Wall clock time and date at job start Sat Apr 11 2020 07:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46932 * 2 1 4 4 C 1.52999 * 109.47089 * 239.99540 * 2 1 3 5 5 C 1.52999 * 109.46866 * 119.99708 * 2 1 3 6 6 H 1.09004 * 109.46954 * 301.70404 * 5 2 1 7 7 N 1.46504 * 109.47134 * 181.70363 * 5 2 1 8 8 S 1.65598 * 120.00159 * 146.71428 * 7 5 2 9 9 C 1.81400 * 104.44790 * 62.88357 * 8 7 5 10 10 O 1.42100 * 104.27842 * 178.95436 * 8 7 5 11 11 O 1.42100 * 104.27821 * 306.81086 * 8 7 5 12 12 C 1.50697 * 109.47418 * 61.70329 * 5 2 1 13 13 O 1.21275 * 120.00056 * 86.24481 * 12 5 2 14 14 N 1.34782 * 119.99965 * 266.24540 * 12 5 2 15 15 C 1.46920 * 120.63093 * 355.13829 * 14 12 5 16 16 C 1.53193 * 108.77571 * 126.37139 * 15 14 12 17 17 C 1.53033 * 109.31208 * 54.63594 * 16 15 14 18 18 C 1.53040 * 109.53898 * 298.63252 * 17 16 15 19 19 H 1.08997 * 109.50088 * 301.41466 * 18 17 16 20 20 C 1.50703 * 109.50006 * 181.35116 * 18 17 16 21 21 H 1.08004 * 119.99761 * 240.06747 * 20 18 17 22 22 C 1.37876 * 120.00111 * 60.06499 * 20 18 17 23 23 N 1.31512 * 119.99564 * 0.02562 * 22 20 18 24 24 Si 1.86793 * 120.00068 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47079 * 90.00354 * 24 22 20 26 26 H 1.48503 * 109.47338 * 210.00054 * 24 22 20 27 27 H 1.48501 * 109.47445 * 330.00483 * 24 22 20 28 28 C 1.46992 * 120.61278 * 175.11789 * 14 12 5 29 29 H 1.08999 * 109.47468 * 303.70319 * 1 2 3 30 30 H 1.09000 * 109.46970 * 63.70523 * 1 2 3 31 31 H 1.09005 * 109.47069 * 183.70417 * 1 2 3 32 32 H 1.09001 * 109.46924 * 186.13589 * 3 2 1 33 33 H 1.09001 * 109.46585 * 306.12917 * 3 2 1 34 34 H 1.08991 * 109.47737 * 66.13421 * 3 2 1 35 35 H 1.09003 * 109.47039 * 299.99956 * 4 2 1 36 36 H 1.08997 * 109.46877 * 59.99955 * 4 2 1 37 37 H 1.08999 * 109.46747 * 180.02562 * 4 2 1 38 38 H 0.96998 * 119.99411 * 326.71258 * 7 5 2 39 39 H 1.08997 * 109.47291 * 60.00157 * 9 8 7 40 40 H 1.09008 * 109.46714 * 180.02562 * 9 8 7 41 41 H 1.09003 * 109.47455 * 299.99473 * 9 8 7 42 42 H 1.08998 * 109.58786 * 6.57806 * 15 14 12 43 43 H 1.09002 * 109.58430 * 246.15909 * 15 14 12 44 44 H 1.08995 * 109.49451 * 294.68022 * 16 15 14 45 45 H 1.09003 * 109.49588 * 174.58662 * 16 15 14 46 46 H 1.09000 * 109.46076 * 178.61683 * 17 16 15 47 47 H 1.08995 * 109.45407 * 58.64577 * 17 16 15 48 48 H 0.97001 * 119.99940 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58551 * 113.84730 * 28 14 12 50 50 H 1.09001 * 109.62970 * 353.39919 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6518 -0.2252 2.1390 7 7 3.5044 -0.6858 1.2701 8 16 4.3102 -0.5979 2.7141 9 6 3.8679 -2.1331 3.5733 10 8 5.6838 -0.6082 2.3502 11 8 3.7342 0.5239 3.3692 12 6 1.5724 -2.1537 1.2285 13 8 2.2224 -2.9953 0.6455 14 7 0.4318 -2.4995 1.8578 15 6 -0.3105 -1.5149 2.6567 16 6 -1.7622 -1.4779 2.1689 17 6 -2.3468 -2.8915 2.2121 18 6 -1.5473 -3.8047 1.2800 19 1 -1.5800 -3.4076 0.2654 20 6 -2.1440 -5.1885 1.2978 21 1 -1.5467 -6.0301 1.6163 22 6 -3.4524 -5.3801 0.9075 23 7 -4.1795 -4.3553 0.5192 24 14 -4.1918 -7.0953 0.9290 25 1 -4.8106 -7.3510 2.2545 26 1 -5.2280 -7.2010 -0.1296 27 1 -3.1249 -8.0975 0.6792 28 6 -0.0930 -3.8688 1.7573 29 1 -0.3634 0.5702 0.8549 30 1 -0.3633 0.4552 -0.9213 31 1 -0.3633 -1.0256 0.0664 32 1 3.1244 1.4445 -0.1098 33 1 1.5897 1.9869 -0.8301 34 1 1.7691 1.9237 0.9397 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 4.0020 -0.7138 0.4379 39 1 4.1901 -2.9880 2.9789 40 1 4.3599 -2.1600 4.5457 41 1 2.7875 -2.1736 3.7121 42 1 0.1411 -0.5304 2.5350 43 1 -0.2853 -1.8033 3.7075 44 1 -1.7929 -1.1026 1.1461 45 1 -2.3465 -0.8227 2.8151 46 1 -3.3874 -2.8642 1.8889 47 1 -2.2929 -3.2757 3.2307 48 1 -5.1001 -4.4900 0.2450 49 1 -0.0501 -4.3492 2.7348 50 1 0.5016 -4.4373 1.0422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:56 Heat of formation + Delta-G solvation = -112.808551 kcal Electronic energy + Delta-G solvation = -31767.523347 eV Core-core repulsion = 27728.821589 eV Total energy + Delta-G solvation = -4038.701758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66150 -37.70262 -37.22946 -36.67890 -36.12126 -33.63031 -33.49053 -31.46646 -30.51044 -29.60269 -27.59399 -27.29334 -26.74132 -25.15397 -24.24711 -21.81054 -20.62165 -19.65467 -19.23068 -18.44793 -17.95317 -17.09426 -16.78750 -16.35194 -16.19780 -15.47895 -15.27340 -14.73253 -14.51598 -14.25889 -13.89592 -13.56076 -13.47972 -13.40412 -13.31414 -13.20356 -12.84946 -12.68782 -12.38116 -12.28536 -12.22525 -12.18664 -12.11060 -12.08119 -11.90650 -11.61283 -11.27873 -11.05135 -11.03511 -10.96996 -10.91011 -10.78254 -10.65351 -10.45840 -10.26014 -10.01978 -9.86331 -9.52153 -9.09464 -8.84749 -8.46275 -8.03733 -6.09530 -4.16724 0.09715 2.38147 2.78723 3.24295 3.31284 3.32706 3.37514 3.61433 4.02176 4.36143 4.43806 4.52619 4.59446 4.61653 4.76470 4.93403 5.08156 5.19543 5.25838 5.27454 5.42740 5.50966 5.57721 5.61446 5.67472 5.71023 5.81472 5.89163 5.95658 6.00194 6.05436 6.14762 6.22193 6.26604 6.36999 6.38038 6.40281 6.56738 6.69968 6.80169 6.82329 7.06710 7.23477 7.60871 7.77742 7.86829 7.98974 8.27825 8.43505 8.86525 9.48767 10.95819 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.003502 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.229973 B = 7993.568058 C = 8538.569018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.146 4.146 5 C 0.135 3.865 6 H 0.111 0.889 7 N -1.094 6.094 8 S 2.611 3.389 9 C -0.671 4.671 10 O -0.959 6.959 11 O -0.956 6.956 12 C 0.490 3.510 13 O -0.534 6.534 14 N -0.598 5.598 15 C 0.096 3.904 16 C -0.141 4.141 17 C -0.113 4.113 18 C 0.042 3.958 19 H 0.030 0.970 20 C -0.516 4.516 21 H 0.056 0.944 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.116 3.884 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.422 0.578 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.096 0.904 47 H 0.035 0.965 48 H 0.261 0.739 49 H 0.056 0.944 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.902 10.943 3.201 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.060 4.060 3 C -0.196 4.196 4 C -0.203 4.203 5 C 0.023 3.977 6 H 0.128 0.872 7 N -0.853 5.853 8 S 2.703 3.297 9 C -0.822 4.822 10 O -0.950 6.950 11 O -0.946 6.946 12 C 0.275 3.725 13 O -0.412 6.412 14 N -0.331 5.331 15 C -0.027 4.027 16 C -0.179 4.179 17 C -0.151 4.151 18 C 0.023 3.977 19 H 0.048 0.952 20 C -0.555 4.555 21 H 0.074 0.926 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.005 4.005 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.259 0.741 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.543 11.231 3.295 16.439 hybrid contribution -0.803 -1.670 -0.188 1.863 sum 10.740 9.561 3.107 14.711 Atomic orbital electron populations 1.22311 0.92804 1.04039 1.02576 1.20607 0.96666 0.95547 0.93182 1.21861 1.01253 0.94163 1.02336 1.21935 1.00822 1.01496 0.96037 1.21070 0.80409 0.93848 1.02354 0.87162 1.55379 1.13631 1.91224 1.25081 1.04788 0.73787 0.76886 0.74233 1.30529 1.12741 1.23977 1.14918 1.93613 1.32068 1.87688 1.81598 1.93616 1.78940 1.46665 1.75370 1.20957 0.81449 0.90531 0.79593 1.90660 1.55117 1.51636 1.43739 1.48447 1.22790 1.13252 1.48629 1.22007 0.94206 0.91453 0.95051 1.22174 0.93477 1.00860 1.01417 1.21637 1.03707 0.90905 0.98838 1.18959 0.87787 0.95674 0.95284 0.95209 1.21054 0.96949 0.92762 1.44695 0.92561 1.24911 0.97113 0.96782 0.94848 1.69858 1.08752 1.29627 1.44356 0.86596 0.78988 0.84734 0.77696 1.20693 1.21225 1.19890 1.22068 0.97849 0.79580 1.01008 0.91856 0.91715 0.90334 0.92346 0.92067 0.92033 0.91122 0.92250 0.92606 0.74092 0.84638 0.85283 0.85613 0.90695 0.91562 0.91262 0.92334 0.88552 0.94619 0.92932 0.92608 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 6.10 37.16 0.23 -1.65 16 2 C -0.06 -0.65 0.61 -154.51 -0.09 -0.74 16 3 C -0.14 -1.32 8.20 37.16 0.30 -1.01 16 4 C -0.15 -1.72 7.87 37.16 0.29 -1.42 16 5 C 0.13 1.61 1.45 -69.08 -0.10 1.51 16 6 H 0.11 1.19 5.19 -51.93 -0.27 0.92 16 7 N -1.09 -12.02 4.33 -5.88 -0.03 -12.05 16 8 S 2.61 28.58 6.07 -107.50 -0.65 27.93 16 9 C -0.67 -6.29 10.34 101.05 1.04 -5.24 16 10 O -0.96 -13.09 18.08 -57.54 -1.04 -14.13 16 11 O -0.96 -12.47 17.48 -57.54 -1.01 -13.47 16 12 C 0.49 7.39 4.15 -10.98 -0.05 7.34 16 13 O -0.53 -9.51 14.90 5.56 0.08 -9.43 16 14 N -0.60 -9.46 2.38 -172.72 -0.41 -9.87 16 15 C 0.10 1.29 5.24 -3.71 -0.02 1.27 16 16 C -0.14 -2.21 5.63 -26.61 -0.15 -2.36 16 17 C -0.11 -2.31 4.96 -26.69 -0.13 -2.45 16 18 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 19 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 20 C -0.52 -13.21 8.56 -34.44 -0.29 -13.50 16 21 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 22 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 23 N -0.89 -23.74 11.32 55.43 0.63 -23.11 16 24 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.12 2.25 5.65 -3.67 -0.02 2.23 16 29 H 0.06 0.66 6.92 -51.93 -0.36 0.30 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.14 4.71 -51.93 -0.24 0.90 16 32 H 0.06 0.53 7.76 -51.93 -0.40 0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.04 6.47 -51.93 -0.34 0.70 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 38 H 0.42 4.25 7.07 -34.47 -0.24 4.00 16 39 H 0.14 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.13 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.13 1.20 7.62 -51.92 -0.40 0.81 16 42 H 0.07 0.82 4.07 -51.93 -0.21 0.61 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.11 5.35 -51.93 -0.28 0.83 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 2.29 6.04 -51.93 -0.31 1.98 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.08 1.67 7.04 -51.93 -0.37 1.31 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -31.45 382.15 -8.93 -40.38 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.95 Total: 6.33 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 0.71 Total: -13.68 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.19 Total: -45.04 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.96 Total: -37.03 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 28.58 SS G_CDS: -0.65 Total: 27.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.45 -8.93 -40.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.432 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds