Wall clock time and date at job start Sat Apr 11 2020 07:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47000 * 2 1 4 4 C 1.52998 * 109.47103 * 119.99944 * 2 1 3 5 5 H 1.09004 * 109.47275 * 54.70961 * 4 2 1 6 6 N 1.46500 * 109.47575 * 174.71263 * 4 2 1 7 7 S 1.65598 * 119.99938 * 265.00372 * 6 4 2 8 8 O 1.42103 * 104.27550 * 181.06830 * 7 6 4 9 9 O 1.42099 * 104.27694 * 308.91981 * 7 6 4 10 10 C 1.81397 * 104.45076 * 64.99442 * 7 6 4 11 11 C 1.52998 * 117.49963 * 253.62195 * 10 7 6 12 12 C 1.53002 * 117.49736 * 184.99738 * 10 7 6 13 13 C 1.50711 * 109.47234 * 294.71356 * 4 2 1 14 14 O 1.21276 * 120.00037 * 256.23749 * 13 4 2 15 15 N 1.34772 * 119.99604 * 76.23779 * 13 4 2 16 16 C 1.46505 * 119.99626 * 175.73932 * 15 13 4 17 17 C 1.53000 * 109.47186 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.46613 * 299.99588 * 17 16 15 19 19 C 1.52998 * 109.47230 * 59.99357 * 17 16 15 20 20 C 1.50696 * 109.47120 * 179.97438 * 17 16 15 21 21 H 1.07994 * 120.00364 * 3.30645 * 20 17 16 22 22 C 1.37880 * 120.00016 * 183.31383 * 20 17 16 23 23 N 1.31511 * 120.00123 * 189.84029 * 22 20 17 24 24 Si 1.86810 * 119.99925 * 9.84103 * 22 20 17 25 25 H 1.48497 * 109.46770 * 89.17969 * 24 22 20 26 26 H 1.48501 * 109.47027 * 209.18204 * 24 22 20 27 27 H 1.48503 * 109.46718 * 329.17998 * 24 22 20 28 28 H 1.08999 * 109.47107 * 176.91176 * 1 2 3 29 29 H 1.08993 * 109.46929 * 56.91511 * 1 2 3 30 30 H 1.09000 * 109.46998 * 296.91302 * 1 2 3 31 31 H 1.08996 * 109.46902 * 239.99669 * 2 1 3 32 32 H 1.09005 * 109.47436 * 59.99901 * 3 2 1 33 33 H 1.09005 * 109.46954 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47647 * 299.99838 * 3 2 1 35 35 H 0.97005 * 119.99621 * 84.99396 * 6 4 2 36 36 H 1.09006 * 115.55167 * 39.33423 * 10 7 6 37 37 H 1.09001 * 117.49779 * 359.97438 * 11 10 7 38 38 H 1.08993 * 117.49995 * 145.02306 * 11 10 7 39 39 H 1.09001 * 117.49724 * 214.97835 * 12 10 7 40 40 H 1.09001 * 117.49748 * 0.02562 * 12 10 7 41 41 H 0.96994 * 120.00410 * 355.73151 * 15 13 4 42 42 H 1.09001 * 109.46868 * 299.99282 * 16 15 13 43 43 H 1.08998 * 109.47523 * 59.99734 * 16 15 13 44 44 H 1.08996 * 109.47143 * 67.77428 * 18 17 16 45 45 H 1.09004 * 109.46926 * 187.77087 * 18 17 16 46 46 H 1.09000 * 109.47232 * 307.76484 * 18 17 16 47 47 H 1.09001 * 109.47292 * 60.00476 * 19 17 16 48 48 H 1.09006 * 109.47045 * 179.97438 * 19 17 16 49 49 H 1.09002 * 109.47251 * 300.00298 * 19 17 16 50 50 H 0.96997 * 119.99958 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6014 -1.7179 1.2979 6 7 3.4995 -0.8325 1.1874 7 16 4.2004 -2.2084 0.5892 8 8 5.5963 -1.9700 0.7063 9 8 3.5743 -3.2619 1.3086 10 6 3.7052 -2.2470 -1.1555 11 6 2.6423 -3.2681 -1.5658 12 6 4.1018 -3.4764 -1.9753 13 6 1.6474 0.0608 2.4763 14 8 2.4745 0.7285 3.0602 15 7 0.3772 0.0180 2.9246 16 6 0.0163 0.7020 4.1690 17 6 -1.4739 0.4980 4.4493 18 6 -2.2939 1.0753 3.2938 19 6 -1.7673 -0.9974 4.5856 20 6 -1.8450 1.2010 5.7296 21 1 -1.1061 1.7836 6.2595 22 6 -3.1280 1.1001 6.2246 23 7 -3.5077 1.8616 7.2273 24 14 -4.3268 -0.1183 5.4709 25 1 -4.2041 -1.4262 6.1634 26 1 -5.7127 0.3934 5.6213 27 1 -4.0164 -0.2906 4.0289 28 1 -0.3633 -1.0262 -0.0554 29 1 -0.3633 0.5610 -0.8610 30 1 -0.3633 0.4652 0.9164 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 4.0552 -0.1001 1.4967 36 1 3.7004 -1.2829 -1.6642 37 1 2.2409 -3.9171 -0.7874 38 1 1.9379 -2.9760 -2.3445 39 1 4.3574 -3.3212 -3.0236 40 1 4.6598 -4.2622 -1.4662 41 1 -0.2981 -0.4654 2.4235 42 1 0.6001 0.2903 4.9923 43 1 0.2256 1.7673 4.0721 44 1 -2.1288 0.4779 2.3972 45 1 -3.3523 1.0555 3.5538 46 1 -1.9848 2.1038 3.1072 47 1 -1.1831 -1.4087 5.4088 48 1 -2.8289 -1.1427 4.7858 49 1 -1.4987 -1.5062 3.6598 50 1 -4.4103 1.7909 7.5753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597763451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:42 Heat of formation + Delta-G solvation = -98.387813 kcal Electronic energy + Delta-G solvation = -30635.551203 eV Core-core repulsion = 26597.474775 eV Total energy + Delta-G solvation = -4038.076428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.41261 -38.73998 -38.38902 -37.78121 -37.30906 -37.11223 -35.15328 -33.89948 -33.30687 -28.78484 -28.04763 -27.77738 -27.20182 -26.34919 -24.59135 -23.47307 -22.45010 -21.15856 -20.80146 -20.27662 -19.20024 -18.54232 -18.09475 -17.59217 -17.44432 -16.85284 -16.72073 -16.66452 -16.00213 -15.56606 -15.38494 -15.21189 -14.85455 -14.67580 -14.47542 -14.32574 -14.24226 -13.99520 -13.77128 -13.43551 -13.35623 -13.23252 -13.13155 -12.96727 -12.76095 -12.58701 -12.49727 -12.37487 -12.17421 -12.10493 -12.05274 -11.94473 -11.88534 -11.76586 -11.71587 -11.48336 -11.06301 -10.95136 -10.65563 -10.42798 -10.30074 -9.98369 -8.28224 -6.32365 -0.78808 1.37792 1.39474 1.49772 1.52596 1.65498 2.19029 2.34283 2.36408 2.81813 3.08765 3.24883 3.48759 3.60757 3.72936 3.86033 3.89313 3.98251 4.06431 4.18225 4.24397 4.33192 4.42008 4.62278 4.67382 4.68270 4.76664 4.78558 4.82962 4.85515 4.89937 4.95770 4.97919 5.03331 5.06765 5.09489 5.12435 5.18284 5.19654 5.39933 5.44619 5.50879 5.54287 5.73325 5.81341 5.88472 6.30565 6.59546 6.73486 7.24679 7.33645 8.89210 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002909 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.225651 B = 9624.558343 C = 9747.152545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.102 4.102 3 C -0.153 4.153 4 C 0.137 3.863 5 H 0.133 0.867 6 N -1.102 6.102 7 S 2.639 3.361 8 O -0.996 6.996 9 O -0.987 6.987 10 C -0.676 4.676 11 C -0.117 4.117 12 C -0.131 4.131 13 C 0.509 3.491 14 O -0.578 6.578 15 N -0.707 5.707 16 C 0.155 3.845 17 C 0.028 3.972 18 C -0.142 4.142 19 C -0.150 4.150 20 C -0.516 4.516 21 H 0.024 0.976 22 C 0.012 3.988 23 N -0.952 5.952 24 Si 0.943 3.057 25 H -0.286 1.286 26 H -0.316 1.316 27 H -0.190 1.190 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.123 0.877 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.422 0.578 36 H 0.189 0.811 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.103 0.897 41 H 0.414 0.586 42 H 0.038 0.962 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.043 0.957 48 H 0.037 0.963 49 H 0.077 0.923 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.997 -11.607 -28.497 32.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.122 4.122 3 C -0.211 4.211 4 C 0.026 3.974 5 H 0.150 0.850 6 N -0.861 5.861 7 S 2.736 3.264 8 O -0.986 6.986 9 O -0.977 6.977 10 C -0.789 4.789 11 C -0.155 4.155 12 C -0.170 4.170 13 C 0.294 3.706 14 O -0.457 6.457 15 N -0.362 5.362 16 C 0.031 3.969 17 C 0.027 3.973 18 C -0.199 4.199 19 C -0.207 4.207 20 C -0.554 4.554 21 H 0.042 0.958 22 C -0.184 4.184 23 N -0.592 5.592 24 Si 0.772 3.228 25 H -0.213 1.213 26 H -0.245 1.245 27 H -0.113 1.113 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.258 0.742 36 H 0.207 0.793 37 H 0.133 0.867 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.121 0.879 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.909 -11.834 -27.464 31.504 hybrid contribution -0.688 0.814 0.828 1.350 sum 9.221 -11.020 -26.636 30.264 Atomic orbital electron populations 1.22227 0.93048 1.04402 1.03465 1.21701 0.97507 0.96755 0.96215 1.21890 1.01504 0.95823 1.01852 1.21029 0.81151 1.01705 0.93554 0.84970 1.55282 1.13307 1.37485 1.79984 1.03780 0.72618 0.72276 0.77770 1.93558 1.32723 1.84855 1.87492 1.93564 1.77711 1.56230 1.70167 1.32291 1.20132 1.06170 1.20339 1.23177 0.92242 0.95803 1.04255 1.23074 0.99102 0.92839 1.01969 1.21065 0.82136 0.81513 0.85879 1.90667 1.51431 1.43422 1.60179 1.46280 1.10195 1.54229 1.25482 1.21050 0.95795 0.95444 0.84587 1.18656 0.91172 0.93356 0.94164 1.22258 0.99991 1.00304 0.97353 1.22328 0.99795 0.96920 1.01608 1.21065 0.96215 1.30473 1.07664 0.95755 1.25929 1.00074 0.97167 0.95265 1.70099 1.19560 1.40490 1.29008 0.86395 0.75502 0.77844 0.83087 1.21328 1.24530 1.11345 0.89318 0.89851 0.93109 0.85962 0.95133 0.92311 0.90361 0.74151 0.79341 0.86709 0.83730 0.84282 0.87894 0.74639 0.94363 0.93916 0.91066 0.93367 0.93986 0.93804 0.94484 0.90438 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 8.49 71.98 0.61 -1.24 16 2 C -0.10 -1.25 2.88 -10.79 -0.03 -1.28 16 3 C -0.15 -2.51 8.76 71.98 0.63 -1.88 16 4 C 0.14 2.62 2.42 44.25 0.11 2.73 16 5 H 0.13 1.99 7.48 -2.38 -0.02 1.98 16 6 N -1.10 -22.49 4.76 -172.51 -0.82 -23.31 16 7 S 2.64 51.02 5.80 -56.49 -0.33 50.69 16 8 O -1.00 -27.25 18.08 -127.65 -2.31 -29.55 16 9 O -0.99 -24.95 16.70 -127.65 -2.13 -27.08 16 10 C -0.68 -5.51 5.17 30.59 0.16 -5.35 16 11 C -0.12 -0.54 10.17 30.60 0.31 -0.22 16 12 C -0.13 -0.77 10.30 30.60 0.32 -0.45 16 13 C 0.51 14.83 5.34 87.66 0.47 15.30 16 14 O -0.58 -21.95 15.91 -3.02 -0.05 -22.00 16 15 N -0.71 -20.34 3.98 -463.05 -1.84 -22.18 16 16 C 0.16 6.06 4.50 86.38 0.39 6.44 16 17 C 0.03 1.14 0.50 -52.93 -0.03 1.11 16 18 C -0.14 -4.99 7.54 71.98 0.54 -4.45 16 19 C -0.15 -5.44 7.51 71.98 0.54 -4.90 16 20 C -0.52 -28.28 8.62 25.60 0.22 -28.06 16 21 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 22 C 0.01 0.70 5.38 84.66 0.46 1.15 16 23 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 24 Si 0.94 41.68 22.79 68.60 1.56 43.24 16 25 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.32 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.19 -6.80 4.45 99.48 0.44 -6.36 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.79 4.98 -2.39 -0.01 0.78 16 31 H 0.12 0.65 6.06 -2.39 -0.01 0.63 16 32 H 0.03 0.70 7.00 -2.38 -0.02 0.69 16 33 H 0.06 0.95 7.64 -2.38 -0.02 0.93 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.42 9.63 7.90 -96.74 -0.76 8.87 16 36 H 0.19 0.62 7.53 -2.38 -0.02 0.60 16 37 H 0.11 0.71 7.68 -2.39 -0.02 0.70 16 38 H 0.14 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.41 9.10 4.29 -92.71 -0.40 8.70 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.82 6.73 -2.39 -0.02 1.80 16 45 H 0.05 1.80 4.19 -2.38 -0.01 1.79 16 46 H 0.04 1.52 8.13 -2.39 -0.02 1.50 16 47 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.04 1.39 2.24 -2.38 -0.01 1.39 16 49 H 0.08 2.08 6.86 -2.39 -0.02 2.06 16 50 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -84.27 386.49 -1.38 -85.65 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.46 Total: 24.59 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 4.69 Total: -21.10 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -2.36 Total: -104.43 kcal Atomic # 8 Polarization: -74.15 SS G_CDS: -4.49 Total: -78.64 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.56 Total: 43.24 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.33 Total: 50.69 kcal Total: -84.27 -1.38 -85.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.741 kcal (2) G-P(sol) polarization free energy of solvation -84.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds