Wall clock time and date at job start Sat Apr 11 2020 07:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47202 * 2 1 4 4 C 1.53011 * 109.46980 * 239.99775 * 2 1 3 5 5 C 1.52995 * 109.47363 * 120.00325 * 2 1 3 6 6 H 1.08994 * 109.47469 * 174.46442 * 5 2 1 7 7 N 1.46502 * 109.46933 * 294.46465 * 5 2 1 8 8 S 1.65598 * 120.00215 * 200.45468 * 7 5 2 9 9 C 1.81399 * 104.45071 * 65.67644 * 8 7 5 10 10 O 1.42103 * 104.27996 * 181.75033 * 8 7 5 11 11 O 1.42109 * 104.27615 * 309.60730 * 8 7 5 12 12 C 1.50702 * 109.47308 * 54.46299 * 5 2 1 13 13 O 1.21281 * 120.00162 * 294.54594 * 12 5 2 14 14 N 1.34772 * 119.99992 * 114.55208 * 12 5 2 15 15 C 1.46930 * 120.63051 * 353.95473 * 14 12 5 16 16 C 1.53185 * 108.89540 * 233.56310 * 15 14 12 17 17 C 1.53075 * 109.29877 * 305.57965 * 16 15 14 18 18 C 1.53045 * 109.65596 * 61.15322 * 17 16 15 19 19 H 1.09002 * 109.49897 * 58.65285 * 18 17 16 20 20 C 1.50703 * 109.49634 * 178.74949 * 18 17 16 21 21 H 1.08002 * 119.99963 * 119.84011 * 20 18 17 22 22 C 1.37876 * 119.99767 * 299.83677 * 20 18 17 23 23 N 1.31514 * 120.00580 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 119.99581 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47198 * 59.99933 * 24 22 20 26 26 H 1.48499 * 109.47166 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47099 * 300.00219 * 24 22 20 28 28 C 1.46926 * 120.63018 * 173.98786 * 14 12 5 29 29 H 1.09000 * 109.46894 * 299.99793 * 1 2 3 30 30 H 1.08996 * 109.47021 * 60.00131 * 1 2 3 31 31 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47647 * 188.19734 * 3 2 1 33 33 H 1.09010 * 109.47279 * 308.19176 * 3 2 1 34 34 H 1.08996 * 109.47580 * 68.19490 * 3 2 1 35 35 H 1.08997 * 109.47221 * 292.37967 * 4 2 1 36 36 H 1.09001 * 109.46574 * 52.37371 * 4 2 1 37 37 H 1.08994 * 109.46810 * 172.37171 * 4 2 1 38 38 H 0.97004 * 119.99908 * 20.45056 * 7 5 2 39 39 H 1.09006 * 109.46968 * 46.20764 * 9 8 7 40 40 H 1.09001 * 109.47340 * 166.20887 * 9 8 7 41 41 H 1.08995 * 109.47166 * 286.21146 * 9 8 7 42 42 H 1.08998 * 109.58477 * 353.42549 * 15 14 12 43 43 H 1.09002 * 109.57899 * 113.70564 * 15 14 12 44 44 H 1.09001 * 109.49686 * 65.39263 * 16 15 14 45 45 H 1.09001 * 109.50207 * 185.48691 * 16 15 14 46 46 H 1.08996 * 109.34685 * 301.12881 * 17 16 15 47 47 H 1.08998 * 109.45339 * 181.24027 * 17 16 15 48 48 H 0.96991 * 120.00043 * 180.02562 * 23 22 20 49 49 H 1.09007 * 109.58661 * 246.15024 * 28 14 12 50 50 H 1.09001 * 109.58834 * 6.43405 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 3.1255 -0.8079 1.2010 7 7 1.6635 0.0419 2.4416 8 16 2.4780 -0.1903 3.8647 9 6 4.1592 0.4006 3.5256 10 8 1.8237 0.6699 4.7874 11 8 2.4719 -1.5997 4.0460 12 6 1.4290 -2.0970 1.3196 13 8 0.2332 -2.2220 1.4794 14 7 2.2112 -3.1885 1.2051 15 6 3.6380 -3.0562 0.8800 16 6 3.9522 -3.9299 -0.3384 17 6 3.4979 -5.3653 -0.0624 18 6 1.9865 -5.3900 0.1767 19 1 1.4733 -4.9894 -0.6976 20 6 1.5384 -6.8086 0.4177 21 1 1.0636 -7.0738 1.3507 22 6 1.7347 -7.7678 -0.5531 23 7 2.3123 -7.4447 -1.6896 24 14 1.1786 -9.5260 -0.2547 25 1 -0.2874 -9.5483 -0.0193 26 1 1.5025 -10.3560 -1.4427 27 1 1.8793 -10.0714 0.9355 28 6 1.6533 -4.5334 1.4023 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1201 1.4460 -0.1465 33 1 1.5620 1.9969 -0.8077 34 1 1.8013 1.9123 0.9541 35 1 1.7922 -1.7808 -1.1838 36 1 1.5695 -0.2923 -2.1340 37 1 3.1214 -0.6047 -1.3201 38 1 0.9372 0.6833 2.3976 39 1 4.1102 1.3622 3.0146 40 1 4.7003 0.5154 4.4648 41 1 4.6773 -0.3206 2.8937 42 1 3.8657 -2.0151 0.6517 43 1 4.2380 -3.3838 1.7291 44 1 3.4225 -3.5438 -1.2093 45 1 5.0253 -3.9159 -0.5291 46 1 4.0116 -5.7430 0.8217 47 1 3.7403 -5.9939 -0.9192 48 1 2.4500 -8.1195 -2.3726 49 1 2.0915 -4.9838 2.2929 50 1 0.5718 -4.4666 1.5210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:52 Heat of formation + Delta-G solvation = -136.242133 kcal Electronic energy + Delta-G solvation = -31702.519903 eV Core-core repulsion = 27662.801988 eV Total energy + Delta-G solvation = -4039.717914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.68517 -39.03910 -38.13964 -37.70601 -36.99303 -35.35736 -34.42169 -32.99544 -32.03728 -30.27733 -28.70257 -28.07180 -27.65273 -26.86691 -25.64311 -23.32424 -21.90659 -20.61210 -20.29070 -19.59832 -18.86290 -18.47050 -18.02128 -17.74948 -17.15050 -16.63506 -16.44655 -16.32479 -15.49330 -15.19872 -15.07586 -15.04790 -14.71705 -14.43403 -14.22252 -14.12913 -13.92579 -13.83746 -13.65668 -13.53185 -13.30692 -13.16700 -13.06626 -12.96644 -12.87146 -12.79896 -12.64243 -12.59409 -12.45533 -12.07004 -12.02131 -11.89963 -11.82590 -11.69223 -11.53461 -11.43508 -11.33583 -11.17209 -10.81000 -10.42230 -10.03280 -9.35075 -8.09903 -6.24405 -0.71294 1.40260 1.41556 1.48047 1.49153 1.89915 2.17442 2.44279 2.87179 3.16057 3.27059 3.46881 3.54362 3.64092 3.92730 4.11091 4.15461 4.19219 4.26671 4.30673 4.40948 4.44142 4.57415 4.61533 4.66870 4.82233 4.84566 4.89575 4.90934 4.97712 4.98876 5.01519 5.08318 5.13946 5.18030 5.21917 5.33949 5.39166 5.50534 5.51928 5.57025 5.62928 5.65765 5.96712 5.97341 6.16728 6.37724 6.67389 6.83933 7.32740 7.42986 8.93229 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.003634 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.026847 B = 7703.456407 C = 8318.357112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.056 4.056 3 C -0.138 4.138 4 C -0.151 4.151 5 C 0.148 3.852 6 H 0.134 0.866 7 N -1.095 6.095 8 S 2.589 3.411 9 C -0.643 4.643 10 O -0.998 6.998 11 O -0.996 6.996 12 C 0.493 3.507 13 O -0.581 6.581 14 N -0.598 5.598 15 C 0.097 3.903 16 C -0.125 4.125 17 C -0.106 4.106 18 C 0.046 3.954 19 H -0.011 1.011 20 C -0.542 4.542 21 H 0.045 0.955 22 C 0.022 3.978 23 N -0.909 5.909 24 Si 0.951 3.049 25 H -0.279 1.279 26 H -0.279 1.279 27 H -0.270 1.270 28 C 0.133 3.867 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.425 0.575 39 H 0.168 0.832 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.032 0.968 47 H 0.064 0.936 48 H 0.262 0.738 49 H 0.049 0.951 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.497 23.256 2.796 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.209 4.209 5 C 0.037 3.963 6 H 0.152 0.848 7 N -0.855 5.855 8 S 2.687 3.313 9 C -0.798 4.798 10 O -0.988 6.988 11 O -0.986 6.986 12 C 0.281 3.719 13 O -0.460 6.460 14 N -0.330 5.330 15 C -0.025 4.025 16 C -0.163 4.163 17 C -0.144 4.144 18 C 0.027 3.973 19 H 0.007 0.993 20 C -0.580 4.580 21 H 0.063 0.937 22 C -0.178 4.178 23 N -0.548 5.548 24 Si 0.777 3.223 25 H -0.204 1.204 26 H -0.204 1.204 27 H -0.195 1.195 28 C 0.010 3.990 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.262 0.738 39 H 0.186 0.814 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.136 0.864 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.114 0.886 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.681 22.608 3.550 24.848 hybrid contribution -1.006 -1.405 -0.233 1.744 sum 8.675 21.203 3.316 23.148 Atomic orbital electron populations 1.22043 0.94994 1.02047 1.01786 1.20662 0.95989 0.97630 0.91549 1.21929 1.02738 0.91466 1.03398 1.22022 1.03074 0.98914 0.96854 1.21103 1.00942 0.86360 0.87921 0.84839 1.55405 1.50370 1.53775 1.25932 1.05270 0.79481 0.73852 0.72725 1.30314 1.19222 1.15568 1.14663 1.93564 1.74891 1.68959 1.61401 1.93650 1.87758 1.32520 1.84688 1.21718 0.86853 0.87728 0.75635 1.90587 1.17027 1.87321 1.51096 1.48243 1.10954 1.05774 1.68023 1.22179 0.79898 1.01993 0.98387 1.21917 1.01898 0.95316 0.97134 1.21420 0.96176 0.96022 1.00787 1.18825 0.94311 0.92680 0.91464 0.99311 1.21411 1.39503 0.95279 1.01823 0.93699 1.25605 0.95024 1.02352 0.94784 1.69977 1.43405 1.34889 1.06526 0.85727 0.78609 0.80177 0.77814 1.20447 1.20368 1.19513 1.21441 0.97231 0.81774 0.98555 0.92490 0.91417 0.94223 0.89556 0.91182 0.90998 0.95489 0.90896 0.89047 0.73765 0.81433 0.83118 0.82822 0.86420 0.90212 0.92879 0.88616 0.94884 0.91750 0.92874 0.93272 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 7.63 71.98 0.55 -3.10 16 2 C -0.06 -1.02 0.57 -52.18 -0.03 -1.05 16 3 C -0.14 -1.25 8.40 71.98 0.60 -0.64 16 4 C -0.15 -2.88 8.42 71.99 0.61 -2.27 16 5 C 0.15 3.15 1.55 44.24 0.07 3.22 16 6 H 0.13 1.73 4.81 -2.39 -0.01 1.72 16 7 N -1.10 -21.09 4.57 -172.53 -0.79 -21.88 16 8 S 2.59 51.33 6.09 -56.49 -0.34 50.98 16 9 C -0.64 -3.48 10.62 113.37 1.20 -2.28 16 10 O -1.00 -26.42 18.08 -127.65 -2.31 -28.73 16 11 O -1.00 -30.95 16.89 -127.65 -2.16 -33.10 16 12 C 0.49 17.46 4.33 87.66 0.38 17.84 16 13 O -0.58 -26.01 13.62 -3.03 -0.04 -26.05 16 14 N -0.60 -22.24 2.97 -818.90 -2.44 -24.67 16 15 C 0.10 2.61 6.24 86.36 0.54 3.15 16 16 C -0.12 -3.94 6.09 30.68 0.19 -3.75 16 17 C -0.11 -4.74 4.96 30.63 0.15 -4.59 16 18 C 0.05 2.40 2.25 -11.46 -0.03 2.38 16 19 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 20 C -0.54 -31.12 8.56 25.60 0.22 -30.90 16 21 H 0.04 2.60 7.74 -2.91 -0.02 2.57 16 22 C 0.02 1.23 5.30 84.65 0.45 1.67 16 23 N -0.91 -52.11 11.32 21.45 0.24 -51.87 16 24 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 28 C 0.13 6.32 5.67 86.36 0.49 6.81 16 29 H 0.06 1.28 6.85 -2.39 -0.02 1.27 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.34 5.65 -2.39 -0.01 1.33 16 32 H 0.09 0.36 8.09 -2.39 -0.02 0.34 16 33 H 0.07 0.60 8.13 -2.38 -0.02 0.58 16 34 H 0.07 0.51 6.75 -2.39 -0.02 0.49 16 35 H 0.03 0.74 7.18 -2.39 -0.02 0.72 16 36 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 37 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 38 H 0.42 7.35 6.61 -96.74 -0.64 6.71 16 39 H 0.17 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.15 0.30 7.96 -2.39 -0.02 0.28 16 42 H 0.12 1.89 5.27 -2.39 -0.01 1.88 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.06 3.29 6.05 -2.39 -0.01 3.27 16 48 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 49 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 50 H 0.04 2.34 7.00 -2.39 -0.02 2.32 16 Total: -1.00 -87.80 390.92 -0.11 -87.92 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.30 Total: 14.26 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.39 Total: -13.52 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -2.98 Total: -98.41 kcal Atomic # 8 Polarization: -83.37 SS G_CDS: -4.51 Total: -87.88 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 51.33 SS G_CDS: -0.34 Total: 50.98 kcal Total: -87.80 -0.11 -87.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.325 kcal (2) G-P(sol) polarization free energy of solvation -87.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds