Wall clock time and date at job start Sat Apr 11 2020 07:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47768 * 2 1 4 4 C 1.52995 * 109.47768 * 180.02562 * 3 2 1 5 5 C 1.52989 * 109.47630 * 179.97438 * 4 3 2 6 6 S 1.81399 * 109.47418 * 180.02562 * 5 4 3 7 7 O 1.42102 * 108.57919 * 65.51383 * 6 5 4 8 8 O 1.42097 * 108.57823 * 294.48629 * 6 5 4 9 9 C 1.81402 * 101.92273 * 179.97438 * 6 5 4 10 10 C 1.50700 * 109.47001 * 179.97438 * 9 6 5 11 11 O 1.21275 * 120.00358 * 0.02562 * 10 9 6 12 12 N 1.34781 * 119.99939 * 180.02562 * 10 9 6 13 13 C 1.46500 * 119.99994 * 179.97438 * 12 10 9 14 14 C 1.53076 * 109.43981 * 84.79590 * 13 12 10 15 15 C 1.53183 * 109.29478 * 181.23571 * 14 13 12 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45902 * 204.99610 * 13 12 10 27 27 H 1.08999 * 109.47490 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46873 * 300.00537 * 1 2 3 29 29 H 1.09003 * 109.46934 * 59.99444 * 1 2 3 30 30 H 1.09005 * 109.47268 * 239.99819 * 2 1 3 31 31 H 1.09001 * 109.47322 * 120.00185 * 2 1 3 32 32 H 1.09005 * 109.46874 * 59.99577 * 3 2 1 33 33 H 1.09001 * 109.46850 * 300.00473 * 3 2 1 34 34 H 1.09007 * 109.46873 * 59.99463 * 4 3 2 35 35 H 1.09003 * 109.46934 * 300.00556 * 4 3 2 36 36 H 1.09003 * 109.47295 * 60.00299 * 5 4 3 37 37 H 1.09003 * 109.47425 * 300.00266 * 5 4 3 38 38 H 1.09003 * 109.46824 * 60.00178 * 9 6 5 39 39 H 1.09000 * 109.47157 * 300.00301 * 9 6 5 40 40 H 0.97007 * 119.99982 * 359.97438 * 12 10 9 41 41 H 1.08994 * 109.45870 * 324.97548 * 13 12 10 42 42 H 1.09005 * 109.39190 * 61.35477 * 14 13 12 43 43 H 1.09004 * 109.62337 * 301.25270 * 14 13 12 44 44 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 45 45 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 46 46 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 48 48 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 49 49 H 1.09003 * 109.49897 * 58.68032 * 26 13 12 50 50 H 1.09000 * 109.52987 * 298.59684 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0802 2.8848 -0.0013 6 16 5.8941 2.8847 -0.0028 7 8 6.3459 2.3262 -1.2289 8 8 6.3479 2.3266 1.2227 9 6 6.2690 4.6596 -0.0042 10 6 7.7629 4.8575 -0.0049 11 8 8.5020 3.8960 -0.0050 12 7 8.2777 6.1031 -0.0055 13 6 9.7300 6.2955 -0.0056 14 6 10.2522 6.2320 -1.4432 15 6 11.7745 6.4026 -1.4367 16 7 12.1113 7.6425 -0.7238 17 6 12.9015 8.5932 -1.3126 18 1 12.7920 9.6320 -1.0380 19 6 13.8433 8.2220 -2.2622 20 7 14.2165 6.9637 -2.3623 21 14 14.5812 9.5081 -3.3984 22 1 13.9995 10.8380 -3.0846 23 1 16.0528 9.5539 -3.2048 24 1 14.2782 9.1551 -4.8087 25 6 11.5843 7.8424 0.6331 26 6 10.0637 7.6591 0.6035 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9286 -0.8909 35 1 3.9337 0.9284 0.8891 36 1 3.7173 3.3989 0.8887 37 1 3.7165 3.3984 -0.8913 38 1 5.8421 5.1217 0.8859 39 1 5.8405 5.1207 -0.8941 40 1 7.6866 6.8722 -0.0058 41 1 10.2005 5.5091 0.5845 42 1 9.7988 7.0319 -2.0286 43 1 9.9960 5.2683 -1.8835 44 1 12.1401 6.4600 -2.4621 45 1 12.2352 5.5538 -0.9315 46 1 14.8749 6.7043 -3.0257 47 1 12.0275 7.1107 1.3086 48 1 11.8267 8.8487 0.9746 49 1 9.6714 7.7097 1.6192 50 1 9.6140 8.4476 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609328546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:11 Heat of formation + Delta-G solvation = -137.514602 kcal Electronic energy + Delta-G solvation = -28369.497856 eV Core-core repulsion = 24329.724764 eV Total energy + Delta-G solvation = -4039.773093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.16019 -39.06125 -38.00053 -37.26339 -36.91625 -36.13988 -34.08197 -33.23783 -32.29807 -31.60581 -30.52164 -27.94084 -26.86924 -24.04624 -23.91898 -23.29967 -21.98186 -21.72162 -21.04909 -19.77152 -18.94050 -18.40554 -17.86789 -17.45915 -17.07584 -16.88718 -16.69005 -16.35554 -16.09842 -15.60204 -15.38254 -15.01602 -14.92902 -14.74402 -14.61317 -14.48092 -14.34975 -14.12505 -13.60245 -13.23163 -13.18986 -13.06688 -13.03058 -12.99203 -12.94357 -12.70203 -12.60373 -12.42984 -12.17845 -12.04936 -12.01876 -11.96307 -11.89366 -11.84008 -11.59125 -11.52822 -11.39383 -11.25523 -11.06537 -10.61559 -10.14813 -8.73625 -7.88745 -5.35846 -1.09300 1.36886 1.46634 1.48033 1.59084 1.81577 1.93568 2.50669 2.85106 3.08388 3.27432 3.48174 3.59237 3.65285 3.82535 3.83450 3.98786 4.03898 4.05803 4.23733 4.29052 4.29925 4.33793 4.44104 4.56109 4.58272 4.63432 4.76639 4.81675 4.82152 4.88091 5.00333 5.00429 5.00539 5.03883 5.10350 5.16978 5.28971 5.31916 5.41379 5.41397 5.43854 5.50468 5.62591 5.67134 6.34564 6.37056 7.08308 7.11427 7.82332 8.35420 9.18632 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.031872 B = 0.001794 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.307819 B =15604.729415 C =15861.819382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C -0.107 4.107 4 C -0.131 4.131 5 C -0.578 4.578 6 S 2.420 3.580 7 O -0.982 6.982 8 O -0.979 6.979 9 C -0.641 4.641 10 C 0.520 3.480 11 O -0.590 6.590 12 N -0.694 5.694 13 C 0.154 3.846 14 C -0.134 4.134 15 C 0.181 3.819 16 N -0.608 5.608 17 C -0.261 4.261 18 H 0.077 0.923 19 C -0.056 4.056 20 N -0.940 5.940 21 Si 0.970 3.030 22 H -0.259 1.259 23 H -0.295 1.295 24 H -0.293 1.293 25 C 0.139 3.861 26 C -0.120 4.120 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.212 0.788 39 H 0.207 0.793 40 H 0.424 0.576 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.055 0.945 45 H -0.014 1.014 46 H 0.249 0.751 47 H 0.009 0.991 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.267 -3.272 6.760 34.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.175 4.175 3 C -0.146 4.146 4 C -0.170 4.170 5 C -0.711 4.711 6 S 2.607 3.393 7 O -0.979 6.979 8 O -0.976 6.976 9 C -0.770 4.770 10 C 0.306 3.694 11 O -0.471 6.471 12 N -0.345 5.345 13 C 0.049 3.951 14 C -0.174 4.174 15 C 0.054 3.946 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.094 0.906 19 C -0.251 4.251 20 N -0.587 5.587 21 Si 0.798 3.202 22 H -0.183 1.183 23 H -0.222 1.222 24 H -0.220 1.220 25 C 0.013 3.987 26 C -0.159 4.159 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.194 0.806 37 H 0.191 0.809 38 H 0.229 0.771 39 H 0.224 0.776 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.004 0.996 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -31.981 -4.654 6.682 33.001 hybrid contribution 0.699 0.879 -0.815 1.388 sum -31.282 -3.775 5.867 32.051 Atomic orbital electron populations 1.21766 0.95045 1.01882 1.02258 1.21636 0.96638 0.97088 1.02098 1.21584 0.91844 0.97247 1.03929 1.21533 0.99179 0.92679 1.03589 1.30169 1.18609 1.06601 1.15728 1.07826 0.80197 0.77494 0.73778 1.93524 1.81302 1.75804 1.47287 1.93514 1.81232 1.75730 1.47156 1.30746 0.98905 1.29180 1.18138 1.20141 0.89853 0.83803 0.75587 1.90882 1.62835 1.41473 1.51948 1.45858 1.07783 1.07724 1.73177 1.20792 0.79692 0.98604 0.95988 1.22338 0.97841 1.00233 0.96972 1.20461 0.90397 0.86626 0.97105 1.44349 1.57126 1.19097 1.12628 1.19628 1.11401 0.88992 1.19072 0.90571 1.25911 0.97702 0.97992 1.03447 1.70224 1.33811 1.18013 1.36620 0.85163 0.77350 0.79325 0.78327 1.18340 1.22180 1.21968 1.21074 0.92373 0.99453 0.85823 1.22130 0.97341 0.94667 1.01747 0.92817 0.92199 0.92292 0.92292 0.92160 0.90025 0.90201 0.91075 0.90868 0.80637 0.80889 0.77115 0.77592 0.73784 0.92605 0.91289 0.93825 0.92611 0.99616 0.94210 0.97328 0.91067 0.88646 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.14 -1.19 5.93 30.59 0.18 -1.01 16 3 C -0.11 -0.71 5.21 30.59 0.16 -0.55 16 4 C -0.13 -1.37 5.22 30.59 0.16 -1.21 16 5 C -0.58 -3.13 5.81 71.98 0.42 -2.71 16 6 S 2.42 46.92 3.96 -56.49 -0.22 46.69 16 7 O -0.98 -29.92 17.95 -125.75 -2.26 -32.17 16 8 O -0.98 -28.76 17.95 -125.75 -2.26 -31.02 16 9 C -0.64 -7.38 6.29 71.24 0.45 -6.94 16 10 C 0.52 14.05 7.81 87.66 0.68 14.74 16 11 O -0.59 -23.89 15.29 -0.15 0.00 -23.90 16 12 N -0.69 -16.43 5.08 -442.36 -2.25 -18.68 16 13 C 0.15 5.17 2.41 45.03 0.11 5.28 16 14 C -0.13 -5.43 5.66 30.68 0.17 -5.25 16 15 C 0.18 9.32 5.30 86.36 0.46 9.78 16 16 N -0.61 -30.68 3.00 -699.11 -2.09 -32.77 16 17 C -0.26 -14.23 9.58 84.03 0.81 -13.43 16 18 H 0.08 3.93 7.89 -2.91 -0.02 3.91 16 19 C -0.06 -3.14 4.92 84.86 0.42 -2.72 16 20 N -0.94 -57.67 11.20 21.65 0.24 -57.42 16 21 Si 0.97 45.03 29.59 68.60 2.03 47.06 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 C 0.14 5.52 6.52 86.36 0.56 6.08 16 26 C -0.12 -3.49 5.55 30.67 0.17 -3.32 16 27 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.08 0.35 8.14 -2.39 -0.02 0.34 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.18 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.17 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.21 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.21 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.42 5.74 8.60 -92.70 -0.80 4.94 16 41 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 42 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 43 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.06 3.23 6.06 -2.38 -0.01 3.22 16 45 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 47 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.07 2.64 7.93 -2.39 -0.02 2.63 16 49 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -95.60 412.51 -1.24 -96.84 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.11 Total: 7.02 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.46 Total: -1.64 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.10 Total: -108.88 kcal Atomic # 8 Polarization: -82.57 SS G_CDS: -4.52 Total: -87.09 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 46.92 SS G_CDS: -0.22 Total: 46.69 kcal Total: -95.60 -1.24 -96.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.679 kcal (2) G-P(sol) polarization free energy of solvation -95.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds