Wall clock time and date at job start Sat Apr 11 2020 07:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46927 * 2 1 4 4 C 1.53000 * 109.47010 * 240.00078 * 2 1 3 5 5 C 1.52998 * 109.47339 * 120.00267 * 2 1 3 6 6 H 1.08998 * 109.47581 * 174.84272 * 5 2 1 7 7 N 1.46504 * 109.47064 * 54.84498 * 5 2 1 8 8 S 1.65601 * 119.99989 * 111.46226 * 7 5 2 9 9 C 1.81394 * 104.44891 * 64.07914 * 8 7 5 10 10 O 1.42101 * 104.27455 * 180.15249 * 8 7 5 11 11 O 1.42097 * 104.27887 * 308.00679 * 8 7 5 12 12 C 1.50700 * 109.47058 * 294.84780 * 5 2 1 13 13 O 1.21282 * 120.00264 * 92.98626 * 12 5 2 14 14 N 1.34774 * 119.99601 * 272.98401 * 12 5 2 15 15 C 1.46921 * 120.63148 * 3.15565 * 14 12 5 16 16 C 1.52761 * 109.01038 * 233.58382 * 15 14 12 17 17 C 1.53043 * 109.38303 * 305.59180 * 16 15 14 18 18 C 1.53035 * 109.54221 * 61.23717 * 17 16 15 19 19 H 1.09002 * 109.49960 * 58.58412 * 18 17 16 20 20 C 1.50697 * 109.50149 * 178.68375 * 18 17 16 21 21 H 1.08006 * 119.99904 * 119.83452 * 20 18 17 22 22 C 1.37874 * 120.00367 * 299.83915 * 20 18 17 23 23 N 1.31515 * 119.99506 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00271 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47105 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47027 * 120.00079 * 24 22 20 27 27 H 1.48497 * 109.47225 * 239.99940 * 24 22 20 28 28 C 1.46931 * 120.63082 * 183.43755 * 14 12 5 29 29 H 1.08998 * 109.47023 * 299.99486 * 1 2 3 30 30 H 1.08997 * 109.47429 * 59.99727 * 1 2 3 31 31 H 1.09008 * 109.46825 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47275 * 179.39957 * 3 2 1 33 33 H 1.08992 * 109.47730 * 299.40479 * 3 2 1 34 34 H 1.09004 * 109.47207 * 59.40375 * 3 2 1 35 35 H 1.09000 * 109.47788 * 299.42463 * 4 2 1 36 36 H 1.09008 * 109.47161 * 59.42350 * 4 2 1 37 37 H 1.08998 * 109.47304 * 179.41798 * 4 2 1 38 38 H 0.97006 * 120.00079 * 291.46001 * 7 5 2 39 39 H 1.09000 * 109.47442 * 60.00144 * 9 8 7 40 40 H 1.08998 * 109.47095 * 180.02562 * 9 8 7 41 41 H 1.08998 * 109.47720 * 299.99935 * 9 8 7 42 42 H 1.08999 * 109.58731 * 353.41873 * 15 14 12 43 43 H 1.09000 * 109.59013 * 113.84667 * 15 14 12 44 44 H 1.08997 * 109.56660 * 185.55321 * 16 15 14 45 45 H 1.09000 * 109.36407 * 65.49442 * 16 15 14 46 46 H 1.09004 * 109.46147 * 301.21373 * 17 16 15 47 47 H 1.09004 * 109.46466 * 181.26006 * 17 16 15 48 48 H 0.96999 * 119.99677 * 179.97438 * 23 22 20 49 49 H 1.08995 * 109.58276 * 246.15844 * 28 14 12 50 50 H 1.09005 * 109.58396 * 6.43707 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1261 -0.8020 1.2042 7 7 1.4530 -2.0621 1.3128 8 16 2.4100 -3.3961 1.0958 9 6 3.5655 -3.3564 2.4934 10 8 1.5152 -4.4930 1.2195 11 8 3.0936 -3.1423 -0.1238 12 6 1.6446 0.0589 2.4764 13 8 0.6126 -0.2049 3.0562 14 7 2.4379 1.0497 2.9295 15 6 3.6558 1.4268 2.1993 16 6 4.8441 1.3852 3.1584 17 6 4.5444 2.2617 4.3767 18 6 3.3131 1.7201 5.1065 19 1 3.4950 0.6895 5.4115 20 6 3.0381 2.5645 6.3240 21 1 2.0963 3.0846 6.4189 22 6 3.9887 2.6732 7.3167 23 7 5.1357 2.0404 7.2008 24 14 3.6480 3.7205 8.8255 25 1 2.2953 4.3233 8.7145 26 1 3.7128 2.8716 10.0422 27 1 4.6647 4.7987 8.9195 28 6 2.1046 1.7693 4.1664 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4425 0.0108 33 1 1.6854 1.9532 -0.8952 34 1 1.6679 1.9594 0.8846 35 1 1.6852 -1.7519 -1.2442 36 1 1.6682 -0.2134 -2.1393 37 1 3.1299 -0.7122 -1.2545 38 1 0.5038 -2.1684 1.4821 39 1 3.0070 -3.4040 3.4282 40 1 4.2418 -4.2088 2.4300 41 1 4.1426 -2.4322 2.4618 42 1 3.8233 0.7259 1.3815 43 1 3.5459 2.4358 1.8017 44 1 5.7347 1.7577 2.6525 45 1 5.0116 0.3579 3.4819 46 1 4.3526 3.2839 4.0503 47 1 5.4004 2.2508 5.0514 48 1 5.8046 2.1172 7.8990 49 1 1.8655 2.8066 3.9325 50 1 1.2473 1.2956 4.6449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:49 Heat of formation + Delta-G solvation = -132.208312 kcal Electronic energy + Delta-G solvation = -31600.038777 eV Core-core repulsion = 27560.495783 eV Total energy + Delta-G solvation = -4039.542995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.83581 -38.95919 -38.21246 -37.84347 -37.00719 -35.40275 -34.35427 -33.03313 -32.09747 -30.34618 -28.66614 -28.15562 -27.83645 -26.79271 -25.53413 -23.31130 -21.86368 -20.72102 -20.31351 -19.67617 -18.95559 -18.34492 -17.81610 -17.63465 -17.24498 -16.77321 -16.45631 -16.43089 -15.80994 -15.13099 -15.06446 -14.97681 -14.68171 -14.42055 -14.29286 -14.11503 -14.07053 -13.82589 -13.72865 -13.53484 -13.31072 -13.17027 -13.13573 -12.89987 -12.87898 -12.76364 -12.59740 -12.56522 -12.37563 -12.30960 -12.04957 -11.90947 -11.83765 -11.66922 -11.63087 -11.41807 -11.26487 -10.95674 -10.74786 -10.42089 -10.21084 -9.45050 -8.10208 -6.24030 -0.72552 1.39242 1.42500 1.45924 1.52992 1.72573 2.12993 2.44239 2.80224 3.17162 3.21027 3.39986 3.56592 3.67569 3.90049 4.02735 4.10916 4.16154 4.18146 4.26969 4.37915 4.50611 4.55445 4.58818 4.68840 4.83381 4.85105 4.89871 4.90971 4.92033 4.98675 5.01737 5.11288 5.15091 5.15836 5.22498 5.31998 5.37894 5.48481 5.52138 5.58593 5.62410 5.64097 5.93062 5.96805 6.17300 6.37420 6.56519 6.85844 7.20255 7.44195 8.93185 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.003505 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.427413 B = 7986.951223 C = 8598.228713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.162 4.162 4 C -0.135 4.135 5 C 0.147 3.853 6 H 0.128 0.872 7 N -1.100 6.100 8 S 2.628 3.372 9 C -0.672 4.672 10 O -0.993 6.993 11 O -0.961 6.961 12 C 0.504 3.496 13 O -0.574 6.574 14 N -0.599 5.599 15 C 0.098 3.902 16 C -0.134 4.134 17 C -0.106 4.106 18 C 0.042 3.958 19 H -0.009 1.009 20 C -0.535 4.535 21 H 0.050 0.950 22 C 0.020 3.980 23 N -0.911 5.911 24 Si 0.949 3.051 25 H -0.270 1.270 26 H -0.284 1.284 27 H -0.277 1.277 28 C 0.132 3.868 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.424 0.576 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.140 0.860 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.036 0.964 47 H 0.061 0.939 48 H 0.260 0.740 49 H 0.060 0.940 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -5.103 -17.587 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.220 4.220 4 C -0.192 4.192 5 C 0.035 3.965 6 H 0.146 0.854 7 N -0.858 5.858 8 S 2.722 3.278 9 C -0.824 4.824 10 O -0.984 6.984 11 O -0.951 6.951 12 C 0.291 3.709 13 O -0.454 6.454 14 N -0.331 5.331 15 C -0.023 4.023 16 C -0.172 4.172 17 C -0.144 4.144 18 C 0.023 3.977 19 H 0.009 0.991 20 C -0.574 4.574 21 H 0.068 0.932 22 C -0.179 4.179 23 N -0.550 5.550 24 Si 0.775 3.225 25 H -0.195 1.195 26 H -0.211 1.211 27 H -0.203 1.203 28 C 0.009 3.991 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.261 0.739 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.158 0.842 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.638 -5.882 -17.938 18.888 hybrid contribution -0.380 0.755 2.392 2.537 sum -1.018 -5.127 -15.546 16.401 Atomic orbital electron populations 1.21858 0.94211 1.02098 1.01760 1.20822 0.96631 0.96062 0.93255 1.22444 1.02890 0.93813 1.02833 1.21882 1.02005 0.99976 0.95347 1.20958 0.99609 0.83173 0.92737 0.85425 1.55449 1.22816 1.17868 1.89622 1.04265 0.74945 0.71929 0.76631 1.30517 1.18023 1.13449 1.20377 1.93577 1.63715 1.52808 1.88267 1.93609 1.76032 1.84327 1.41181 1.21221 0.83598 0.80120 0.85960 1.90645 1.26042 1.68307 1.60371 1.48339 1.24902 1.34800 1.25036 1.22404 0.82723 1.02800 0.94409 1.21938 0.98319 1.00229 0.96696 1.21419 1.00331 0.96982 0.95711 1.18871 0.91935 0.94694 0.92231 0.99131 1.21469 1.01470 1.29845 1.04599 0.93191 1.25597 0.94979 0.96710 1.00612 1.69996 1.06960 1.43600 1.34463 0.85645 0.78314 0.78812 0.79705 1.19476 1.21056 1.20302 1.21538 0.98425 0.95018 0.84107 0.94261 0.90954 0.92362 0.89494 0.90436 0.93312 0.92731 0.91197 0.91153 0.73922 0.85142 0.82866 0.84190 0.86800 0.89175 0.89038 0.93100 0.94484 0.92082 0.93028 0.92214 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 7.94 71.98 0.57 -2.34 16 2 C -0.07 -1.22 0.62 -52.18 -0.03 -1.25 16 3 C -0.16 -2.65 6.54 71.98 0.47 -2.18 16 4 C -0.13 -2.26 7.32 71.98 0.53 -1.73 16 5 C 0.15 3.16 1.37 44.24 0.06 3.22 16 6 H 0.13 2.09 5.56 -2.39 -0.01 2.08 16 7 N -1.10 -23.35 4.05 -172.52 -0.70 -24.05 16 8 S 2.63 51.49 5.92 -56.49 -0.33 51.16 16 9 C -0.67 -10.43 10.84 113.37 1.23 -9.20 16 10 O -0.99 -26.72 18.08 -127.65 -2.31 -29.03 16 11 O -0.96 -20.88 15.23 -127.65 -1.94 -22.82 16 12 C 0.50 15.13 5.29 87.66 0.46 15.59 16 13 O -0.57 -21.62 15.11 -3.04 -0.05 -21.66 16 14 N -0.60 -18.54 2.39 -819.74 -1.96 -20.51 16 15 C 0.10 2.29 3.87 86.22 0.33 2.62 16 16 C -0.13 -3.88 6.07 30.53 0.19 -3.70 16 17 C -0.11 -4.37 4.96 30.62 0.15 -4.22 16 18 C 0.04 1.96 2.25 -11.46 -0.03 1.94 16 19 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 20 C -0.54 -28.38 8.56 25.60 0.22 -28.16 16 21 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 22 C 0.02 1.08 5.30 84.65 0.45 1.53 16 23 N -0.91 -50.06 11.32 21.45 0.24 -49.81 16 24 Si 0.95 42.43 29.54 68.60 2.03 44.46 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 27 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 28 C 0.13 5.28 5.65 86.36 0.49 5.77 16 29 H 0.04 1.00 6.90 -2.39 -0.02 0.98 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.18 6.94 -2.38 -0.02 1.16 16 32 H 0.09 1.09 5.59 -2.39 -0.01 1.07 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.01 5.87 -2.38 -0.01 0.99 16 35 H 0.05 1.06 6.29 -2.39 -0.02 1.04 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 38 H 0.42 9.44 7.47 -96.74 -0.72 8.72 16 39 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.15 1.67 8.14 -2.39 -0.02 1.66 16 41 H 0.14 1.90 7.75 -2.39 -0.02 1.89 16 42 H 0.11 1.82 3.85 -2.39 -0.01 1.81 16 43 H 0.09 1.86 7.31 -2.39 -0.02 1.84 16 44 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 2.96 6.05 -2.39 -0.01 2.94 16 48 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 49 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.05 2.41 7.02 -2.38 -0.02 2.39 16 Total: -1.00 -71.70 381.76 0.29 -71.41 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.23 Total: 22.97 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 5.09 Total: -22.11 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -2.42 Total: -94.37 kcal Atomic # 8 Polarization: -69.22 SS G_CDS: -4.30 Total: -73.51 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 51.49 SS G_CDS: -0.33 Total: 51.16 kcal Total: -71.70 0.29 -71.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.802 kcal (2) G-P(sol) polarization free energy of solvation -71.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds