Wall clock time and date at job start Sat Apr 11 2020 07:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46939 * 2 1 4 4 C 1.52998 * 110.88634 * 303.87998 * 3 2 1 5 5 C 1.55154 * 111.00330 * 179.97438 * 3 2 1 6 6 C 1.54329 * 102.94000 * 206.42674 * 5 3 2 7 7 N 1.47019 * 107.27394 * 22.18664 * 6 5 3 8 8 C 1.34771 * 125.64888 * 181.02170 * 7 6 5 9 9 O 1.21362 * 120.00045 * 180.02562 * 8 7 6 10 10 C 1.49348 * 120.00152 * 0.03030 * 8 7 6 11 11 O 1.21382 * 120.00214 * 0.02562 * 10 8 7 12 12 N 1.34780 * 120.00324 * 179.97438 * 10 8 7 13 13 C 1.39725 * 120.00329 * 185.31724 * 12 10 8 14 14 C 1.39020 * 120.04459 * 213.50896 * 13 12 10 15 15 C 1.38138 * 120.06515 * 179.97438 * 14 13 12 16 16 C 1.38179 * 120.14116 * 0.04593 * 15 14 13 17 17 C 1.38921 * 120.08378 * 359.69605 * 16 15 14 18 18 O 1.35753 * 120.03425 * 180.30140 * 17 16 15 19 19 C 1.34836 * 116.99852 * 6.06582 * 18 17 16 20 20 H 1.07998 * 119.99697 * 5.41162 * 19 18 17 21 21 C 1.38645 * 119.99871 * 185.41607 * 19 18 17 22 22 N 1.31555 * 120.00451 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47270 * 89.99881 * 23 21 19 25 25 H 1.48505 * 109.46752 * 209.99674 * 23 21 19 26 26 H 1.48498 * 109.47069 * 329.99564 * 23 21 19 27 27 C 1.38754 * 119.93799 * 0.53383 * 17 16 15 28 28 C 1.47426 * 108.70202 * 1.29328 * 7 6 5 29 29 H 1.09008 * 109.47123 * 60.00409 * 1 2 3 30 30 H 1.09003 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47728 * 299.99913 * 1 2 3 32 32 H 1.09000 * 109.47078 * 240.00173 * 2 1 3 33 33 H 1.08998 * 109.47010 * 119.99556 * 2 1 3 34 34 H 1.09002 * 109.47326 * 296.11805 * 4 3 2 35 35 H 1.09006 * 109.47260 * 56.11865 * 4 3 2 36 36 H 1.08995 * 109.47358 * 176.12032 * 4 3 2 37 37 H 1.09001 * 110.72063 * 88.06332 * 5 3 2 38 38 H 1.08997 * 110.71954 * 324.78402 * 5 3 2 39 39 H 1.09002 * 109.87559 * 262.77133 * 6 5 3 40 40 H 1.09001 * 109.88589 * 141.61018 * 6 5 3 41 41 H 0.96999 * 119.99740 * 5.32249 * 12 10 8 42 42 H 1.08006 * 119.96253 * 359.97388 * 14 13 12 43 43 H 1.07996 * 119.92789 * 180.02562 * 15 14 13 44 44 H 1.08005 * 119.95897 * 180.02562 * 16 15 14 45 45 H 0.97003 * 120.00695 * 179.97438 * 22 21 19 46 46 H 1.08003 * 120.07341 * 179.76620 * 27 17 16 47 47 H 1.08998 * 110.36730 * 94.48043 * 28 7 6 48 48 H 1.08999 * 110.36911 * 216.79993 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4705 2.2224 -1.1867 5 6 3.5909 1.4841 0.0006 6 6 3.9001 2.8399 0.6700 7 7 2.7201 3.2143 1.4631 8 6 2.5853 4.3443 2.1850 9 8 1.5621 4.5503 2.8043 10 6 3.6948 5.3433 2.2227 11 8 4.7180 5.1376 1.6028 12 7 3.5598 6.4736 2.9443 13 6 4.5495 7.4585 2.8917 14 6 4.8298 8.2245 4.0175 15 6 5.8085 9.1980 3.9661 16 6 6.5112 9.4143 2.7962 17 6 6.2398 8.6487 1.6692 18 8 6.9351 8.8580 0.5221 19 6 7.9585 9.7341 0.5778 20 1 8.2482 10.1665 1.5240 21 6 8.6388 10.0798 -0.5798 22 7 8.2862 9.5527 -1.7324 23 14 10.0562 11.2942 -0.5027 24 1 11.3258 10.5592 -0.2725 25 1 10.1406 12.0384 -1.7851 26 1 9.8289 12.2504 0.6105 27 6 5.2541 7.6733 1.7155 28 6 1.7115 2.1458 1.3432 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8318 1.7838 -2.1169 35 1 0.3816 2.1770 -1.1625 36 1 1.7922 3.2621 -1.1264 37 1 3.9778 1.4598 -1.0181 38 1 3.9985 0.6619 0.5888 39 1 4.0889 3.5952 -0.0928 40 1 4.7687 2.7424 1.3211 41 1 2.7755 6.6034 3.5001 42 1 4.2816 8.0582 4.9331 43 1 6.0247 9.7914 4.8421 44 1 7.2762 10.1759 2.7594 45 1 8.7619 9.7949 -2.5423 46 1 5.0387 7.0794 0.8395 47 1 1.8010 1.4448 2.1730 48 1 0.7088 2.5723 1.3123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759056011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:27 Heat of formation + Delta-G solvation = -65.527739 kcal Electronic energy + Delta-G solvation = -30115.385457 eV Core-core repulsion = 25943.289997 eV Total energy + Delta-G solvation = -4172.095460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.09000 -39.84470 -38.75329 -38.02464 -36.62889 -34.94989 -33.99890 -32.27127 -31.04948 -29.67952 -29.18095 -28.68384 -27.59462 -25.59776 -25.22669 -23.72629 -22.48092 -21.93192 -21.13731 -19.77606 -19.29934 -18.37315 -17.70062 -17.01896 -16.93767 -16.51310 -15.58034 -15.43626 -15.15932 -15.10735 -14.74574 -14.53947 -14.24789 -14.12264 -13.89077 -13.62785 -13.52766 -13.35895 -13.07806 -12.85703 -12.79937 -12.53682 -12.29876 -12.23925 -12.02535 -11.81039 -11.61945 -11.58829 -11.40623 -11.13106 -11.04694 -10.88600 -10.84167 -10.74490 -10.72136 -10.47303 -9.88331 -9.61059 -9.23962 -8.94095 -8.83514 -7.76665 -7.23343 -6.44627 -4.03658 1.27787 2.09374 2.27519 2.32496 3.12987 3.13776 3.18877 3.25541 3.42189 3.95170 4.02040 4.21502 4.37609 4.39029 4.55763 4.77400 4.83108 4.93510 5.04451 5.10683 5.12147 5.27272 5.27607 5.33426 5.40191 5.51917 5.58727 5.60878 5.65301 5.67164 5.72858 5.78081 5.79657 5.81121 5.92380 5.94338 6.04782 6.11496 6.15046 6.29939 6.55389 6.71419 6.95878 7.02079 7.05183 7.30452 7.37612 7.42234 7.66890 7.75338 7.99839 8.09315 9.00440 9.70531 10.73211 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.002393 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.401341 B =11699.343900 C =13248.280172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C -0.076 4.076 4 C -0.140 4.140 5 C -0.127 4.127 6 C 0.104 3.896 7 N -0.589 5.589 8 C 0.525 3.475 9 O -0.525 6.525 10 C 0.501 3.499 11 O -0.485 6.485 12 N -0.639 5.639 13 C 0.172 3.828 14 C -0.230 4.230 15 C -0.057 4.057 16 C -0.241 4.241 17 C 0.167 3.833 18 O -0.173 6.173 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.267 1.267 27 C -0.186 4.186 28 C 0.115 3.885 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.417 0.583 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.270 0.730 46 H 0.129 0.871 47 H 0.074 0.926 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 -16.497 4.890 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.077 4.077 4 C -0.197 4.197 5 C -0.165 4.165 6 C -0.018 4.018 7 N -0.323 5.323 8 C 0.308 3.692 9 O -0.402 6.402 10 C 0.282 3.718 11 O -0.357 6.357 12 N -0.285 5.285 13 C 0.080 3.920 14 C -0.251 4.251 15 C -0.076 4.076 16 C -0.261 4.261 17 C 0.112 3.888 18 O -0.076 6.076 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.207 4.207 28 C -0.007 4.007 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.254 0.746 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.147 0.853 45 H 0.080 0.920 46 H 0.147 0.853 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.650 -16.571 4.300 21.286 hybrid contribution 0.382 0.737 0.394 0.918 sum -12.268 -15.835 4.694 20.574 Atomic orbital electron populations 1.21882 0.95595 1.01737 1.02298 1.21452 0.96155 0.94216 1.02508 1.21853 0.95382 0.95760 0.94682 1.21828 1.01067 1.00216 0.96626 1.22866 0.94752 0.96827 1.02022 1.22265 0.87533 0.96620 0.95410 1.48200 1.18886 1.18336 1.46885 1.19780 0.87655 0.81760 0.79967 1.90752 1.29705 1.76386 1.43365 1.20005 0.87691 0.82839 0.81269 1.90851 1.28264 1.75671 1.40959 1.43022 1.23446 1.16212 1.45814 1.17152 0.91230 0.89813 0.93848 1.20294 1.04940 1.03366 0.96515 1.20521 0.94220 0.95986 0.96861 1.21218 1.06005 1.05022 0.93837 1.19082 0.90396 0.92062 0.87218 1.84002 1.39994 1.56035 1.27530 1.21338 1.07222 1.22402 0.95744 0.88982 1.25303 0.98992 0.98081 0.94154 1.70045 1.39804 1.41140 0.98521 0.85706 0.80008 0.79453 0.78215 1.19854 1.20270 1.19165 1.19985 1.01087 1.02012 0.97619 1.22504 0.92682 0.88501 0.96998 0.92157 0.92688 0.92545 0.91229 0.91568 0.91952 0.91898 0.92242 0.89472 0.90318 0.89788 0.90085 0.74591 0.87082 0.86811 0.85297 0.91993 0.85341 0.90811 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.35 37.16 0.35 -0.51 16 2 C -0.11 -0.60 5.07 -26.73 -0.14 -0.73 16 3 C -0.08 -0.56 0.66 -152.24 -0.10 -0.66 16 4 C -0.14 -1.09 8.24 37.16 0.31 -0.78 16 5 C -0.13 -0.99 5.92 -24.90 -0.15 -1.13 16 6 C 0.10 1.16 5.17 -3.06 -0.02 1.15 16 7 N -0.59 -7.15 3.31 -170.92 -0.57 -7.71 16 8 C 0.53 7.67 7.91 -11.64 -0.09 7.58 16 9 O -0.53 -8.27 16.74 5.49 0.09 -8.18 16 10 C 0.50 8.26 7.59 -11.63 -0.09 8.17 16 11 O -0.48 -9.18 11.81 5.47 0.06 -9.11 16 12 N -0.64 -10.23 5.32 -10.31 -0.05 -10.28 16 13 C 0.17 3.27 6.27 -83.77 -0.53 2.74 16 14 C -0.23 -3.98 9.96 -39.33 -0.39 -4.38 16 15 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 16 C -0.24 -5.24 9.13 -39.35 -0.36 -5.60 16 17 C 0.17 4.15 6.64 -39.14 -0.26 3.89 16 18 O -0.17 -5.02 9.76 0.02 0.00 -5.02 16 19 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 20 H 0.09 2.37 5.30 -52.49 -0.28 2.10 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 23 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.19 -4.20 8.60 -39.19 -0.34 -4.54 16 28 C 0.12 1.08 5.10 -2.41 -0.01 1.06 16 29 H 0.06 0.33 6.39 -51.92 -0.33 0.00 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.33 7.51 -51.93 -0.39 -0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.44 6.29 -51.93 -0.33 0.12 16 36 H 0.06 0.57 7.91 -51.93 -0.41 0.16 16 37 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 38 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 39 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 40 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 41 H 0.42 5.57 8.30 -40.82 -0.34 5.24 16 42 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.13 2.77 5.71 -52.48 -0.30 2.47 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.13 3.05 6.42 -52.48 -0.34 2.71 16 47 H 0.07 0.63 7.99 -51.93 -0.41 0.22 16 48 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -32.83 390.04 -7.70 -40.53 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.83 Total: 7.90 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.01 Total: -4.88 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.14 Total: -42.63 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.83 -7.70 -40.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759056011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.998 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds