Wall clock time and date at job start Sat Apr 11 2020 07:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47000 * 2 1 4 4 C 1.52998 * 109.47103 * 119.99944 * 2 1 3 5 5 H 1.09004 * 109.47275 * 54.70961 * 4 2 1 6 6 N 1.46500 * 109.47575 * 174.71263 * 4 2 1 7 7 S 1.65598 * 119.99938 * 265.00372 * 6 4 2 8 8 O 1.42103 * 104.27550 * 181.06830 * 7 6 4 9 9 O 1.42099 * 104.27694 * 308.91981 * 7 6 4 10 10 C 1.81397 * 104.45076 * 64.99442 * 7 6 4 11 11 C 1.52998 * 117.49963 * 253.62195 * 10 7 6 12 12 C 1.53002 * 117.49736 * 184.99738 * 10 7 6 13 13 C 1.50711 * 109.47234 * 294.71356 * 4 2 1 14 14 O 1.21276 * 120.00037 * 256.23749 * 13 4 2 15 15 N 1.34772 * 119.99604 * 76.23779 * 13 4 2 16 16 C 1.46505 * 119.99626 * 175.73932 * 15 13 4 17 17 C 1.53000 * 109.47186 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.46613 * 299.99588 * 17 16 15 19 19 C 1.52998 * 109.47230 * 59.99357 * 17 16 15 20 20 C 1.50696 * 109.47120 * 179.97438 * 17 16 15 21 21 H 1.07994 * 120.00364 * 3.30645 * 20 17 16 22 22 C 1.37880 * 120.00016 * 183.31383 * 20 17 16 23 23 N 1.31511 * 120.00123 * 189.84029 * 22 20 17 24 24 Si 1.86810 * 119.99925 * 9.84103 * 22 20 17 25 25 H 1.48497 * 109.46770 * 89.17969 * 24 22 20 26 26 H 1.48501 * 109.47027 * 209.18204 * 24 22 20 27 27 H 1.48503 * 109.46718 * 329.17998 * 24 22 20 28 28 H 1.08999 * 109.47107 * 176.91176 * 1 2 3 29 29 H 1.08993 * 109.46929 * 56.91511 * 1 2 3 30 30 H 1.09000 * 109.46998 * 296.91302 * 1 2 3 31 31 H 1.08996 * 109.46902 * 239.99669 * 2 1 3 32 32 H 1.09005 * 109.47436 * 59.99901 * 3 2 1 33 33 H 1.09005 * 109.46954 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47647 * 299.99838 * 3 2 1 35 35 H 0.97005 * 119.99621 * 84.99396 * 6 4 2 36 36 H 1.09006 * 115.55167 * 39.33423 * 10 7 6 37 37 H 1.09001 * 117.49779 * 359.97438 * 11 10 7 38 38 H 1.08993 * 117.49995 * 145.02306 * 11 10 7 39 39 H 1.09001 * 117.49724 * 214.97835 * 12 10 7 40 40 H 1.09001 * 117.49748 * 0.02562 * 12 10 7 41 41 H 0.96994 * 120.00410 * 355.73151 * 15 13 4 42 42 H 1.09001 * 109.46868 * 299.99282 * 16 15 13 43 43 H 1.08998 * 109.47523 * 59.99734 * 16 15 13 44 44 H 1.08996 * 109.47143 * 67.77428 * 18 17 16 45 45 H 1.09004 * 109.46926 * 187.77087 * 18 17 16 46 46 H 1.09000 * 109.47232 * 307.76484 * 18 17 16 47 47 H 1.09001 * 109.47292 * 60.00476 * 19 17 16 48 48 H 1.09006 * 109.47045 * 179.97438 * 19 17 16 49 49 H 1.09002 * 109.47251 * 300.00298 * 19 17 16 50 50 H 0.96997 * 119.99958 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6014 -1.7179 1.2979 6 7 3.4995 -0.8325 1.1874 7 16 4.2004 -2.2084 0.5892 8 8 5.5963 -1.9700 0.7063 9 8 3.5743 -3.2619 1.3086 10 6 3.7052 -2.2470 -1.1555 11 6 2.6423 -3.2681 -1.5658 12 6 4.1018 -3.4764 -1.9753 13 6 1.6474 0.0608 2.4763 14 8 2.4745 0.7285 3.0602 15 7 0.3772 0.0180 2.9246 16 6 0.0163 0.7020 4.1690 17 6 -1.4739 0.4980 4.4493 18 6 -2.2939 1.0753 3.2938 19 6 -1.7673 -0.9974 4.5856 20 6 -1.8450 1.2010 5.7296 21 1 -1.1061 1.7836 6.2595 22 6 -3.1280 1.1001 6.2246 23 7 -3.5077 1.8616 7.2273 24 14 -4.3268 -0.1183 5.4709 25 1 -4.2041 -1.4262 6.1634 26 1 -5.7127 0.3934 5.6213 27 1 -4.0164 -0.2906 4.0289 28 1 -0.3633 -1.0262 -0.0554 29 1 -0.3633 0.5610 -0.8610 30 1 -0.3633 0.4652 0.9164 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 4.0552 -0.1001 1.4967 36 1 3.7004 -1.2829 -1.6642 37 1 2.2409 -3.9171 -0.7874 38 1 1.9379 -2.9760 -2.3445 39 1 4.3574 -3.3212 -3.0236 40 1 4.6598 -4.2622 -1.4662 41 1 -0.2981 -0.4654 2.4235 42 1 0.6001 0.2903 4.9923 43 1 0.2256 1.7673 4.0721 44 1 -2.1288 0.4779 2.3972 45 1 -3.3523 1.0555 3.5538 46 1 -1.9848 2.1038 3.1072 47 1 -1.1831 -1.4087 5.4088 48 1 -2.8289 -1.1427 4.7858 49 1 -1.4987 -1.5062 3.6598 50 1 -4.4103 1.7909 7.5753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597763451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:43 Heat of formation + Delta-G solvation = -70.041232 kcal Electronic energy + Delta-G solvation = -30634.322003 eV Core-core repulsion = 26597.474775 eV Total energy + Delta-G solvation = -4036.847228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.26044 -37.76692 -37.20642 -37.14573 -36.24759 -36.21829 -33.74090 -32.86961 -31.50876 -27.71177 -27.11314 -26.42388 -25.59972 -24.70090 -24.05870 -23.15242 -21.45180 -20.02557 -19.55198 -19.19730 -18.34725 -17.69421 -16.75655 -16.34606 -16.03557 -15.98061 -15.79316 -15.20729 -15.04372 -14.58616 -14.34223 -14.08984 -13.93696 -13.57637 -13.09373 -12.96750 -12.70036 -12.67212 -12.47833 -12.33258 -12.26189 -12.21946 -12.21472 -12.15718 -12.02604 -11.87393 -11.65023 -11.61891 -11.32230 -11.27262 -11.08393 -10.92283 -10.47500 -10.34710 -10.21559 -10.10225 -10.01517 -9.43771 -9.10187 -8.68009 -8.62631 -8.51353 -6.16098 -4.15631 -0.03870 2.29587 2.70154 2.80738 3.21335 3.27572 3.36217 3.45689 3.50048 3.83786 4.05077 4.28474 4.32606 4.39499 4.41886 4.57443 4.62358 4.87093 4.94078 4.96749 5.07865 5.14844 5.24684 5.31426 5.38921 5.42146 5.50958 5.62699 5.70566 5.74396 5.79201 5.98128 6.00661 6.05171 6.13298 6.30691 6.42788 6.46884 6.56339 6.65336 6.68640 6.78594 6.89789 7.16227 7.38327 7.67468 7.79492 8.39075 8.46168 8.88003 9.46333 10.97033 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002909 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.225651 B = 9624.558343 C = 9747.152545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.109 4.109 3 C -0.151 4.151 4 C 0.133 3.867 5 H 0.112 0.888 6 N -1.096 6.096 7 S 2.641 3.359 8 O -0.952 6.952 9 O -0.950 6.950 10 C -0.690 4.690 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.513 3.487 14 O -0.535 6.535 15 N -0.719 5.719 16 C 0.140 3.860 17 C 0.028 3.972 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.511 4.511 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.894 5.894 24 Si 0.884 3.116 25 H -0.287 1.287 26 H -0.305 1.305 27 H -0.244 1.244 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.427 0.573 36 H 0.162 0.838 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.398 0.602 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.022 0.978 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.042 0.958 49 H 0.029 0.971 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 -8.961 -23.010 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.129 4.129 3 C -0.208 4.208 4 C 0.021 3.979 5 H 0.130 0.870 6 N -0.856 5.856 7 S 2.731 3.269 8 O -0.942 6.942 9 O -0.940 6.940 10 C -0.798 4.798 11 C -0.163 4.163 12 C -0.165 4.165 13 C 0.296 3.704 14 O -0.412 6.412 15 N -0.372 5.372 16 C 0.018 3.982 17 C 0.027 3.973 18 C -0.202 4.202 19 C -0.206 4.206 20 C -0.549 4.549 21 H 0.095 0.905 22 C -0.128 4.128 23 N -0.531 5.531 24 Si 0.717 3.283 25 H -0.214 1.214 26 H -0.234 1.234 27 H -0.170 1.170 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.265 0.735 36 H 0.180 0.820 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.235 0.765 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.989 -9.165 -21.985 26.232 hybrid contribution -1.185 -0.080 -0.887 1.482 sum 9.804 -9.245 -22.873 26.547 Atomic orbital electron populations 1.22161 0.93850 1.02709 1.03998 1.21627 0.96899 0.97809 0.96593 1.21866 1.01454 0.94872 1.02639 1.20863 0.81020 1.01204 0.94771 0.87038 1.55294 1.13329 1.37878 1.79111 1.04006 0.73700 0.73281 0.75895 1.93616 1.30121 1.84538 1.85956 1.93618 1.77631 1.55177 1.67562 1.32711 1.18087 1.03908 1.25072 1.22901 0.91990 0.97430 1.04013 1.22761 0.98653 0.94084 1.00994 1.20205 0.83008 0.82070 0.85094 1.90681 1.50325 1.41599 1.58611 1.46534 1.09339 1.54448 1.26878 1.21572 0.96954 0.96436 0.83278 1.18725 0.90048 0.92462 0.96064 1.22355 1.01506 0.99728 0.96581 1.22372 1.00360 0.98350 0.99475 1.20725 0.97312 1.31203 1.05704 0.90518 1.24992 0.97814 0.95276 0.94753 1.69918 1.18947 1.37798 1.26398 0.87325 0.79143 0.81084 0.80763 1.21436 1.23380 1.17043 0.91889 0.91403 0.90766 0.89713 0.91706 0.92212 0.92288 0.73523 0.82000 0.86267 0.86788 0.86712 0.87565 0.76457 0.91804 0.91653 0.95939 0.92370 0.93332 0.92646 0.93981 0.95157 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 8.49 37.16 0.32 -1.03 16 2 C -0.11 -0.89 2.88 -90.62 -0.26 -1.16 16 3 C -0.15 -1.41 8.76 37.15 0.33 -1.08 16 4 C 0.13 1.44 2.42 -69.08 -0.17 1.28 16 5 H 0.11 1.06 7.48 -51.93 -0.39 0.67 16 6 N -1.10 -11.80 4.76 -5.88 -0.03 -11.83 16 7 S 2.64 27.28 5.80 -107.50 -0.62 26.66 16 8 O -0.95 -12.95 18.08 -57.54 -1.04 -13.99 16 9 O -0.95 -12.50 16.70 -57.54 -0.96 -13.46 16 10 C -0.69 -4.28 5.17 -26.73 -0.14 -4.42 16 11 C -0.13 -0.63 10.17 -26.73 -0.27 -0.90 16 12 C -0.13 -0.64 10.30 -26.73 -0.28 -0.92 16 13 C 0.51 7.66 5.34 -10.98 -0.06 7.60 16 14 O -0.54 -9.82 15.91 5.56 0.09 -9.73 16 15 N -0.72 -10.88 3.98 -60.29 -0.24 -11.12 16 16 C 0.14 2.67 4.50 -4.04 -0.02 2.65 16 17 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 18 C -0.14 -2.75 7.54 37.16 0.28 -2.46 16 19 C -0.15 -2.91 7.51 37.16 0.28 -2.63 16 20 C -0.51 -13.41 8.62 -34.44 -0.30 -13.71 16 21 H 0.08 2.22 7.99 -52.49 -0.42 1.81 16 22 C 0.07 2.02 5.38 -17.82 -0.10 1.93 16 23 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 24 Si 0.88 20.55 22.79 -169.99 -3.87 16.67 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.31 -7.30 7.11 56.52 0.40 -6.89 16 27 H -0.24 -5.05 4.45 56.52 0.25 -4.80 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.74 4.98 -51.93 -0.26 0.48 16 31 H 0.08 0.49 6.06 -51.93 -0.31 0.17 16 32 H 0.06 0.77 7.00 -51.93 -0.36 0.41 16 33 H 0.06 0.53 7.64 -51.93 -0.40 0.13 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.43 4.81 7.90 -34.47 -0.27 4.53 16 36 H 0.16 0.73 7.53 -51.93 -0.39 0.34 16 37 H 0.12 0.64 7.68 -51.93 -0.40 0.24 16 38 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.40 5.16 4.29 -40.82 -0.18 4.98 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.02 0.34 6.73 -51.93 -0.35 -0.01 16 45 H 0.06 1.19 4.19 -51.93 -0.22 0.97 16 46 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.04 0.87 2.24 -51.93 -0.12 0.76 16 49 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 50 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -34.86 386.49 -8.47 -43.33 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.93 Total: 7.68 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.46 Total: -14.37 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.51 Total: -48.63 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.91 Total: -37.18 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -3.87 Total: 16.67 kcal Atomic # 16 Polarization: 27.28 SS G_CDS: -0.62 Total: 26.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.86 -8.47 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.711 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds