Wall clock time and date at job start Sat Apr 11 2020 07:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46932 * 2 1 4 4 C 1.52999 * 109.47089 * 239.99540 * 2 1 3 5 5 C 1.52999 * 109.46866 * 119.99708 * 2 1 3 6 6 H 1.09004 * 109.46954 * 301.70404 * 5 2 1 7 7 N 1.46504 * 109.47134 * 181.70363 * 5 2 1 8 8 S 1.65598 * 120.00159 * 146.71428 * 7 5 2 9 9 C 1.81400 * 104.44790 * 62.88357 * 8 7 5 10 10 O 1.42100 * 104.27842 * 178.95436 * 8 7 5 11 11 O 1.42100 * 104.27821 * 306.81086 * 8 7 5 12 12 C 1.50697 * 109.47418 * 61.70329 * 5 2 1 13 13 O 1.21275 * 120.00056 * 86.24481 * 12 5 2 14 14 N 1.34782 * 119.99965 * 266.24540 * 12 5 2 15 15 C 1.46920 * 120.63093 * 355.13829 * 14 12 5 16 16 C 1.53193 * 108.77571 * 126.37139 * 15 14 12 17 17 C 1.53033 * 109.31208 * 54.63594 * 16 15 14 18 18 C 1.53040 * 109.53898 * 298.63252 * 17 16 15 19 19 H 1.08997 * 109.50088 * 301.41466 * 18 17 16 20 20 C 1.50703 * 109.50006 * 181.35116 * 18 17 16 21 21 H 1.08004 * 119.99761 * 240.06747 * 20 18 17 22 22 C 1.37876 * 120.00111 * 60.06499 * 20 18 17 23 23 N 1.31512 * 119.99564 * 0.02562 * 22 20 18 24 24 Si 1.86793 * 120.00068 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47079 * 90.00354 * 24 22 20 26 26 H 1.48503 * 109.47338 * 210.00054 * 24 22 20 27 27 H 1.48501 * 109.47445 * 330.00483 * 24 22 20 28 28 C 1.46992 * 120.61278 * 175.11789 * 14 12 5 29 29 H 1.08999 * 109.47468 * 303.70319 * 1 2 3 30 30 H 1.09000 * 109.46970 * 63.70523 * 1 2 3 31 31 H 1.09005 * 109.47069 * 183.70417 * 1 2 3 32 32 H 1.09001 * 109.46924 * 186.13589 * 3 2 1 33 33 H 1.09001 * 109.46585 * 306.12917 * 3 2 1 34 34 H 1.08991 * 109.47737 * 66.13421 * 3 2 1 35 35 H 1.09003 * 109.47039 * 299.99956 * 4 2 1 36 36 H 1.08997 * 109.46877 * 59.99955 * 4 2 1 37 37 H 1.08999 * 109.46747 * 180.02562 * 4 2 1 38 38 H 0.96998 * 119.99411 * 326.71258 * 7 5 2 39 39 H 1.08997 * 109.47291 * 60.00157 * 9 8 7 40 40 H 1.09008 * 109.46714 * 180.02562 * 9 8 7 41 41 H 1.09003 * 109.47455 * 299.99473 * 9 8 7 42 42 H 1.08998 * 109.58786 * 6.57806 * 15 14 12 43 43 H 1.09002 * 109.58430 * 246.15909 * 15 14 12 44 44 H 1.08995 * 109.49451 * 294.68022 * 16 15 14 45 45 H 1.09003 * 109.49588 * 174.58662 * 16 15 14 46 46 H 1.09000 * 109.46076 * 178.61683 * 17 16 15 47 47 H 1.08995 * 109.45407 * 58.64577 * 17 16 15 48 48 H 0.97001 * 119.99940 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58551 * 113.84730 * 28 14 12 50 50 H 1.09001 * 109.62970 * 353.39919 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6518 -0.2252 2.1390 7 7 3.5044 -0.6858 1.2701 8 16 4.3102 -0.5979 2.7141 9 6 3.8679 -2.1331 3.5733 10 8 5.6838 -0.6082 2.3502 11 8 3.7342 0.5239 3.3692 12 6 1.5724 -2.1537 1.2285 13 8 2.2224 -2.9953 0.6455 14 7 0.4318 -2.4995 1.8578 15 6 -0.3105 -1.5149 2.6567 16 6 -1.7622 -1.4779 2.1689 17 6 -2.3468 -2.8915 2.2121 18 6 -1.5473 -3.8047 1.2800 19 1 -1.5800 -3.4076 0.2654 20 6 -2.1440 -5.1885 1.2978 21 1 -1.5467 -6.0301 1.6163 22 6 -3.4524 -5.3801 0.9075 23 7 -4.1795 -4.3553 0.5192 24 14 -4.1918 -7.0953 0.9290 25 1 -4.8106 -7.3510 2.2545 26 1 -5.2280 -7.2010 -0.1296 27 1 -3.1249 -8.0975 0.6792 28 6 -0.0930 -3.8688 1.7573 29 1 -0.3634 0.5702 0.8549 30 1 -0.3633 0.4552 -0.9213 31 1 -0.3633 -1.0256 0.0664 32 1 3.1244 1.4445 -0.1098 33 1 1.5897 1.9869 -0.8301 34 1 1.7691 1.9237 0.9397 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 4.0020 -0.7138 0.4379 39 1 4.1901 -2.9880 2.9789 40 1 4.3599 -2.1600 4.5457 41 1 2.7875 -2.1736 3.7121 42 1 0.1411 -0.5304 2.5350 43 1 -0.2853 -1.8033 3.7075 44 1 -1.7929 -1.1026 1.1461 45 1 -2.3465 -0.8227 2.8151 46 1 -3.3874 -2.8642 1.8889 47 1 -2.2929 -3.2757 3.2307 48 1 -5.1001 -4.4900 0.2450 49 1 -0.0501 -4.3492 2.7348 50 1 0.5016 -4.4373 1.0422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:55 Heat of formation + Delta-G solvation = -134.887536 kcal Electronic energy + Delta-G solvation = -31768.480763 eV Core-core repulsion = 27728.821589 eV Total energy + Delta-G solvation = -4039.659175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.82752 -38.93793 -38.21429 -37.90804 -37.07811 -35.35281 -34.42108 -33.01738 -32.07682 -30.37272 -28.68177 -28.17963 -27.73682 -26.86897 -25.61809 -23.30774 -21.95237 -20.61380 -20.34207 -19.69069 -18.97809 -18.44006 -17.97140 -17.76693 -17.18075 -16.65261 -16.50375 -16.38375 -15.64435 -15.29596 -15.13259 -14.94460 -14.72247 -14.42889 -14.34134 -14.15221 -14.10455 -13.87120 -13.62255 -13.55661 -13.31869 -13.24388 -13.15571 -12.96820 -12.86888 -12.85943 -12.66210 -12.59410 -12.50764 -12.18329 -11.97009 -11.94381 -11.84447 -11.75449 -11.66134 -11.44403 -11.32816 -11.08515 -10.78379 -10.40715 -10.11911 -9.44064 -8.08622 -6.22629 -0.76202 1.40601 1.41413 1.43017 1.51458 1.65262 2.14942 2.44652 2.74417 3.15053 3.18520 3.42285 3.52667 3.66248 3.85144 3.97577 4.08934 4.12308 4.19924 4.26953 4.39457 4.42328 4.55074 4.58842 4.67422 4.79988 4.84647 4.84969 4.87490 4.90469 4.93813 5.00982 5.06641 5.08926 5.15772 5.18665 5.32639 5.34430 5.43754 5.50945 5.53528 5.61645 5.65868 5.94816 5.99514 6.18785 6.38564 6.55328 6.87191 7.19338 7.45389 8.94382 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.003502 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.229973 B = 7993.568058 C = 8538.569018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.055 4.055 3 C -0.136 4.136 4 C -0.144 4.144 5 C 0.140 3.860 6 H 0.131 0.869 7 N -1.093 6.093 8 S 2.628 3.372 9 C -0.667 4.667 10 O -0.987 6.987 11 O -0.973 6.973 12 C 0.491 3.509 13 O -0.565 6.565 14 N -0.600 5.600 15 C 0.094 3.906 16 C -0.134 4.134 17 C -0.105 4.105 18 C 0.045 3.955 19 H -0.009 1.009 20 C -0.537 4.537 21 H 0.050 0.950 22 C 0.021 3.979 23 N -0.909 5.909 24 Si 0.948 3.052 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.131 3.869 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.426 0.574 39 H 0.133 0.867 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.034 0.966 48 H 0.260 0.740 49 H 0.061 0.939 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.556 12.552 4.584 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.057 4.057 3 C -0.193 4.193 4 C -0.202 4.202 5 C 0.028 3.972 6 H 0.149 0.851 7 N -0.852 5.852 8 S 2.722 3.278 9 C -0.819 4.819 10 O -0.978 6.978 11 O -0.963 6.963 12 C 0.277 3.723 13 O -0.444 6.444 14 N -0.332 5.332 15 C -0.028 4.028 16 C -0.172 4.172 17 C -0.144 4.144 18 C 0.026 3.974 19 H 0.009 0.991 20 C -0.575 4.575 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.549 5.549 24 Si 0.774 3.226 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.199 1.199 28 C 0.008 3.992 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.263 0.737 39 H 0.151 0.849 40 H 0.174 0.826 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.212 12.877 4.674 18.352 hybrid contribution -1.008 -2.226 -0.662 2.532 sum 11.203 10.651 4.012 15.970 Atomic orbital electron populations 1.22299 0.93151 1.02363 1.03894 1.20628 0.96312 0.96607 0.92187 1.21850 1.01590 0.92520 1.03337 1.21915 1.01446 0.99594 0.97212 1.21098 0.80952 0.91387 1.03723 0.85137 1.55332 1.13171 1.91127 1.25532 1.04209 0.72837 0.76955 0.73786 1.30476 1.13223 1.22158 1.16049 1.93578 1.33806 1.88278 1.82112 1.93588 1.79001 1.48171 1.75575 1.21569 0.80697 0.91684 0.78319 1.90647 1.56099 1.52932 1.44739 1.48404 1.23325 1.12186 1.49277 1.22229 0.92533 0.92500 0.95525 1.22075 0.95167 0.97809 1.02118 1.21415 1.01562 0.93742 0.97654 1.18836 0.90155 0.94579 0.93878 0.99083 1.21445 0.97299 0.94200 1.44597 0.93215 1.25586 0.97594 0.99908 0.94746 1.69990 1.08817 1.31097 1.44950 0.85715 0.78094 0.80934 0.77841 1.19900 1.21122 1.19852 1.21575 0.95510 0.81836 1.00257 0.89953 0.91027 0.93472 0.91912 0.90815 0.91265 0.94640 0.91106 0.91629 0.73670 0.84881 0.82609 0.85286 0.87278 0.89540 0.91783 0.89549 0.92066 0.94743 0.93050 0.92088 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 6.10 71.98 0.44 -3.02 16 2 C -0.06 -1.12 0.61 -52.18 -0.03 -1.16 16 3 C -0.14 -2.14 8.20 71.98 0.59 -1.55 16 4 C -0.14 -3.30 7.87 71.98 0.57 -2.73 16 5 C 0.14 3.06 1.45 44.24 0.06 3.12 16 6 H 0.13 2.32 5.19 -2.38 -0.01 2.31 16 7 N -1.09 -21.99 4.33 -172.51 -0.75 -22.74 16 8 S 2.63 52.08 6.07 -56.49 -0.34 51.73 16 9 C -0.67 -10.85 10.34 113.37 1.17 -9.68 16 10 O -0.99 -25.55 18.08 -127.65 -2.31 -27.86 16 11 O -0.97 -22.70 17.48 -127.65 -2.23 -24.94 16 12 C 0.49 14.42 4.15 87.66 0.36 14.79 16 13 O -0.57 -20.35 14.90 -3.01 -0.04 -20.39 16 14 N -0.60 -18.49 2.38 -818.74 -1.95 -20.43 16 15 C 0.09 2.28 5.24 86.36 0.45 2.74 16 16 C -0.13 -3.98 5.63 30.67 0.17 -3.81 16 17 C -0.11 -4.37 4.96 30.62 0.15 -4.22 16 18 C 0.04 2.09 2.25 -11.46 -0.03 2.06 16 19 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 20 C -0.54 -28.40 8.56 25.60 0.22 -28.18 16 21 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 22 C 0.02 1.12 5.30 84.65 0.45 1.57 16 23 N -0.91 -50.07 11.32 21.45 0.24 -49.83 16 24 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 28 C 0.13 5.18 5.65 86.35 0.49 5.67 16 29 H 0.08 1.44 6.92 -2.39 -0.02 1.42 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.35 4.71 -2.38 -0.01 1.34 16 32 H 0.06 0.95 7.76 -2.39 -0.02 0.93 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.03 1.06 6.47 -2.39 -0.02 1.04 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.33 6.57 -2.39 -0.02 1.32 16 38 H 0.43 7.96 7.07 -96.75 -0.68 7.28 16 39 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.13 2.09 7.62 -2.39 -0.02 2.07 16 42 H 0.11 1.94 4.07 -2.39 -0.01 1.93 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 1.99 5.35 -2.39 -0.01 1.98 16 45 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.06 2.99 6.04 -2.39 -0.01 2.97 16 47 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 49 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.05 2.44 7.04 -2.39 -0.02 2.42 16 Total: -1.00 -70.46 382.15 -0.01 -70.47 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.27 Total: 23.93 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 5.07 Total: -24.41 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -2.45 Total: -93.00 kcal Atomic # 8 Polarization: -68.60 SS G_CDS: -4.58 Total: -73.19 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 52.08 SS G_CDS: -0.34 Total: 51.73 kcal Total: -70.46 -0.01 -70.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.419 kcal (2) G-P(sol) polarization free energy of solvation -70.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds