Wall clock time and date at job start Sat Apr 11 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 C 1.52991 * 109.47510 * 239.99358 * 2 1 3 5 5 C 1.50701 * 109.46956 * 60.00274 * 4 2 1 6 6 H 1.08000 * 120.00093 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00000 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99988 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99989 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47482 * 89.99653 * 9 7 5 11 11 H 1.48509 * 109.47012 * 209.99726 * 9 7 5 12 12 H 1.48498 * 109.47108 * 329.99440 * 9 7 5 13 13 C 1.53003 * 109.46495 * 119.99806 * 2 1 3 14 14 N 1.46506 * 109.47218 * 299.99568 * 13 2 1 15 15 C 1.34777 * 120.00054 * 179.97438 * 14 13 2 16 16 O 1.21276 * 120.00003 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99764 * 180.02562 * 15 14 13 18 18 H 1.08996 * 109.50158 * 299.93647 * 17 15 14 19 19 C 1.53040 * 109.49787 * 60.00537 * 17 15 14 20 20 C 1.53044 * 109.53662 * 181.34723 * 19 17 15 21 21 C 1.53191 * 109.31440 * 298.63203 * 20 19 17 22 22 N 1.46926 * 108.89109 * 54.56430 * 21 20 19 23 23 S 1.65604 * 120.62802 * 126.46057 * 22 21 20 24 24 C 1.81398 * 104.44936 * 90.00266 * 23 22 21 25 25 O 1.42104 * 104.27334 * 206.07033 * 23 22 21 26 26 O 1.42094 * 104.27992 * 333.92854 * 23 22 21 27 27 C 1.46957 * 118.71783 * 306.64359 * 22 21 20 28 28 H 1.08999 * 109.47361 * 300.00507 * 1 2 3 29 29 H 1.09002 * 109.46634 * 60.00507 * 1 2 3 30 30 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46603 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47044 * 299.99026 * 3 2 1 33 33 H 1.09000 * 109.46862 * 59.99489 * 3 2 1 34 34 H 1.09002 * 109.47288 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47515 * 300.00428 * 4 2 1 36 36 H 0.96992 * 119.99501 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46942 * 180.02562 * 13 2 1 38 38 H 1.08994 * 109.47513 * 59.99930 * 13 2 1 39 39 H 0.97001 * 119.99599 * 0.02562 * 14 13 2 40 40 H 1.08994 * 109.45892 * 61.32862 * 19 17 15 41 41 H 1.09001 * 109.45142 * 301.36091 * 19 17 15 42 42 H 1.09003 * 109.49852 * 178.68467 * 20 19 17 43 43 H 1.09001 * 109.52587 * 58.60428 * 20 19 17 44 44 H 1.09002 * 109.58786 * 174.42474 * 21 20 19 45 45 H 1.08996 * 109.58870 * 294.70753 * 21 20 19 46 46 H 1.09001 * 109.47529 * 59.99441 * 24 23 22 47 47 H 1.08998 * 109.47358 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47124 * 300.00199 * 24 23 22 49 49 H 1.09001 * 109.46843 * 293.57352 * 27 22 21 50 50 H 1.08997 * 109.71602 * 173.28846 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9173 0.8673 -2.3806 7 6 1.8714 -0.4818 -3.7318 8 7 1.4335 0.1384 -4.8058 9 14 2.9454 -2.0006 -3.9030 10 1 2.0868 -3.2114 -3.9490 11 1 3.7378 -1.9079 -5.1556 12 1 3.8653 -2.0899 -2.7408 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0305 2.4455 15 6 1.8766 -0.4912 3.6696 16 8 2.5737 -1.4774 3.7810 17 6 1.3738 0.2190 4.9000 18 1 1.7378 1.2463 4.9014 19 6 -0.1566 0.2193 4.9000 20 6 -0.6682 0.9696 6.1319 21 6 -0.1850 0.2546 7.3975 22 7 1.2767 0.1182 7.3382 23 16 2.2259 0.6602 8.5823 24 6 2.3701 -0.7648 9.6955 25 8 3.4769 0.9437 7.9708 26 8 1.4561 1.6899 9.1875 27 6 1.8802 -0.5046 6.1517 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1301 -0.7217 -1.2488 35 1 1.6768 -1.7490 -1.2491 36 1 1.6679 -0.1931 -5.6866 37 1 3.1299 -0.7209 1.2496 38 1 1.6765 -1.7488 1.2494 39 1 0.9937 0.7580 2.3564 40 1 -0.5200 -0.8080 4.9237 41 1 -0.5195 0.7122 3.9980 42 1 -1.7580 0.9897 6.1191 43 1 -0.2855 1.9902 6.1219 44 1 -0.4622 0.8382 8.2754 45 1 -0.6420 -0.7332 7.4563 46 1 2.8322 -1.5963 9.1634 47 1 2.9865 -0.4951 10.5530 48 1 1.3784 -1.0595 10.0387 49 1 1.5936 -1.5553 6.1075 50 1 2.9659 -0.4240 6.2062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599940783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:58 Heat of formation + Delta-G solvation = -151.673014 kcal Electronic energy + Delta-G solvation = -29472.557718 eV Core-core repulsion = 25432.170670 eV Total energy + Delta-G solvation = -4040.387048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.27841 -39.25908 -38.36313 -38.21290 -37.00842 -35.24132 -34.17348 -33.34229 -32.19106 -30.26802 -29.72517 -27.97895 -27.76412 -25.57416 -25.22032 -23.94253 -22.10105 -21.03620 -19.78243 -19.72778 -18.91264 -18.82779 -17.78727 -17.35109 -17.08000 -16.80972 -16.46939 -16.15508 -15.63224 -15.52661 -15.32271 -15.08087 -15.00794 -14.68027 -14.38677 -14.20597 -14.15743 -13.96254 -13.91910 -13.77554 -13.71366 -13.18642 -13.12070 -12.98158 -12.91430 -12.84628 -12.59810 -12.48295 -12.29420 -12.16121 -12.03033 -11.91405 -11.84772 -11.76912 -11.50474 -11.43174 -11.25744 -10.91824 -10.70451 -10.69951 -10.03542 -9.93487 -8.22135 -6.22084 -0.72130 1.35723 1.38836 1.48706 1.59548 1.65547 2.27633 2.39198 2.94262 3.13290 3.16000 3.48459 3.78693 3.84910 3.94389 3.95593 4.07477 4.10540 4.15941 4.17635 4.23405 4.33743 4.42380 4.59838 4.65079 4.72670 4.80795 4.84093 4.87117 4.93804 4.95783 4.97987 5.03302 5.04325 5.10404 5.16381 5.25167 5.30841 5.37527 5.41663 5.42806 5.49940 5.57441 5.61426 5.70511 5.77399 6.38348 6.59156 6.84953 7.26682 7.40618 8.93408 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.002127 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.689823 B =13159.970711 C =13569.519256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.500 4.500 6 H 0.052 0.948 7 C 0.004 3.996 8 N -0.951 5.951 9 Si 0.934 3.066 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.252 1.252 13 C 0.138 3.862 14 N -0.710 5.710 15 C 0.517 3.483 16 O -0.583 6.583 17 C -0.116 4.116 18 H 0.106 0.894 19 C -0.107 4.107 20 C -0.129 4.129 21 C 0.107 3.893 22 N -0.999 5.999 23 S 2.610 3.390 24 C -0.651 4.651 25 O -0.999 6.999 26 O -0.987 6.987 27 C 0.140 3.860 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.013 0.987 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.412 0.588 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.153 0.847 49 H 0.086 0.914 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 -1.587 32.529 32.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.042 4.042 5 C -0.538 4.538 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.760 3.240 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.176 1.176 13 C 0.014 3.986 14 N -0.362 5.362 15 C 0.304 3.696 16 O -0.463 6.463 17 C -0.139 4.139 18 H 0.124 0.876 19 C -0.145 4.145 20 C -0.168 4.168 21 C -0.017 4.017 22 N -0.837 5.837 23 S 2.708 3.292 24 C -0.805 4.805 25 O -0.990 6.990 26 O -0.978 6.978 27 C 0.014 3.986 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.160 0.840 47 H 0.161 0.839 48 H 0.171 0.829 49 H 0.104 0.896 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.173 -1.403 32.508 32.805 hybrid contribution 0.406 -0.784 -1.055 1.376 sum -3.767 -2.187 31.453 31.753 Atomic orbital electron populations 1.21697 0.93700 1.01347 1.01271 1.20548 0.96633 0.95910 0.92725 1.21713 1.00155 0.95132 1.01219 1.19572 0.95863 0.95558 0.93207 1.21368 1.30164 1.12243 0.90071 0.92962 1.25848 0.97487 0.99946 0.95942 1.70043 1.48172 1.42656 0.98419 0.85891 0.79863 0.80431 0.77845 1.19605 1.21596 1.17631 1.21275 0.98147 0.95699 0.83473 1.46011 1.53120 1.32129 1.04952 1.20942 0.79383 0.84041 0.85254 1.90681 1.39849 1.28337 1.87434 1.21644 0.99482 1.01232 0.91549 0.87588 1.21526 0.90483 1.02444 0.99999 1.21874 1.02378 0.99219 0.93290 1.21742 0.77543 1.02498 0.99896 1.57582 1.17269 1.77523 1.31277 1.04621 0.72539 0.77068 0.74933 1.30369 1.13698 1.19841 1.16581 1.93570 1.45215 1.84744 1.75460 1.93555 1.70932 1.54995 1.78313 1.21094 0.98101 0.96916 0.82498 0.91130 0.93742 0.93474 0.93905 0.93614 0.91339 0.96903 0.96737 0.92896 0.92999 0.92343 0.75042 0.90577 0.90045 0.88031 0.91797 0.88146 0.88890 0.83955 0.83921 0.82898 0.89626 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.05 71.98 0.58 -3.32 16 2 C -0.06 -1.99 0.54 -52.18 -0.03 -2.02 16 3 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 5 C -0.50 -26.95 8.20 25.60 0.21 -26.74 16 6 H 0.05 3.03 5.92 -2.91 -0.02 3.01 16 7 C 0.00 0.22 5.47 84.65 0.46 0.69 16 8 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 9 Si 0.93 44.30 27.47 68.60 1.88 46.18 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 13 C 0.14 4.24 4.56 86.38 0.39 4.64 16 14 N -0.71 -16.93 4.84 -463.06 -2.24 -19.17 16 15 C 0.52 12.75 7.16 87.66 0.63 13.37 16 16 O -0.58 -18.93 15.93 -3.02 -0.05 -18.98 16 17 C -0.12 -2.01 2.68 -11.46 -0.03 -2.04 16 18 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 19 C -0.11 -1.25 5.08 30.62 0.16 -1.10 16 20 C -0.13 -1.16 6.08 30.67 0.19 -0.98 16 21 C 0.11 0.90 6.43 86.36 0.55 1.46 16 22 N -1.00 -12.45 3.23 -512.99 -1.66 -14.11 16 23 S 2.61 36.47 6.10 -56.49 -0.34 36.13 16 24 C -0.65 -2.99 10.99 113.37 1.25 -1.75 16 25 O -1.00 -23.11 16.59 -127.65 -2.12 -25.23 16 26 O -0.99 -19.21 16.59 -127.65 -2.12 -21.32 16 27 C 0.14 2.34 5.06 86.36 0.44 2.77 16 28 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 29 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 33 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 34 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 35 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.41 7.77 5.56 -92.71 -0.52 7.26 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.85 7.53 -2.39 -0.02 0.83 16 42 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 0.77 6.86 -2.39 -0.02 0.75 16 45 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 49 H 0.09 1.32 7.96 -2.39 -0.02 1.30 16 50 H 0.08 1.71 6.87 -2.39 -0.02 1.69 16 Total: -1.00 -79.55 395.34 -0.52 -80.06 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.36 Total: 13.28 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.47 Total: -18.64 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -3.60 Total: -91.49 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -4.28 Total: -65.53 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Atomic # 16 Polarization: 36.47 SS G_CDS: -0.34 Total: 36.13 kcal Total: -79.55 -0.52 -80.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599940783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.608 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds