Wall clock time and date at job start Sat Apr 11 2020 07:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 C 1.52991 * 109.47510 * 239.99358 * 2 1 3 5 5 C 1.50701 * 109.46956 * 60.00274 * 4 2 1 6 6 H 1.08000 * 120.00093 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00000 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99988 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99989 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47482 * 89.99653 * 9 7 5 11 11 H 1.48509 * 109.47012 * 209.99726 * 9 7 5 12 12 H 1.48498 * 109.47108 * 329.99440 * 9 7 5 13 13 C 1.53003 * 109.46495 * 119.99806 * 2 1 3 14 14 N 1.46506 * 109.47218 * 299.99568 * 13 2 1 15 15 C 1.34777 * 120.00054 * 179.97438 * 14 13 2 16 16 O 1.21276 * 120.00003 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99764 * 180.02562 * 15 14 13 18 18 H 1.08996 * 109.50158 * 299.93647 * 17 15 14 19 19 C 1.53040 * 109.49787 * 60.00537 * 17 15 14 20 20 C 1.53044 * 109.53662 * 181.34723 * 19 17 15 21 21 C 1.53191 * 109.31440 * 298.63203 * 20 19 17 22 22 N 1.46926 * 108.89109 * 54.56430 * 21 20 19 23 23 S 1.65604 * 120.62802 * 126.46057 * 22 21 20 24 24 C 1.81398 * 104.44936 * 90.00266 * 23 22 21 25 25 O 1.42104 * 104.27334 * 206.07033 * 23 22 21 26 26 O 1.42094 * 104.27992 * 333.92854 * 23 22 21 27 27 C 1.46957 * 118.71783 * 306.64359 * 22 21 20 28 28 H 1.08999 * 109.47361 * 300.00507 * 1 2 3 29 29 H 1.09002 * 109.46634 * 60.00507 * 1 2 3 30 30 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46603 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47044 * 299.99026 * 3 2 1 33 33 H 1.09000 * 109.46862 * 59.99489 * 3 2 1 34 34 H 1.09002 * 109.47288 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47515 * 300.00428 * 4 2 1 36 36 H 0.96992 * 119.99501 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46942 * 180.02562 * 13 2 1 38 38 H 1.08994 * 109.47513 * 59.99930 * 13 2 1 39 39 H 0.97001 * 119.99599 * 0.02562 * 14 13 2 40 40 H 1.08994 * 109.45892 * 61.32862 * 19 17 15 41 41 H 1.09001 * 109.45142 * 301.36091 * 19 17 15 42 42 H 1.09003 * 109.49852 * 178.68467 * 20 19 17 43 43 H 1.09001 * 109.52587 * 58.60428 * 20 19 17 44 44 H 1.09002 * 109.58786 * 174.42474 * 21 20 19 45 45 H 1.08996 * 109.58870 * 294.70753 * 21 20 19 46 46 H 1.09001 * 109.47529 * 59.99441 * 24 23 22 47 47 H 1.08998 * 109.47358 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47124 * 300.00199 * 24 23 22 49 49 H 1.09001 * 109.46843 * 293.57352 * 27 22 21 50 50 H 1.08997 * 109.71602 * 173.28846 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9173 0.8673 -2.3806 7 6 1.8714 -0.4818 -3.7318 8 7 1.4335 0.1384 -4.8058 9 14 2.9454 -2.0006 -3.9030 10 1 2.0868 -3.2114 -3.9490 11 1 3.7378 -1.9079 -5.1556 12 1 3.8653 -2.0899 -2.7408 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0305 2.4455 15 6 1.8766 -0.4912 3.6696 16 8 2.5737 -1.4774 3.7810 17 6 1.3738 0.2190 4.9000 18 1 1.7378 1.2463 4.9014 19 6 -0.1566 0.2193 4.9000 20 6 -0.6682 0.9696 6.1319 21 6 -0.1850 0.2546 7.3975 22 7 1.2767 0.1182 7.3382 23 16 2.2259 0.6602 8.5823 24 6 2.3701 -0.7648 9.6955 25 8 3.4769 0.9437 7.9708 26 8 1.4561 1.6899 9.1875 27 6 1.8802 -0.5046 6.1517 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1301 -0.7217 -1.2488 35 1 1.6768 -1.7490 -1.2491 36 1 1.6679 -0.1931 -5.6866 37 1 3.1299 -0.7209 1.2496 38 1 1.6765 -1.7488 1.2494 39 1 0.9937 0.7580 2.3564 40 1 -0.5200 -0.8080 4.9237 41 1 -0.5195 0.7122 3.9980 42 1 -1.7580 0.9897 6.1191 43 1 -0.2855 1.9902 6.1219 44 1 -0.4622 0.8382 8.2754 45 1 -0.6420 -0.7332 7.4563 46 1 2.8322 -1.5963 9.1634 47 1 2.9865 -0.4951 10.5530 48 1 1.3784 -1.0595 10.0387 49 1 1.5936 -1.5553 6.1075 50 1 2.9659 -0.4240 6.2062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599940783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:59 Heat of formation + Delta-G solvation = -125.175991 kcal Electronic energy + Delta-G solvation = -29471.408721 eV Core-core repulsion = 25432.170670 eV Total energy + Delta-G solvation = -4039.238051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.29334 -38.32857 -37.56046 -37.09905 -36.31667 -33.85000 -32.90974 -32.04102 -31.54669 -29.91633 -27.87195 -26.58256 -26.52964 -25.00890 -24.18635 -22.38407 -21.35947 -20.04822 -19.17795 -18.45862 -18.04308 -17.00881 -16.76437 -16.71104 -16.34898 -15.72258 -15.46828 -15.01938 -14.71319 -14.37753 -14.19934 -14.13013 -13.91539 -13.64176 -13.56033 -13.46216 -13.34214 -13.08834 -12.74513 -12.48089 -12.45108 -12.33908 -12.30342 -12.21618 -11.85382 -11.49690 -11.36542 -11.29222 -11.25932 -11.13917 -11.01905 -10.86493 -10.63622 -10.50829 -9.99151 -9.90019 -9.75373 -9.53683 -9.32854 -9.00888 -8.83608 -8.54743 -6.05486 -4.02794 -0.18804 2.15604 2.68653 3.30158 3.30797 3.38770 3.42699 3.45849 3.70925 4.08889 4.32911 4.41018 4.44516 4.49012 4.51478 4.66507 4.77453 4.90388 5.06449 5.11196 5.19237 5.26993 5.34250 5.38584 5.44281 5.45821 5.50676 5.61064 5.61725 5.68485 5.81226 5.93474 6.08056 6.09871 6.11725 6.17091 6.29191 6.45549 6.57346 6.66535 6.88014 6.99580 7.03208 7.18342 7.34869 7.61806 7.77988 8.30182 8.51529 8.98517 9.57205 11.07216 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.002127 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.689823 B =13159.970711 C =13569.519256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.718 5.718 15 C 0.516 3.484 16 O -0.546 6.546 17 C -0.120 4.120 18 H 0.103 0.897 19 C -0.110 4.110 20 C -0.129 4.129 21 C 0.115 3.885 22 N -1.001 6.001 23 S 2.609 3.391 24 C -0.673 4.673 25 O -0.951 6.951 26 O -0.956 6.956 27 C 0.138 3.862 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.400 0.600 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.080 0.920 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 -0.405 29.571 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.370 5.370 15 C 0.301 3.699 16 O -0.424 6.424 17 C -0.143 4.143 18 H 0.121 0.879 19 C -0.148 4.148 20 C -0.168 4.168 21 C -0.010 4.010 22 N -0.839 5.839 23 S 2.703 3.297 24 C -0.823 4.823 25 O -0.941 6.941 26 O -0.946 6.946 27 C 0.013 3.987 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.235 0.765 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.148 0.852 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.098 0.902 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.301 -0.276 29.547 29.732 hybrid contribution 0.179 -1.177 -0.218 1.211 sum -3.122 -1.453 29.329 29.530 Atomic orbital electron populations 1.21774 0.94811 1.01215 1.00759 1.20688 0.95796 0.95918 0.93926 1.21778 1.00509 0.95574 1.00776 1.19591 0.96302 0.95470 0.92631 1.21072 1.31839 1.13340 0.88604 0.90403 1.25008 0.95716 0.96777 0.96002 1.69902 1.45933 1.40551 0.97882 0.86852 0.81322 0.83873 0.77667 1.20405 1.21513 1.18987 1.21654 0.98960 0.95995 0.83172 1.46174 1.53063 1.31960 1.05754 1.20346 0.80364 0.84584 0.84601 1.90696 1.38257 1.26523 1.86935 1.21618 0.97721 1.01718 0.93273 0.87906 1.21503 0.92585 1.01855 0.98870 1.21849 1.01150 0.99963 0.93868 1.21506 0.78624 1.01066 0.99817 1.57751 1.16623 1.77677 1.31827 1.04913 0.73841 0.76242 0.74743 1.30580 1.11545 1.22599 1.17574 1.93631 1.43209 1.83200 1.74063 1.93600 1.70618 1.52418 1.77958 1.21215 0.98897 0.96555 0.82054 0.95044 0.90877 0.93422 0.93367 0.90860 0.95014 0.96364 0.96837 0.92793 0.91773 0.91804 0.76454 0.90918 0.90780 0.90097 0.90906 0.88704 0.91207 0.85200 0.85504 0.85420 0.90209 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 2 C -0.06 -1.11 0.54 -154.51 -0.08 -1.20 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.00 -0.05 3.11 -27.89 -0.09 -0.13 16 5 C -0.51 -13.49 8.20 -34.44 -0.28 -13.77 16 6 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 9 Si 0.88 21.36 27.47 -169.99 -4.67 16.70 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.13 2.01 4.56 -4.04 -0.02 1.99 16 14 N -0.72 -9.33 4.84 -60.29 -0.29 -9.62 16 15 C 0.52 6.77 7.16 -10.99 -0.08 6.69 16 16 O -0.55 -9.11 15.93 5.56 0.09 -9.02 16 17 C -0.12 -1.15 2.68 -91.65 -0.25 -1.39 16 18 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.11 -0.81 5.08 -26.69 -0.14 -0.94 16 20 C -0.13 -0.77 6.08 -26.61 -0.16 -0.93 16 21 C 0.11 0.64 6.43 -3.71 -0.02 0.62 16 22 N -1.00 -7.14 3.23 -113.50 -0.37 -7.51 16 23 S 2.61 19.70 6.10 -107.50 -0.66 19.05 16 24 C -0.67 -2.61 10.99 101.05 1.11 -1.50 16 25 O -0.95 -10.92 16.59 -57.54 -0.95 -11.87 16 26 O -0.96 -9.72 16.59 -57.54 -0.95 -10.67 16 27 C 0.14 1.25 5.06 -3.69 -0.02 1.23 16 28 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 29 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 33 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 34 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.40 4.39 5.56 -40.82 -0.23 4.16 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.51 7.53 -51.93 -0.39 0.12 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.48 6.86 -51.93 -0.36 0.13 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 47 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 0.68 7.96 -51.93 -0.41 0.27 16 50 H 0.10 1.03 6.87 -51.93 -0.36 0.68 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -35.49 395.34 -9.06 -44.55 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.46 Total: -0.01 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 0.48 Total: -11.29 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.11 Total: -43.39 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.82 Total: -31.57 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 19.70 SS G_CDS: -0.66 Total: 19.05 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.49 -9.06 -44.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599940783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.628 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds