Wall clock time and date at job start Sat Apr 11 2020 07:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46927 * 2 1 4 4 C 1.53000 * 109.47010 * 240.00078 * 2 1 3 5 5 C 1.52998 * 109.47339 * 120.00267 * 2 1 3 6 6 H 1.08998 * 109.47581 * 174.84272 * 5 2 1 7 7 N 1.46504 * 109.47064 * 54.84498 * 5 2 1 8 8 S 1.65601 * 119.99989 * 111.46226 * 7 5 2 9 9 C 1.81394 * 104.44891 * 64.07914 * 8 7 5 10 10 O 1.42101 * 104.27455 * 180.15249 * 8 7 5 11 11 O 1.42097 * 104.27887 * 308.00679 * 8 7 5 12 12 C 1.50700 * 109.47058 * 294.84780 * 5 2 1 13 13 O 1.21282 * 120.00264 * 92.98626 * 12 5 2 14 14 N 1.34774 * 119.99601 * 272.98401 * 12 5 2 15 15 C 1.46921 * 120.63148 * 3.15565 * 14 12 5 16 16 C 1.52761 * 109.01038 * 233.58382 * 15 14 12 17 17 C 1.53043 * 109.38303 * 305.59180 * 16 15 14 18 18 C 1.53035 * 109.54221 * 61.23717 * 17 16 15 19 19 H 1.09002 * 109.49960 * 58.58412 * 18 17 16 20 20 C 1.50697 * 109.50149 * 178.68375 * 18 17 16 21 21 H 1.08006 * 119.99904 * 119.83452 * 20 18 17 22 22 C 1.37874 * 120.00367 * 299.83915 * 20 18 17 23 23 N 1.31515 * 119.99506 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00271 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47105 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47027 * 120.00079 * 24 22 20 27 27 H 1.48497 * 109.47225 * 239.99940 * 24 22 20 28 28 C 1.46931 * 120.63082 * 183.43755 * 14 12 5 29 29 H 1.08998 * 109.47023 * 299.99486 * 1 2 3 30 30 H 1.08997 * 109.47429 * 59.99727 * 1 2 3 31 31 H 1.09008 * 109.46825 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47275 * 179.39957 * 3 2 1 33 33 H 1.08992 * 109.47730 * 299.40479 * 3 2 1 34 34 H 1.09004 * 109.47207 * 59.40375 * 3 2 1 35 35 H 1.09000 * 109.47788 * 299.42463 * 4 2 1 36 36 H 1.09008 * 109.47161 * 59.42350 * 4 2 1 37 37 H 1.08998 * 109.47304 * 179.41798 * 4 2 1 38 38 H 0.97006 * 120.00079 * 291.46001 * 7 5 2 39 39 H 1.09000 * 109.47442 * 60.00144 * 9 8 7 40 40 H 1.08998 * 109.47095 * 180.02562 * 9 8 7 41 41 H 1.08998 * 109.47720 * 299.99935 * 9 8 7 42 42 H 1.08999 * 109.58731 * 353.41873 * 15 14 12 43 43 H 1.09000 * 109.59013 * 113.84667 * 15 14 12 44 44 H 1.08997 * 109.56660 * 185.55321 * 16 15 14 45 45 H 1.09000 * 109.36407 * 65.49442 * 16 15 14 46 46 H 1.09004 * 109.46147 * 301.21373 * 17 16 15 47 47 H 1.09004 * 109.46466 * 181.26006 * 17 16 15 48 48 H 0.96999 * 119.99677 * 179.97438 * 23 22 20 49 49 H 1.08995 * 109.58276 * 246.15844 * 28 14 12 50 50 H 1.09005 * 109.58396 * 6.43707 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1261 -0.8020 1.2042 7 7 1.4530 -2.0621 1.3128 8 16 2.4100 -3.3961 1.0958 9 6 3.5655 -3.3564 2.4934 10 8 1.5152 -4.4930 1.2195 11 8 3.0936 -3.1423 -0.1238 12 6 1.6446 0.0589 2.4764 13 8 0.6126 -0.2049 3.0562 14 7 2.4379 1.0497 2.9295 15 6 3.6558 1.4268 2.1993 16 6 4.8441 1.3852 3.1584 17 6 4.5444 2.2617 4.3767 18 6 3.3131 1.7201 5.1065 19 1 3.4950 0.6895 5.4115 20 6 3.0381 2.5645 6.3240 21 1 2.0963 3.0846 6.4189 22 6 3.9887 2.6732 7.3167 23 7 5.1357 2.0404 7.2008 24 14 3.6480 3.7205 8.8255 25 1 2.2953 4.3233 8.7145 26 1 3.7128 2.8716 10.0422 27 1 4.6647 4.7987 8.9195 28 6 2.1046 1.7693 4.1664 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4425 0.0108 33 1 1.6854 1.9532 -0.8952 34 1 1.6679 1.9594 0.8846 35 1 1.6852 -1.7519 -1.2442 36 1 1.6682 -0.2134 -2.1393 37 1 3.1299 -0.7122 -1.2545 38 1 0.5038 -2.1684 1.4821 39 1 3.0070 -3.4040 3.4282 40 1 4.2418 -4.2088 2.4300 41 1 4.1426 -2.4322 2.4618 42 1 3.8233 0.7259 1.3815 43 1 3.5459 2.4358 1.8017 44 1 5.7347 1.7577 2.6525 45 1 5.0116 0.3579 3.4819 46 1 4.3526 3.2839 4.0503 47 1 5.4004 2.2508 5.0514 48 1 5.8046 2.1172 7.8990 49 1 1.8655 2.8066 3.9325 50 1 1.2473 1.2956 4.6449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:50 Heat of formation + Delta-G solvation = -109.852762 kcal Electronic energy + Delta-G solvation = -31599.069368 eV Core-core repulsion = 27560.495783 eV Total energy + Delta-G solvation = -4038.573585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.68091 -37.75362 -37.16988 -36.66811 -36.07826 -33.76823 -33.36323 -31.47922 -30.53941 -29.60657 -27.55433 -27.31482 -26.93285 -25.08723 -24.18449 -21.82379 -20.52783 -19.76328 -19.20210 -18.57637 -17.85792 -16.88453 -16.63049 -16.39537 -16.23000 -15.60050 -15.41867 -14.72855 -14.67062 -14.04649 -13.85432 -13.61780 -13.49002 -13.38513 -13.36921 -13.02156 -12.84886 -12.75827 -12.50064 -12.35971 -12.22082 -12.18017 -12.05539 -11.89918 -11.87357 -11.56705 -11.42002 -11.17566 -11.06853 -11.00706 -10.83594 -10.78964 -10.66634 -10.43219 -10.06705 -9.99727 -9.83693 -9.55730 -9.14681 -8.88578 -8.47680 -8.03397 -6.10642 -4.17676 0.11387 2.42012 2.85545 3.23136 3.30864 3.32999 3.38098 3.65109 4.04498 4.35713 4.40764 4.53235 4.54849 4.63534 4.77468 4.95825 5.00560 5.15313 5.21695 5.33264 5.42688 5.49376 5.58799 5.61624 5.64283 5.68413 5.80387 5.89205 5.92441 5.98617 6.03162 6.15958 6.21342 6.26057 6.30654 6.35922 6.38820 6.54854 6.67672 6.82593 6.85592 7.04552 7.22111 7.60039 7.78348 7.86518 7.97888 8.27283 8.45591 8.86092 9.48000 10.94914 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.003505 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.427413 B = 7986.951223 C = 8598.228713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.161 4.161 4 C -0.137 4.137 5 C 0.144 3.856 6 H 0.104 0.896 7 N -1.097 6.097 8 S 2.611 3.389 9 C -0.675 4.675 10 O -0.959 6.959 11 O -0.950 6.950 12 C 0.505 3.495 13 O -0.538 6.538 14 N -0.597 5.597 15 C 0.099 3.901 16 C -0.140 4.140 17 C -0.113 4.113 18 C 0.041 3.959 19 H 0.028 0.972 20 C -0.514 4.514 21 H 0.058 0.942 22 C 0.064 3.936 23 N -0.889 5.889 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.117 3.883 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.426 0.574 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.037 0.963 47 H 0.096 0.904 48 H 0.260 0.740 49 H 0.056 0.944 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -5.457 -15.519 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.219 4.219 4 C -0.195 4.195 5 C 0.032 3.968 6 H 0.122 0.878 7 N -0.856 5.856 8 S 2.703 3.297 9 C -0.825 4.825 10 O -0.950 6.950 11 O -0.940 6.940 12 C 0.290 3.710 13 O -0.415 6.415 14 N -0.330 5.330 15 C -0.024 4.024 16 C -0.178 4.178 17 C -0.151 4.151 18 C 0.021 3.979 19 H 0.046 0.954 20 C -0.553 4.553 21 H 0.076 0.924 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.004 4.004 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.263 0.737 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.114 0.886 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.773 -6.237 -15.828 17.104 hybrid contribution -0.010 0.882 1.704 1.919 sum -1.783 -5.355 -14.123 15.209 Atomic orbital electron populations 1.21868 0.93598 1.02259 1.02279 1.20790 0.97066 0.95460 0.93719 1.22425 1.01793 0.94739 1.02940 1.21902 1.01563 1.00631 0.95390 1.20852 0.98255 0.83408 0.94273 0.87803 1.55435 1.22648 1.17934 1.89573 1.04842 0.75399 0.72912 0.76587 1.30560 1.18238 1.11654 1.22067 1.93620 1.62220 1.51445 1.87668 1.93633 1.76071 1.84369 1.39948 1.20551 0.84400 0.80706 0.85388 1.90661 1.24369 1.67469 1.59010 1.48359 1.23696 1.34812 1.26125 1.22133 0.85238 1.00505 0.94531 1.22006 0.95906 1.01692 0.98224 1.21632 1.03132 0.95974 0.94320 1.18971 0.89458 0.97456 0.91973 0.95362 1.21098 1.01763 1.29482 1.02942 0.92413 1.24925 0.95056 0.95599 0.98166 1.69872 1.06415 1.42658 1.33809 0.86528 0.78378 0.80173 0.82880 1.19711 1.21029 1.21013 1.22039 1.00844 0.94641 0.82877 0.91805 0.92463 0.92285 0.91300 0.91969 0.91426 0.91615 0.92661 0.91918 0.73722 0.84838 0.85227 0.85336 0.90656 0.91050 0.92169 0.92535 0.94435 0.88612 0.92997 0.92531 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.94 37.16 0.30 -1.26 16 2 C -0.07 -0.72 0.62 -154.51 -0.10 -0.82 16 3 C -0.16 -1.60 6.54 37.15 0.24 -1.36 16 4 C -0.14 -1.38 7.32 37.16 0.27 -1.11 16 5 C 0.14 1.69 1.37 -69.08 -0.09 1.60 16 6 H 0.10 1.04 5.56 -51.93 -0.29 0.76 16 7 N -1.10 -12.25 4.05 -5.88 -0.02 -12.27 16 8 S 2.61 27.49 5.92 -107.50 -0.64 26.85 16 9 C -0.68 -5.98 10.84 101.05 1.10 -4.88 16 10 O -0.96 -13.14 18.08 -57.54 -1.04 -14.18 16 11 O -0.95 -11.42 15.23 -57.54 -0.88 -12.29 16 12 C 0.50 7.75 5.29 -10.99 -0.06 7.70 16 13 O -0.54 -9.92 15.11 5.56 0.08 -9.84 16 14 N -0.60 -9.54 2.39 -173.03 -0.41 -9.95 16 15 C 0.10 1.31 3.87 -3.94 -0.02 1.29 16 16 C -0.14 -2.19 6.07 -26.83 -0.16 -2.36 16 17 C -0.11 -2.32 4.96 -26.69 -0.13 -2.45 16 18 C 0.04 0.92 2.25 -91.66 -0.21 0.72 16 19 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.51 -13.24 8.56 -34.44 -0.29 -13.53 16 21 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 22 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 23 N -0.89 -23.92 11.32 55.43 0.63 -23.29 16 24 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.12 2.30 5.65 -3.71 -0.02 2.27 16 29 H 0.06 0.82 6.90 -51.93 -0.36 0.46 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.62 6.94 -51.92 -0.36 0.26 16 32 H 0.07 0.60 5.59 -51.93 -0.29 0.31 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.79 5.87 -51.93 -0.30 0.48 16 35 H 0.06 0.72 6.29 -51.93 -0.33 0.39 16 36 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.43 4.76 7.47 -34.47 -0.26 4.50 16 39 H 0.13 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.13 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.13 1.07 7.75 -51.93 -0.40 0.67 16 42 H 0.08 0.78 3.85 -51.93 -0.20 0.58 16 43 H 0.07 0.88 7.31 -51.93 -0.38 0.50 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 2.29 6.05 -51.93 -0.31 1.97 16 48 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.08 1.70 7.02 -51.93 -0.36 1.33 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -31.93 381.76 -8.86 -40.78 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.04 Total: 5.64 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 0.73 Total: -12.60 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.19 Total: -45.51 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.83 Total: -36.31 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 27.49 SS G_CDS: -0.64 Total: 26.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.93 -8.86 -40.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.069 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds