Wall clock time and date at job start Sat Apr 11 2020 07:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46945 * 2 1 4 4 C 1.53000 * 109.47269 * 120.00015 * 2 1 3 5 5 H 1.08998 * 109.46907 * 178.38099 * 4 2 1 6 6 N 1.46490 * 109.47353 * 298.38324 * 4 2 1 7 7 S 1.65606 * 120.00293 * 231.64730 * 6 4 2 8 8 O 1.42097 * 104.27845 * 182.16776 * 7 6 4 9 9 O 1.42104 * 104.27483 * 310.02967 * 7 6 4 10 10 C 1.81400 * 104.44666 * 66.09672 * 7 6 4 11 11 C 1.53000 * 117.50141 * 246.31804 * 10 7 6 12 12 C 1.52995 * 59.99926 * 252.51020 * 11 10 7 13 13 C 1.50703 * 109.46856 * 58.38436 * 4 2 1 14 14 O 1.21277 * 119.99877 * 262.47357 * 13 4 2 15 15 N 1.34776 * 120.00029 * 82.46977 * 13 4 2 16 16 C 1.46504 * 119.99751 * 184.68481 * 15 13 4 17 17 C 1.50705 * 109.46607 * 90.00526 * 16 15 13 18 18 H 1.07994 * 120.00240 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99479 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99737 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47138 * 90.00367 * 21 19 17 23 23 H 1.48501 * 109.47204 * 209.99806 * 21 19 17 24 24 H 1.48499 * 109.47444 * 330.00163 * 21 19 17 25 25 C 1.46493 * 120.00032 * 4.69227 * 15 13 4 26 26 C 1.52998 * 109.47589 * 115.81296 * 25 15 13 27 27 C 1.53006 * 109.46916 * 235.81311 * 25 15 13 28 28 H 1.08996 * 109.47297 * 55.66882 * 1 2 3 29 29 H 1.09004 * 109.46961 * 295.67008 * 1 2 3 30 30 H 1.08999 * 109.46960 * 175.66892 * 1 2 3 31 31 H 1.08997 * 109.47261 * 240.00763 * 2 1 3 32 32 H 1.09004 * 109.46792 * 56.03453 * 3 2 1 33 33 H 1.08998 * 109.47499 * 176.03111 * 3 2 1 34 34 H 1.08996 * 109.47628 * 296.03227 * 3 2 1 35 35 H 0.97006 * 119.99913 * 51.64756 * 6 4 2 36 36 H 1.09007 * 115.54781 * 32.02696 * 10 7 6 37 37 H 1.08993 * 117.49797 * 0.02562 * 11 10 7 38 38 H 1.08999 * 117.49801 * 145.02194 * 11 10 7 39 39 H 1.08998 * 117.50180 * 252.50869 * 12 11 10 40 40 H 1.09000 * 117.50004 * 107.48793 * 12 11 10 41 41 H 1.09003 * 109.47003 * 210.00214 * 16 15 13 42 42 H 1.08997 * 109.47450 * 330.00341 * 16 15 13 43 43 H 0.97002 * 119.99536 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47272 * 355.81005 * 25 15 13 45 45 H 1.09005 * 109.47201 * 59.99805 * 26 25 15 46 46 H 1.08994 * 109.47393 * 179.97438 * 26 25 15 47 47 H 1.08998 * 109.46827 * 300.00196 * 26 25 15 48 48 H 1.08998 * 109.47349 * 62.28405 * 27 25 15 49 49 H 1.09004 * 109.47069 * 182.28711 * 27 25 15 50 50 H 1.09000 * 109.47065 * 302.28336 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1297 -0.7464 1.2348 6 7 1.5839 -0.0086 2.4450 7 16 2.6715 0.4241 3.6165 8 8 1.8771 1.0356 4.6236 9 8 3.3968 -0.7693 3.8793 10 6 3.7372 1.6527 2.8130 11 6 5.2028 1.2765 2.5866 12 6 4.8331 2.3003 3.6617 13 6 1.5053 -2.1301 1.2694 14 8 0.5200 -2.3953 1.9249 15 7 2.1219 -3.0952 0.5589 16 6 1.5447 -4.4402 0.4955 17 6 0.6036 -4.5281 -0.6783 18 1 0.4505 -3.6681 -1.3132 19 6 -0.0619 -5.7067 -0.9414 20 7 0.1243 -6.7538 -0.1679 21 14 -1.2289 -5.8155 -2.3959 22 1 -0.4802 -6.2592 -3.5992 23 1 -2.3055 -6.7929 -2.0947 24 1 -1.8287 -4.4811 -2.6503 25 6 3.3693 -2.7993 -0.1499 26 6 4.5059 -3.6300 0.4492 27 6 3.2091 -3.1475 -1.6312 28 1 -0.3634 0.5795 -0.8486 29 1 -0.3633 0.4452 0.9263 30 1 -0.3633 -1.0247 -0.0776 31 1 1.8934 -0.5137 -0.8900 32 1 1.6197 1.9764 0.8524 33 1 3.1276 1.4434 0.0711 34 1 1.7359 1.9355 -0.9233 35 1 0.6447 0.2098 2.5507 36 1 3.2537 2.2721 2.0574 37 1 5.5266 0.2906 2.9201 38 1 5.6839 1.6482 1.6819 39 1 5.0709 3.3455 3.4644 40 1 4.9138 1.9881 4.7030 41 1 2.3429 -5.1729 0.3769 42 1 0.9977 -4.6446 1.4159 43 1 -0.3437 -7.5830 -0.3534 44 1 3.6019 -1.7392 -0.0490 45 1 4.2733 -4.6901 0.3483 46 1 5.4339 -3.4101 -0.0785 47 1 4.6199 -3.3819 1.5044 48 1 2.4268 -2.5267 -2.0679 49 1 4.1498 -2.9656 -2.1510 50 1 2.9367 -4.1982 -1.7300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597042577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:39 Heat of formation + Delta-G solvation = -112.083690 kcal Electronic energy + Delta-G solvation = -31563.754401 eV Core-core repulsion = 27525.084075 eV Total energy + Delta-G solvation = -4038.670326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32014 -38.42356 -38.02406 -37.81239 -37.29721 -37.10209 -34.88082 -33.54378 -32.39021 -30.06287 -28.13011 -27.97021 -27.50802 -24.74497 -24.45325 -23.45267 -22.83446 -21.40665 -20.45510 -19.78997 -19.14647 -18.56020 -18.36856 -17.62339 -17.31878 -16.90609 -16.49530 -16.18170 -15.83529 -15.58436 -15.33188 -14.89287 -14.79575 -14.56043 -14.49924 -14.08275 -13.71252 -13.48214 -13.39623 -13.36338 -13.22588 -13.17354 -13.11694 -12.89241 -12.79060 -12.71650 -12.50835 -12.48670 -12.28486 -12.22640 -12.12756 -12.06349 -12.03626 -11.84786 -11.67947 -11.64489 -11.54246 -11.42840 -11.10754 -10.59171 -10.09800 -9.37656 -8.16761 -6.28882 -0.79596 1.36452 1.39697 1.49109 1.55351 1.84941 2.21636 2.34540 2.47419 2.82312 3.13080 3.26399 3.49579 3.55470 3.65710 3.76353 3.85202 3.97295 4.01930 4.12323 4.29281 4.32524 4.44526 4.53476 4.66643 4.68027 4.75256 4.85566 4.88821 4.90342 4.95521 4.98897 5.06485 5.08836 5.10251 5.11898 5.14931 5.25018 5.27663 5.41397 5.47221 5.49320 5.64604 5.69346 5.90022 5.93101 6.13385 6.77396 6.86581 7.34076 7.52765 8.90902 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.003760 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.869233 B = 7445.240407 C = 7612.162256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.149 4.149 4 C 0.150 3.850 5 H 0.132 0.868 6 N -1.095 6.095 7 S 2.624 3.376 8 O -0.996 6.996 9 O -0.993 6.993 10 C -0.677 4.677 11 C -0.119 4.119 12 C -0.126 4.126 13 C 0.488 3.512 14 O -0.590 6.590 15 N -0.595 5.595 16 C 0.264 3.736 17 C -0.518 4.518 18 H 0.061 0.939 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.963 3.037 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.270 1.270 25 C 0.119 3.881 26 C -0.162 4.162 27 C -0.150 4.150 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.019 0.981 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.420 0.580 36 H 0.196 0.804 37 H 0.109 0.891 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.100 0.900 41 H 0.021 0.979 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.116 0.884 45 H 0.037 0.963 46 H 0.104 0.896 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.093 0.907 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.990 23.490 -2.763 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.206 4.206 4 C 0.039 3.961 5 H 0.149 0.851 6 N -0.853 5.853 7 S 2.722 3.278 8 O -0.986 6.986 9 O -0.983 6.983 10 C -0.790 4.790 11 C -0.157 4.157 12 C -0.164 4.164 13 C 0.275 3.725 14 O -0.470 6.470 15 N -0.326 5.326 16 C 0.143 3.857 17 C -0.556 4.556 18 H 0.079 0.921 19 C -0.195 4.195 20 N -0.574 5.574 21 Si 0.788 3.212 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.195 1.195 25 C 0.016 3.984 26 C -0.220 4.220 27 C -0.208 4.208 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.256 0.744 36 H 0.213 0.787 37 H 0.127 0.873 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.118 0.882 41 H 0.039 0.961 42 H 0.002 0.998 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.056 0.944 46 H 0.123 0.877 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.112 0.888 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.620 22.734 -1.514 27.071 hybrid contribution -1.826 -0.930 -0.550 2.121 sum 12.794 21.804 -2.065 25.365 Atomic orbital electron populations 1.21832 0.95723 1.00658 1.02567 1.21431 0.96250 0.98756 0.94843 1.22019 1.02584 0.92378 1.03581 1.20907 1.00395 0.87274 0.87574 0.85085 1.55216 1.22920 1.71310 1.35827 1.04189 0.74551 0.75574 0.73494 1.93540 1.68538 1.79725 1.56814 1.93580 1.75126 1.45512 1.84057 1.32344 1.06115 1.21058 1.19501 1.23195 0.87961 1.01318 1.03198 1.23086 0.94503 1.02200 0.96658 1.21627 0.83740 0.88449 0.78675 1.90614 1.28815 1.83461 1.44116 1.48358 1.24560 1.11268 1.48448 1.18616 0.92660 0.79308 0.95118 1.21631 1.25067 0.97241 1.11703 0.92099 1.25841 0.98545 0.95436 0.99642 1.70085 1.44353 1.02910 1.40066 0.85486 0.78471 0.77811 0.79471 1.18825 1.21431 1.19476 1.21539 0.82868 1.01053 0.92892 1.22194 0.98848 0.99916 1.01078 1.22080 1.02404 1.02175 0.94140 0.90261 0.92326 0.96182 0.88687 0.91690 0.89471 0.90245 0.74357 0.78729 0.87303 0.83180 0.83617 0.88156 0.96089 0.99765 0.92797 0.86621 0.94423 0.87722 0.93202 0.92889 0.88794 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 8.67 71.98 0.62 -3.39 16 2 C -0.09 -1.96 2.66 -10.79 -0.03 -1.98 16 3 C -0.15 -1.64 7.93 71.98 0.57 -1.07 16 4 C 0.15 4.13 1.45 44.25 0.06 4.20 16 5 H 0.13 2.75 5.98 -2.39 -0.01 2.74 16 6 N -1.09 -29.84 4.04 -172.54 -0.70 -30.53 16 7 S 2.62 67.65 5.68 -56.49 -0.32 67.33 16 8 O -1.00 -32.48 18.08 -127.65 -2.31 -34.79 16 9 O -0.99 -33.53 17.01 -127.65 -2.17 -35.70 16 10 C -0.68 -8.18 6.22 30.59 0.19 -7.99 16 11 C -0.12 -0.98 10.17 30.59 0.31 -0.67 16 12 C -0.13 -1.10 10.30 30.59 0.31 -0.78 16 13 C 0.49 20.75 5.77 87.66 0.51 21.25 16 14 O -0.59 -31.61 15.79 -3.02 -0.05 -31.66 16 15 N -0.59 -25.40 2.38 -802.14 -1.91 -27.32 16 16 C 0.26 14.54 4.50 85.63 0.39 14.92 16 17 C -0.52 -29.24 7.77 25.60 0.20 -29.04 16 18 H 0.06 3.33 7.68 -2.91 -0.02 3.31 16 19 C 0.00 0.20 5.46 84.65 0.46 0.66 16 20 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 21 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 C 0.12 3.57 2.82 44.99 0.13 3.69 16 26 C -0.16 -4.58 9.24 71.98 0.67 -3.92 16 27 C -0.15 -4.37 8.45 71.98 0.61 -3.76 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.49 6.58 -2.38 -0.02 1.48 16 30 H 0.02 0.72 7.14 -2.39 -0.02 0.70 16 31 H 0.09 1.95 7.53 -2.39 -0.02 1.93 16 32 H 0.06 0.66 6.86 -2.38 -0.02 0.64 16 33 H 0.09 0.49 7.54 -2.39 -0.02 0.47 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.42 11.72 7.29 -96.74 -0.71 11.02 16 36 H 0.20 1.24 5.76 -2.38 -0.01 1.23 16 37 H 0.11 1.21 7.66 -2.39 -0.02 1.19 16 38 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.02 1.19 6.65 -2.39 -0.02 1.18 16 42 H -0.02 -1.04 7.36 -2.39 -0.02 -1.06 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.12 2.43 4.97 -2.39 -0.01 2.42 16 45 H 0.04 1.28 6.83 -2.38 -0.02 1.26 16 46 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.05 1.55 8.11 -2.39 -0.02 1.53 16 49 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.04 1.60 6.78 -2.39 -0.02 1.58 16 Total: -1.00 -90.62 402.71 0.09 -90.53 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.24 Total: 20.32 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 5.00 Total: -7.88 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -2.33 Total: -115.20 kcal Atomic # 8 Polarization: -97.62 SS G_CDS: -4.53 Total: -102.14 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 67.65 SS G_CDS: -0.32 Total: 67.33 kcal Total: -90.62 0.09 -90.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597042577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.559 kcal (2) G-P(sol) polarization free energy of solvation -90.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds