Wall clock time and date at job start Sat Apr 11 2020 07:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46945 * 2 1 4 4 C 1.53000 * 109.47269 * 120.00015 * 2 1 3 5 5 H 1.08998 * 109.46907 * 178.38099 * 4 2 1 6 6 N 1.46490 * 109.47353 * 298.38324 * 4 2 1 7 7 S 1.65606 * 120.00293 * 231.64730 * 6 4 2 8 8 O 1.42097 * 104.27845 * 182.16776 * 7 6 4 9 9 O 1.42104 * 104.27483 * 310.02967 * 7 6 4 10 10 C 1.81400 * 104.44666 * 66.09672 * 7 6 4 11 11 C 1.53000 * 117.50141 * 246.31804 * 10 7 6 12 12 C 1.52995 * 59.99926 * 252.51020 * 11 10 7 13 13 C 1.50703 * 109.46856 * 58.38436 * 4 2 1 14 14 O 1.21277 * 119.99877 * 262.47357 * 13 4 2 15 15 N 1.34776 * 120.00029 * 82.46977 * 13 4 2 16 16 C 1.46504 * 119.99751 * 184.68481 * 15 13 4 17 17 C 1.50705 * 109.46607 * 90.00526 * 16 15 13 18 18 H 1.07994 * 120.00240 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99479 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99737 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47138 * 90.00367 * 21 19 17 23 23 H 1.48501 * 109.47204 * 209.99806 * 21 19 17 24 24 H 1.48499 * 109.47444 * 330.00163 * 21 19 17 25 25 C 1.46493 * 120.00032 * 4.69227 * 15 13 4 26 26 C 1.52998 * 109.47589 * 115.81296 * 25 15 13 27 27 C 1.53006 * 109.46916 * 235.81311 * 25 15 13 28 28 H 1.08996 * 109.47297 * 55.66882 * 1 2 3 29 29 H 1.09004 * 109.46961 * 295.67008 * 1 2 3 30 30 H 1.08999 * 109.46960 * 175.66892 * 1 2 3 31 31 H 1.08997 * 109.47261 * 240.00763 * 2 1 3 32 32 H 1.09004 * 109.46792 * 56.03453 * 3 2 1 33 33 H 1.08998 * 109.47499 * 176.03111 * 3 2 1 34 34 H 1.08996 * 109.47628 * 296.03227 * 3 2 1 35 35 H 0.97006 * 119.99913 * 51.64756 * 6 4 2 36 36 H 1.09007 * 115.54781 * 32.02696 * 10 7 6 37 37 H 1.08993 * 117.49797 * 0.02562 * 11 10 7 38 38 H 1.08999 * 117.49801 * 145.02194 * 11 10 7 39 39 H 1.08998 * 117.50180 * 252.50869 * 12 11 10 40 40 H 1.09000 * 117.50004 * 107.48793 * 12 11 10 41 41 H 1.09003 * 109.47003 * 210.00214 * 16 15 13 42 42 H 1.08997 * 109.47450 * 330.00341 * 16 15 13 43 43 H 0.97002 * 119.99536 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47272 * 355.81005 * 25 15 13 45 45 H 1.09005 * 109.47201 * 59.99805 * 26 25 15 46 46 H 1.08994 * 109.47393 * 179.97438 * 26 25 15 47 47 H 1.08998 * 109.46827 * 300.00196 * 26 25 15 48 48 H 1.08998 * 109.47349 * 62.28405 * 27 25 15 49 49 H 1.09004 * 109.47069 * 182.28711 * 27 25 15 50 50 H 1.09000 * 109.47065 * 302.28336 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1297 -0.7464 1.2348 6 7 1.5839 -0.0086 2.4450 7 16 2.6715 0.4241 3.6165 8 8 1.8771 1.0356 4.6236 9 8 3.3968 -0.7693 3.8793 10 6 3.7372 1.6527 2.8130 11 6 5.2028 1.2765 2.5866 12 6 4.8331 2.3003 3.6617 13 6 1.5053 -2.1301 1.2694 14 8 0.5200 -2.3953 1.9249 15 7 2.1219 -3.0952 0.5589 16 6 1.5447 -4.4402 0.4955 17 6 0.6036 -4.5281 -0.6783 18 1 0.4505 -3.6681 -1.3132 19 6 -0.0619 -5.7067 -0.9414 20 7 0.1243 -6.7538 -0.1679 21 14 -1.2289 -5.8155 -2.3959 22 1 -0.4802 -6.2592 -3.5992 23 1 -2.3055 -6.7929 -2.0947 24 1 -1.8287 -4.4811 -2.6503 25 6 3.3693 -2.7993 -0.1499 26 6 4.5059 -3.6300 0.4492 27 6 3.2091 -3.1475 -1.6312 28 1 -0.3634 0.5795 -0.8486 29 1 -0.3633 0.4452 0.9263 30 1 -0.3633 -1.0247 -0.0776 31 1 1.8934 -0.5137 -0.8900 32 1 1.6197 1.9764 0.8524 33 1 3.1276 1.4434 0.0711 34 1 1.7359 1.9355 -0.9233 35 1 0.6447 0.2098 2.5507 36 1 3.2537 2.2721 2.0574 37 1 5.5266 0.2906 2.9201 38 1 5.6839 1.6482 1.6819 39 1 5.0709 3.3455 3.4644 40 1 4.9138 1.9881 4.7030 41 1 2.3429 -5.1729 0.3769 42 1 0.9977 -4.6446 1.4159 43 1 -0.3437 -7.5830 -0.3534 44 1 3.6019 -1.7392 -0.0490 45 1 4.2733 -4.6901 0.3483 46 1 5.4339 -3.4101 -0.0785 47 1 4.6199 -3.3819 1.5044 48 1 2.4268 -2.5267 -2.0679 49 1 4.1498 -2.9656 -2.1510 50 1 2.9367 -4.1982 -1.7300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597042577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:40 Heat of formation + Delta-G solvation = -84.389359 kcal Electronic energy + Delta-G solvation = -31562.553484 eV Core-core repulsion = 27525.084075 eV Total energy + Delta-G solvation = -4037.469409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.86555 -37.51386 -36.99031 -36.75808 -35.97491 -35.77081 -32.80433 -32.54241 -30.81205 -28.33460 -27.25794 -26.73051 -25.97649 -23.77209 -22.99342 -22.78497 -21.46004 -20.36386 -19.37650 -18.39898 -18.13766 -17.22929 -16.44973 -16.40763 -16.17486 -15.72032 -15.03672 -14.93428 -14.70609 -14.28566 -13.97952 -13.81869 -13.53387 -13.36198 -13.19682 -12.62274 -12.39928 -12.31162 -12.27780 -12.11818 -12.07534 -11.98998 -11.90615 -11.66872 -11.59936 -11.44855 -11.40825 -11.26090 -11.14659 -11.00342 -10.94644 -10.84085 -10.79359 -10.68873 -10.53632 -10.33723 -10.01470 -9.96433 -9.51783 -8.60619 -8.40532 -7.61322 -6.01451 -4.05093 0.17773 2.55635 2.87650 3.29420 3.34645 3.37718 3.41932 3.71208 3.90081 4.03583 4.22025 4.44279 4.44822 4.61698 4.68633 4.77019 4.82986 5.03115 5.07596 5.18417 5.26811 5.28101 5.33699 5.36651 5.49806 5.53286 5.56942 5.59672 5.65579 5.67085 5.85320 5.91317 6.02246 6.06210 6.17966 6.27718 6.28310 6.38248 6.52556 6.64428 6.96616 7.01766 7.15239 7.53302 7.59802 7.95498 8.27385 8.46465 8.93156 9.11435 9.58839 11.06598 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.003760 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.869233 B = 7445.240407 C = 7612.162256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.151 4.151 4 C 0.138 3.862 5 H 0.102 0.898 6 N -1.090 6.090 7 S 2.635 3.365 8 O -0.956 6.956 9 O -0.945 6.945 10 C -0.696 4.696 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.504 3.496 14 O -0.529 6.529 15 N -0.589 5.589 16 C 0.246 3.754 17 C -0.518 4.518 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.130 3.870 26 C -0.166 4.166 27 C -0.157 4.157 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.423 0.577 36 H 0.164 0.836 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.034 0.966 42 H 0.043 0.957 43 H 0.262 0.738 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 19.279 0.109 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.208 4.208 4 C 0.027 3.973 5 H 0.120 0.880 6 N -0.850 5.850 7 S 2.725 3.275 8 O -0.946 6.946 9 O -0.935 6.935 10 C -0.803 4.803 11 C -0.164 4.164 12 C -0.165 4.165 13 C 0.288 3.712 14 O -0.405 6.405 15 N -0.321 5.321 16 C 0.127 3.873 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.025 3.975 26 C -0.224 4.224 27 C -0.214 4.214 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.260 0.740 36 H 0.182 0.818 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.796 18.543 1.351 22.018 hybrid contribution -1.030 0.349 -1.523 1.871 sum 10.766 18.892 -0.172 21.745 Atomic orbital electron populations 1.21838 0.93831 1.03688 1.01379 1.21372 0.97817 0.96054 0.96538 1.21981 1.00699 0.95854 1.02248 1.20865 0.99145 0.91401 0.85901 0.88021 1.55229 1.22604 1.71101 1.36097 1.04187 0.74543 0.75247 0.73497 1.93597 1.66926 1.79357 1.54700 1.93639 1.74665 1.42165 1.82999 1.32859 1.06576 1.22490 1.18364 1.22889 0.90219 1.01523 1.01750 1.22727 0.96771 1.00310 0.96676 1.20329 0.84546 0.86071 0.80240 1.90657 1.26058 1.82067 1.41763 1.48302 1.22951 1.13112 1.47776 1.19247 0.93577 0.76260 0.98235 1.21418 1.25211 0.97306 1.11792 0.92342 1.24923 0.96754 0.95752 0.96704 1.69937 1.43011 1.02278 1.38043 0.86571 0.80812 0.77865 0.82574 1.20757 1.21246 1.19987 1.21063 0.85015 0.98303 0.93114 1.22203 0.97274 1.02042 1.00893 1.22151 1.00205 1.04998 0.94094 0.92559 0.92568 0.90930 0.89134 0.92428 0.92472 0.91935 0.74021 0.81834 0.86287 0.86855 0.86790 0.87674 0.94814 0.93936 0.92813 0.91057 0.91332 0.92255 0.92432 0.92651 0.93256 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.67 37.16 0.32 -1.71 16 2 C -0.10 -1.16 2.66 -90.62 -0.24 -1.40 16 3 C -0.15 -1.24 7.93 37.16 0.29 -0.95 16 4 C 0.14 1.99 1.45 -69.09 -0.10 1.89 16 5 H 0.10 1.23 5.98 -51.93 -0.31 0.92 16 6 N -1.09 -14.96 4.04 -5.89 -0.02 -14.98 16 7 S 2.64 34.61 5.68 -107.50 -0.61 34.00 16 8 O -0.96 -15.23 18.08 -57.54 -1.04 -16.27 16 9 O -0.94 -15.60 17.01 -57.54 -0.98 -16.58 16 10 C -0.70 -5.72 6.22 -26.73 -0.17 -5.88 16 11 C -0.13 -0.85 10.17 -26.73 -0.27 -1.13 16 12 C -0.13 -0.84 10.30 -26.74 -0.28 -1.12 16 13 C 0.50 10.24 5.77 -10.98 -0.06 10.18 16 14 O -0.53 -13.06 15.79 5.56 0.09 -12.97 16 15 N -0.59 -12.07 2.38 -167.47 -0.40 -12.47 16 16 C 0.25 6.26 4.50 -5.19 -0.02 6.24 16 17 C -0.52 -13.93 7.77 -34.44 -0.27 -14.19 16 18 H 0.06 1.54 7.68 -52.49 -0.40 1.14 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 25 C 0.13 2.04 2.82 -67.93 -0.19 1.84 16 26 C -0.17 -2.43 9.24 37.16 0.34 -2.09 16 27 C -0.16 -2.42 8.45 37.16 0.31 -2.10 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.71 6.58 -51.93 -0.34 0.37 16 30 H 0.07 1.28 7.14 -51.93 -0.37 0.91 16 31 H 0.09 1.09 7.53 -51.93 -0.39 0.69 16 32 H 0.06 0.44 6.86 -51.93 -0.36 0.08 16 33 H 0.06 0.38 7.54 -51.93 -0.39 -0.01 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.42 5.68 7.29 -34.48 -0.25 5.43 16 36 H 0.16 1.04 5.76 -51.92 -0.30 0.74 16 37 H 0.12 0.88 7.66 -51.93 -0.40 0.49 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.03 0.88 6.65 -51.93 -0.35 0.53 16 42 H 0.04 1.26 7.36 -51.93 -0.38 0.88 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 0.89 4.97 -51.93 -0.26 0.64 16 45 H 0.07 1.14 6.83 -51.93 -0.35 0.78 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 1.57 6.78 -51.93 -0.35 1.22 16 LS Contribution 402.71 15.07 6.07 6.07 Total: -1.00 -36.35 402.71 -9.75 -46.09 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.14 Total: 5.05 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.42 Total: -8.84 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.31 Total: -52.91 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.93 Total: -45.82 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 34.61 SS G_CDS: -0.61 Total: 34.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.35 -9.75 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597042577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.295 kcal (2) G-P(sol) polarization free energy of solvation -36.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds