Wall clock time and date at job start Sat Apr 11 2020 07:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47768 * 2 1 4 4 C 1.52995 * 109.47768 * 180.02562 * 3 2 1 5 5 C 1.52989 * 109.47630 * 179.97438 * 4 3 2 6 6 S 1.81399 * 109.47418 * 180.02562 * 5 4 3 7 7 O 1.42102 * 108.57919 * 65.51383 * 6 5 4 8 8 O 1.42097 * 108.57823 * 294.48629 * 6 5 4 9 9 C 1.81402 * 101.92273 * 179.97438 * 6 5 4 10 10 C 1.50700 * 109.47001 * 179.97438 * 9 6 5 11 11 O 1.21275 * 120.00358 * 0.02562 * 10 9 6 12 12 N 1.34781 * 119.99939 * 180.02562 * 10 9 6 13 13 C 1.46500 * 119.99994 * 179.97438 * 12 10 9 14 14 C 1.53076 * 109.43981 * 84.79590 * 13 12 10 15 15 C 1.53183 * 109.29478 * 181.23571 * 14 13 12 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45902 * 204.99610 * 13 12 10 27 27 H 1.08999 * 109.47490 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46873 * 300.00537 * 1 2 3 29 29 H 1.09003 * 109.46934 * 59.99444 * 1 2 3 30 30 H 1.09005 * 109.47268 * 239.99819 * 2 1 3 31 31 H 1.09001 * 109.47322 * 120.00185 * 2 1 3 32 32 H 1.09005 * 109.46874 * 59.99577 * 3 2 1 33 33 H 1.09001 * 109.46850 * 300.00473 * 3 2 1 34 34 H 1.09007 * 109.46873 * 59.99463 * 4 3 2 35 35 H 1.09003 * 109.46934 * 300.00556 * 4 3 2 36 36 H 1.09003 * 109.47295 * 60.00299 * 5 4 3 37 37 H 1.09003 * 109.47425 * 300.00266 * 5 4 3 38 38 H 1.09003 * 109.46824 * 60.00178 * 9 6 5 39 39 H 1.09000 * 109.47157 * 300.00301 * 9 6 5 40 40 H 0.97007 * 119.99982 * 359.97438 * 12 10 9 41 41 H 1.08994 * 109.45870 * 324.97548 * 13 12 10 42 42 H 1.09005 * 109.39190 * 61.35477 * 14 13 12 43 43 H 1.09004 * 109.62337 * 301.25270 * 14 13 12 44 44 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 45 45 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 46 46 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 48 48 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 49 49 H 1.09003 * 109.49897 * 58.68032 * 26 13 12 50 50 H 1.09000 * 109.52987 * 298.59684 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0802 2.8848 -0.0013 6 16 5.8941 2.8847 -0.0028 7 8 6.3459 2.3262 -1.2289 8 8 6.3479 2.3266 1.2227 9 6 6.2690 4.6596 -0.0042 10 6 7.7629 4.8575 -0.0049 11 8 8.5020 3.8960 -0.0050 12 7 8.2777 6.1031 -0.0055 13 6 9.7300 6.2955 -0.0056 14 6 10.2522 6.2320 -1.4432 15 6 11.7745 6.4026 -1.4367 16 7 12.1113 7.6425 -0.7238 17 6 12.9015 8.5932 -1.3126 18 1 12.7920 9.6320 -1.0380 19 6 13.8433 8.2220 -2.2622 20 7 14.2165 6.9637 -2.3623 21 14 14.5812 9.5081 -3.3984 22 1 13.9995 10.8380 -3.0846 23 1 16.0528 9.5539 -3.2048 24 1 14.2782 9.1551 -4.8087 25 6 11.5843 7.8424 0.6331 26 6 10.0637 7.6591 0.6035 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9286 -0.8909 35 1 3.9337 0.9284 0.8891 36 1 3.7173 3.3989 0.8887 37 1 3.7165 3.3984 -0.8913 38 1 5.8421 5.1217 0.8859 39 1 5.8405 5.1207 -0.8941 40 1 7.6866 6.8722 -0.0058 41 1 10.2005 5.5091 0.5845 42 1 9.7988 7.0319 -2.0286 43 1 9.9960 5.2683 -1.8835 44 1 12.1401 6.4600 -2.4621 45 1 12.2352 5.5538 -0.9315 46 1 14.8749 6.7043 -3.0257 47 1 12.0275 7.1107 1.3086 48 1 11.8267 8.8487 0.9746 49 1 9.6714 7.7097 1.6192 50 1 9.6140 8.4476 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:13 Heat of formation + Delta-G solvation = -107.458279 kcal Electronic energy + Delta-G solvation = -28368.194516 eV Core-core repulsion = 24329.724764 eV Total energy + Delta-G solvation = -4038.469753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -39.93165 -37.45738 -37.12658 -36.82226 -36.09550 -34.57766 -32.84458 -32.38697 -30.96698 -29.96096 -29.13066 -27.52429 -25.00782 -23.02949 -22.32590 -22.12094 -21.56658 -20.54703 -19.43924 -18.97034 -17.60113 -17.12728 -16.84781 -16.56694 -16.15080 -16.09843 -15.44270 -15.15118 -14.76271 -14.46534 -14.25691 -13.97578 -13.93780 -13.74349 -13.53617 -13.15663 -13.02482 -12.81766 -12.52056 -12.48524 -12.46646 -12.17177 -12.10900 -11.98807 -11.57889 -11.55954 -11.48585 -11.30432 -11.16033 -11.04262 -10.98249 -10.75237 -10.62248 -10.47317 -10.24708 -10.19887 -10.08226 -9.79931 -9.57398 -8.85645 -8.45376 -6.69964 -5.79294 -3.22950 -0.39581 2.42365 2.48407 2.91342 3.36831 3.44427 3.46474 3.56526 3.71043 4.05549 4.18263 4.36024 4.42867 4.47508 4.48468 4.65972 4.68451 4.80163 4.91029 4.95712 5.20468 5.22619 5.23995 5.36312 5.37292 5.37714 5.41416 5.53678 5.57910 5.63941 5.76333 5.76620 5.84884 6.02724 6.17757 6.23972 6.36330 6.54317 6.61943 6.73685 6.79785 6.90263 7.34566 7.42754 7.67968 7.78966 8.07516 8.44030 9.19775 9.82945 10.39620 11.29276 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.031872 B = 0.001794 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.307819 B =15604.729415 C =15861.819382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.112 4.112 4 C -0.114 4.114 5 C -0.620 4.620 6 S 2.450 3.550 7 O -0.917 6.917 8 O -0.919 6.919 9 C -0.662 4.662 10 C 0.536 3.464 11 O -0.527 6.527 12 N -0.711 5.711 13 C 0.146 3.854 14 C -0.149 4.149 15 C 0.173 3.827 16 N -0.592 5.592 17 C -0.256 4.256 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.148 3.852 26 C -0.138 4.138 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.398 0.602 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.022 0.978 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.810 -6.596 6.040 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.151 4.151 4 C -0.153 4.153 5 C -0.749 4.749 6 S 2.627 3.373 7 O -0.914 6.914 8 O -0.916 6.916 9 C -0.789 4.789 10 C 0.319 3.681 11 O -0.404 6.404 12 N -0.360 5.360 13 C 0.043 3.957 14 C -0.189 4.189 15 C 0.046 3.954 16 N -0.315 5.315 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.232 0.768 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.041 0.959 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.511 -8.005 5.932 29.260 hybrid contribution -0.613 1.944 -0.657 2.142 sum -28.125 -6.061 5.275 29.250 Atomic orbital electron populations 1.21773 0.95681 1.01777 1.01813 1.21585 0.96062 0.96591 1.02576 1.21587 0.93486 0.97383 1.02612 1.21369 0.97855 0.91761 1.04312 1.30485 1.26248 1.06525 1.11606 1.07504 0.77300 0.76513 0.75935 1.93598 1.78446 1.73628 1.45695 1.93586 1.78473 1.73685 1.45846 1.30896 1.03877 1.31022 1.13116 1.19070 0.87129 0.84691 0.77215 1.90884 1.60463 1.39482 1.49590 1.46215 1.09422 1.06703 1.73704 1.21213 0.77172 0.98578 0.98705 1.22602 1.01262 1.00611 0.94433 1.20767 0.87482 0.87531 0.99593 1.44108 1.56945 1.19745 1.10701 1.19203 1.11893 0.88086 1.19375 0.91591 1.25074 0.96686 0.96192 1.01606 1.70042 1.32763 1.15796 1.35788 0.86234 0.78656 0.81054 0.80862 1.20280 1.21691 1.21552 1.20840 0.89452 0.99214 0.88435 1.22342 1.00852 0.95415 0.99223 0.92638 0.92737 0.92714 0.91630 0.91653 0.91509 0.91490 0.89923 0.89951 0.84889 0.84849 0.82527 0.82442 0.76795 0.89546 0.92559 0.92511 0.89137 0.95941 0.93555 0.96087 0.92222 0.92515 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.32 16 2 C -0.13 -0.66 5.93 -26.73 -0.16 -0.82 16 3 C -0.11 -0.56 5.21 -26.73 -0.14 -0.70 16 4 C -0.11 -0.72 5.22 -26.74 -0.14 -0.86 16 5 C -0.62 -3.07 5.81 37.15 0.22 -2.85 16 6 S 2.45 25.09 3.96 -107.50 -0.43 24.66 16 7 O -0.92 -13.39 17.95 -59.52 -1.07 -14.46 16 8 O -0.92 -13.09 17.95 -59.53 -1.07 -14.15 16 9 C -0.66 -5.25 6.29 36.01 0.23 -5.03 16 10 C 0.54 7.70 7.81 -10.98 -0.09 7.62 16 11 O -0.53 -10.27 15.29 2.56 0.04 -10.24 16 12 N -0.71 -9.48 5.08 -53.75 -0.27 -9.75 16 13 C 0.15 2.52 2.41 -67.87 -0.16 2.36 16 14 C -0.15 -2.97 5.66 -26.60 -0.15 -3.12 16 15 C 0.17 4.22 5.30 -3.71 -0.02 4.20 16 16 N -0.59 -14.71 3.00 -172.33 -0.52 -15.23 16 17 C -0.26 -6.96 9.58 -15.06 -0.14 -7.10 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -26.38 11.20 55.49 0.62 -25.76 16 21 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 26 C -0.14 -2.23 5.55 -26.62 -0.15 -2.38 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.23 8.14 -51.92 -0.42 -0.20 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 37 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.16 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.16 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 41 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 412.51 15.07 6.22 6.22 Total: -1.00 -38.67 412.51 -11.01 -49.67 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -9.05 Total: -1.52 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.45 Total: -6.00 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.17 Total: -50.74 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -2.10 Total: -38.85 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 25.09 SS G_CDS: -0.43 Total: 24.66 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -38.67 -11.01 -49.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.788 kcal (2) G-P(sol) polarization free energy of solvation -38.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds