.43469 1.44010 1.51873 1.95179 2.30833 2.39545 2.84151 2.97420 3.08554 3.63893 3.75216 3.79721 4.00879 4.10089 4.13109 4.23755 4.27251 4.29370 4.32125 4.47141 4.52800 4.55126 4.59589 4.72543 4.81859 4.90358 4.92371 4.98509 5.03025 5.04384 5.06092 5.16662 5.22313 5.27864 5.28903 5.37150 5.40517 5.41461 5.55816 5.62203 5.71007 5.90652 6.02588 6.05465 6.25578 6.47360 6.62904 6.73521 7.25999 7.34194 8.77709 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.002514 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.100356 B =11136.321318 C =11977.879242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.102 4.102 5 C -0.095 4.095 6 C -0.128 4.128 7 C -0.109 4.109 8 C -0.148 4.148 9 C 0.121 3.879 10 N -0.632 5.632 11 C 0.518 3.482 12 O -0.502 6.502 13 C 0.505 3.495 14 O -0.557 6.557 15 N -0.579 5.579 16 C 0.107 3.893 17 C -0.114 4.114 18 C 0.235 3.765 19 O -0.587 6.587 20 C -0.558 4.558 21 H 0.068 0.932 22 C 0.028 3.972 23 N -0.915 5.915 24 Si 0.964 3.036 25 H -0.270 1.270 26 H -0.283 1.283 27 H -0.272 1.272 28 C 0.115 3.885 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.126 0.874 40 H 0.424 0.576 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.378 0.622 46 H 0.272 0.728 47 H 0.050 0.950 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.569 13.382 15.426 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 C -0.196 4.196 4 C -0.104 4.104 5 C -0.113 4.113 6 C -0.146 4.146 7 C -0.128 4.128 8 C -0.168 4.168 9 C 0.028 3.972 10 N -0.279 5.279 11 C 0.300 3.700 12 O -0.376 6.376 13 C 0.288 3.712 14 O -0.437 6.437 15 N -0.311 5.311 16 C -0.015 4.015 17 C -0.152 4.152 18 C 0.195 3.805 19 O -0.395 6.395 20 C -0.596 4.596 21 H 0.086 0.914 22 C -0.173 4.173 23 N -0.554 5.554 24 Si 0.789 3.211 25 H -0.195 1.195 26 H -0.209 1.209 27 H -0.197 1.197 28 C -0.007 4.007 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.144 0.856 40 H 0.265 0.735 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.228 0.772 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.322 13.424 15.995 24.769 hybrid contribution 0.215 -0.593 -2.274 2.359 sum -13.107 12.831 13.721 22.907 Atomic orbital electron populations 1.21849 0.92459 1.02142 1.03259 1.20122 0.97443 0.96523 0.93900 1.21812 1.00362 0.94222 1.03212 1.19821 0.99059 0.94407 0.97131 1.21112 0.99643 1.00172 0.90369 1.21508 0.97254 0.95945 0.99916 1.21298 0.97308 0.97587 0.96570 1.21421 1.02053 1.01071 0.92253 1.17869 0.99196 0.96410 0.83742 1.43163 1.19735 1.54801 1.10224 1.19912 0.82209 0.79383 0.88481 1.90673 1.50717 1.56091 1.40155 1.19913 0.81737 0.80433 0.89082 1.90718 1.51818 1.59663 1.41493 1.48711 1.17138 1.51377 1.13888 1.22695 0.86913 1.02703 0.89173 1.22823 0.96067 1.00418 0.95902 1.19702 0.88836 0.79346 0.92655 1.86110 1.88503 1.20482 1.44446 1.21770 1.09904 1.32401 0.95487 0.91359 1.25793 0.96606 0.93818 1.01107 1.69724 1.27278 1.32892 1.25521 0.85508 0.79160 0.78402 0.77985 1.19453 1.20875 1.19732 1.22846 0.97686 0.96254 0.83910 0.90762 0.91335 0.93098 0.92118 0.94111 0.91245 0.90836 0.82933 0.82936 0.84009 0.85643 0.73522 0.87698 0.91032 0.88989 0.89574 0.77250 0.91882 0.93205 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.95 71.98 0.64 -1.08 16 2 C -0.06 -0.99 3.02 -11.54 -0.03 -1.03 16 3 C -0.14 -1.98 9.06 71.98 0.65 -1.33 16 4 C -0.10 -1.96 4.80 -19.73 -0.09 -2.06 16 5 C -0.09 -1.41 8.75 22.25 0.19 -1.22 16 6 C -0.13 -1.88 10.04 22.30 0.22 -1.65 16 7 C -0.11 -2.06 10.04 22.25 0.22 -1.84 16 8 C -0.15 -3.73 8.72 22.40 0.20 -3.54 16 9 C 0.12 3.03 6.41 38.21 0.24 3.27 16 10 N -0.63 -17.52 5.10 -304.85 -1.55 -19.08 16 11 C 0.52 17.27 7.66 87.24 0.67 17.94 16 12 O -0.50 -17.17 10.94 -3.34 -0.04 -17.21 16 13 C 0.51 20.09 7.91 87.24 0.69 20.78 16 14 O -0.56 -24.30 16.81 -3.26 -0.05 -24.35 16 15 N -0.58 -24.35 3.33 -813.48 -2.71 -27.06 16 16 C 0.11 3.97 6.05 86.85 0.53 4.50 16 17 C -0.11 -4.55 6.23 31.99 0.20 -4.35 16 18 C 0.23 11.38 0.85 -10.35 -0.01 11.37 16 19 O -0.59 -29.73 13.07 -148.98 -1.95 -31.67 16 20 C -0.56 -28.92 8.12 25.60 0.21 -28.71 16 21 H 0.07 3.45 7.78 -2.91 -0.02 3.42 16 22 C 0.03 1.44 5.28 84.66 0.45 1.89 16 23 N -0.92 -48.71 10.98 21.45 0.24 -48.47 16 24 Si 0.96 41.44 29.54 68.60 2.03 43.47 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 28 C 0.12 5.62 5.37 86.73 0.47 6.08 16 29 H 0.07 0.69 7.12 -2.39 -0.02 0.67 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.13 5.87 -2.38 -0.01 1.12 16 33 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.82 7.71 -2.39 -0.02 0.80 16 36 H 0.15 1.40 7.10 -2.91 -0.02 1.38 16 37 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.13 3.65 5.79 -2.91 -0.02 3.63 16 40 H 0.42 10.87 6.26 -92.70 -0.58 10.29 16 41 H 0.11 3.57 6.16 -2.39 -0.01 3.56 16 42 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.09 3.26 8.04 -2.39 -0.02 3.24 16 45 H 0.38 19.77 7.26 -74.06 -0.54 19.23 16 46 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 47 H 0.05 2.62 7.82 -2.39 -0.02 2.60 16 48 H 0.05 2.42 7.98 -2.38 -0.02 2.40 16 Total: -1.00 -61.62 386.51 1.29 -60.33 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -0.11 Total: 45.03 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 5.44 Total: 19.01 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -4.03 Total: -94.61 kcal Atomic # 8 Polarization: -71.19 SS G_CDS: -2.04 Total: -73.23 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -61.62 1.29 -60.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304881.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.109 kcal (2) G-P(sol) polarization free energy of solvation -61.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds