Wall clock time and date at job start Sat Apr 11 2020 07:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46939 * 2 1 4 4 C 1.52998 * 110.88634 * 303.87998 * 3 2 1 5 5 C 1.55154 * 111.00330 * 179.97438 * 3 2 1 6 6 C 1.54329 * 102.94000 * 206.42674 * 5 3 2 7 7 N 1.47019 * 107.27394 * 22.18664 * 6 5 3 8 8 C 1.34771 * 125.64888 * 181.02170 * 7 6 5 9 9 O 1.21362 * 120.00045 * 180.02562 * 8 7 6 10 10 C 1.49348 * 120.00152 * 0.03030 * 8 7 6 11 11 O 1.21382 * 120.00214 * 0.02562 * 10 8 7 12 12 N 1.34780 * 120.00324 * 179.97438 * 10 8 7 13 13 C 1.39725 * 120.00329 * 185.31724 * 12 10 8 14 14 C 1.39020 * 120.04459 * 213.50896 * 13 12 10 15 15 C 1.38138 * 120.06515 * 179.97438 * 14 13 12 16 16 C 1.38179 * 120.14116 * 0.04593 * 15 14 13 17 17 C 1.38921 * 120.08378 * 359.69605 * 16 15 14 18 18 O 1.35753 * 120.03425 * 180.30140 * 17 16 15 19 19 C 1.34836 * 116.99852 * 6.06582 * 18 17 16 20 20 H 1.07998 * 119.99697 * 5.41162 * 19 18 17 21 21 C 1.38645 * 119.99871 * 185.41607 * 19 18 17 22 22 N 1.31555 * 120.00451 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47270 * 89.99881 * 23 21 19 25 25 H 1.48505 * 109.46752 * 209.99674 * 23 21 19 26 26 H 1.48498 * 109.47069 * 329.99564 * 23 21 19 27 27 C 1.38754 * 119.93799 * 0.53383 * 17 16 15 28 28 C 1.47426 * 108.70202 * 1.29328 * 7 6 5 29 29 H 1.09008 * 109.47123 * 60.00409 * 1 2 3 30 30 H 1.09003 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47728 * 299.99913 * 1 2 3 32 32 H 1.09000 * 109.47078 * 240.00173 * 2 1 3 33 33 H 1.08998 * 109.47010 * 119.99556 * 2 1 3 34 34 H 1.09002 * 109.47326 * 296.11805 * 4 3 2 35 35 H 1.09006 * 109.47260 * 56.11865 * 4 3 2 36 36 H 1.08995 * 109.47358 * 176.12032 * 4 3 2 37 37 H 1.09001 * 110.72063 * 88.06332 * 5 3 2 38 38 H 1.08997 * 110.71954 * 324.78402 * 5 3 2 39 39 H 1.09002 * 109.87559 * 262.77133 * 6 5 3 40 40 H 1.09001 * 109.88589 * 141.61018 * 6 5 3 41 41 H 0.96999 * 119.99740 * 5.32249 * 12 10 8 42 42 H 1.08006 * 119.96253 * 359.97388 * 14 13 12 43 43 H 1.07996 * 119.92789 * 180.02562 * 15 14 13 44 44 H 1.08005 * 119.95897 * 180.02562 * 16 15 14 45 45 H 0.97003 * 120.00695 * 179.97438 * 22 21 19 46 46 H 1.08003 * 120.07341 * 179.76620 * 27 17 16 47 47 H 1.08998 * 110.36730 * 94.48043 * 28 7 6 48 48 H 1.08999 * 110.36911 * 216.79993 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4705 2.2224 -1.1867 5 6 3.5909 1.4841 0.0006 6 6 3.9001 2.8399 0.6700 7 7 2.7201 3.2143 1.4631 8 6 2.5853 4.3443 2.1850 9 8 1.5621 4.5503 2.8043 10 6 3.6948 5.3433 2.2227 11 8 4.7180 5.1376 1.6028 12 7 3.5598 6.4736 2.9443 13 6 4.5495 7.4585 2.8917 14 6 4.8298 8.2245 4.0175 15 6 5.8085 9.1980 3.9661 16 6 6.5112 9.4143 2.7962 17 6 6.2398 8.6487 1.6692 18 8 6.9351 8.8580 0.5221 19 6 7.9585 9.7341 0.5778 20 1 8.2482 10.1665 1.5240 21 6 8.6388 10.0798 -0.5798 22 7 8.2862 9.5527 -1.7324 23 14 10.0562 11.2942 -0.5027 24 1 11.3258 10.5592 -0.2725 25 1 10.1406 12.0384 -1.7851 26 1 9.8289 12.2504 0.6105 27 6 5.2541 7.6733 1.7155 28 6 1.7115 2.1458 1.3432 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8318 1.7838 -2.1169 35 1 0.3816 2.1770 -1.1625 36 1 1.7922 3.2621 -1.1264 37 1 3.9778 1.4598 -1.0181 38 1 3.9985 0.6619 0.5888 39 1 4.0889 3.5952 -0.0928 40 1 4.7687 2.7424 1.3211 41 1 2.7755 6.6034 3.5001 42 1 4.2816 8.0582 4.9331 43 1 6.0247 9.7914 4.8421 44 1 7.2762 10.1759 2.7594 45 1 8.7619 9.7949 -2.5423 46 1 5.0387 7.0794 0.8395 47 1 1.8010 1.4448 2.1730 48 1 0.7088 2.5723 1.3123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759056011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:26 Heat of formation + Delta-G solvation = -87.110785 kcal Electronic energy + Delta-G solvation = -30116.321368 eV Core-core repulsion = 25943.289997 eV Total energy + Delta-G solvation = -4173.031371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.31646 -41.10502 -40.26223 -39.23056 -38.30181 -36.03025 -35.25592 -34.26945 -31.79576 -31.33467 -30.32503 -29.86960 -28.47753 -27.37515 -26.40868 -24.82043 -23.52580 -23.22806 -22.69987 -21.07772 -20.06860 -20.00926 -19.20545 -18.55672 -18.15961 -17.59590 -17.05574 -16.81447 -16.67727 -16.09598 -15.97375 -15.90922 -15.65306 -15.47946 -15.29115 -14.76495 -14.56458 -14.42571 -14.32379 -14.13485 -13.86787 -13.62810 -13.54880 -13.30978 -13.09785 -13.01152 -12.83034 -12.73349 -12.67784 -12.60608 -12.36266 -12.12279 -12.00865 -11.50324 -11.45933 -11.42660 -11.37487 -11.29303 -10.78835 -10.71199 -9.96283 -9.42270 -8.95456 -8.47200 -6.16456 -0.08612 0.58923 0.67522 1.05208 1.35627 1.45534 1.53854 1.94361 2.15738 2.27816 2.80452 3.01134 3.15219 3.38648 3.48879 3.53540 3.76222 4.08221 4.14731 4.17251 4.22244 4.32458 4.36209 4.44478 4.53156 4.55543 4.62628 4.65048 4.66849 4.76709 4.82170 4.87275 4.92810 4.99962 5.05958 5.09683 5.10495 5.13725 5.21347 5.24299 5.27782 5.32412 5.40501 5.56704 5.58924 5.69295 5.86908 6.01182 6.05330 6.12043 6.50758 6.76880 6.96676 7.77167 8.76332 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.002393 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.401341 B =11699.343900 C =13248.280172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.099 4.099 3 C -0.067 4.067 4 C -0.140 4.140 5 C -0.118 4.118 6 C 0.101 3.899 7 N -0.583 5.583 8 C 0.527 3.473 9 O -0.538 6.538 10 C 0.498 3.502 11 O -0.514 6.514 12 N -0.629 5.629 13 C 0.178 3.822 14 C -0.201 4.201 15 C -0.045 4.045 16 C -0.248 4.248 17 C 0.130 3.870 18 O -0.231 6.231 19 C -0.413 4.413 20 H 0.107 0.893 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.022 2.978 24 H -0.264 1.264 25 H -0.272 1.272 26 H -0.248 1.248 27 C -0.207 4.207 28 C 0.110 3.890 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.032 0.968 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.433 0.567 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.127 0.873 45 H 0.273 0.727 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.781 -17.345 7.806 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.137 4.137 3 C -0.068 4.068 4 C -0.198 4.198 5 C -0.155 4.155 6 C -0.021 4.021 7 N -0.316 5.316 8 C 0.310 3.690 9 O -0.416 6.416 10 C 0.280 3.720 11 O -0.389 6.389 12 N -0.277 5.277 13 C 0.084 3.916 14 C -0.221 4.221 15 C -0.064 4.064 16 C -0.268 4.268 17 C 0.078 3.922 18 O -0.138 6.138 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.223 4.223 22 N -0.560 5.560 23 Si 0.841 3.159 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.172 1.172 27 C -0.229 4.229 28 C -0.011 4.011 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.273 0.727 42 H 0.179 0.821 43 H 0.181 0.819 44 H 0.145 0.855 45 H 0.082 0.918 46 H 0.120 0.880 47 H 0.108 0.892 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.622 -17.460 7.270 23.308 hybrid contribution 0.427 0.843 -0.302 0.992 sum -13.195 -16.617 6.969 22.333 Atomic orbital electron populations 1.21888 0.95413 1.02269 1.02019 1.21432 0.96228 0.92511 1.03534 1.21846 0.94896 0.96827 0.93218 1.21838 1.01647 0.98781 0.97486 1.22879 0.95233 0.94967 1.02458 1.22303 0.87088 0.98075 0.94678 1.48334 1.19799 1.17952 1.45489 1.19346 0.86827 0.82140 0.80717 1.90742 1.29699 1.76782 1.44388 1.20503 0.87863 0.83240 0.80395 1.90855 1.29699 1.76399 1.41911 1.42955 1.23382 1.15423 1.45916 1.17280 0.90931 0.90261 0.93127 1.20899 1.03363 1.00750 0.97102 1.21044 0.92732 0.95822 0.96769 1.21384 1.06570 1.04601 0.94231 1.19586 0.91388 0.93665 0.87528 1.83965 1.41749 1.58057 1.29989 1.21885 1.07750 1.22460 0.96750 0.87617 1.26675 1.02068 1.00132 0.93386 1.70207 1.42293 1.43987 0.99560 0.84547 0.75769 0.76768 0.78850 1.18872 1.19704 1.17183 1.19987 1.02233 1.02113 0.98547 1.22785 0.91628 0.87864 0.98812 0.92319 0.91770 0.92996 0.90129 0.90618 0.90814 0.91128 0.94856 0.88533 0.88385 0.92208 0.91097 0.72678 0.82075 0.81947 0.85519 0.91846 0.88049 0.89221 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.35 71.98 0.67 -0.70 16 2 C -0.10 -0.85 5.07 30.59 0.15 -0.70 16 3 C -0.07 -0.89 0.66 -50.71 -0.03 -0.92 16 4 C -0.14 -2.08 8.24 71.98 0.59 -1.49 16 5 C -0.12 -1.69 5.92 31.78 0.19 -1.50 16 6 C 0.10 2.32 5.17 86.73 0.45 2.77 16 7 N -0.58 -14.15 3.31 -813.04 -2.69 -16.85 16 8 C 0.53 15.42 7.91 87.24 0.69 16.11 16 9 O -0.54 -16.49 16.74 -3.28 -0.05 -16.55 16 10 C 0.50 16.74 7.59 87.24 0.66 17.40 16 11 O -0.51 -20.60 11.81 -3.35 -0.04 -20.63 16 12 N -0.63 -19.57 5.32 -304.88 -1.62 -21.19 16 13 C 0.18 6.57 6.27 38.20 0.24 6.81 16 14 C -0.20 -6.15 9.96 22.43 0.22 -5.92 16 15 C -0.05 -1.47 10.03 22.23 0.22 -1.25 16 16 C -0.25 -10.72 9.13 22.42 0.20 -10.52 16 17 C 0.13 6.75 6.64 22.56 0.15 6.90 16 18 O -0.23 -14.47 9.76 -22.84 -0.22 -14.69 16 19 C -0.41 -24.39 9.44 67.92 0.64 -23.75 16 20 H 0.11 5.64 5.30 -2.91 -0.02 5.62 16 21 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 22 N -0.92 -57.92 13.67 21.61 0.30 -57.63 16 23 Si 1.02 43.18 29.55 68.60 2.03 45.20 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 27 C -0.21 -9.85 8.60 22.52 0.19 -9.65 16 28 C 0.11 1.92 5.10 86.93 0.44 2.36 16 29 H 0.06 0.53 6.39 -2.38 -0.02 0.51 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.50 7.51 -2.39 -0.02 0.48 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.55 8.07 -2.39 -0.02 0.53 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.93 6.29 -2.38 -0.02 0.92 16 36 H 0.03 0.66 7.91 -2.39 -0.02 0.64 16 37 H 0.10 1.25 8.05 -2.39 -0.02 1.23 16 38 H 0.10 1.08 8.04 -2.39 -0.02 1.06 16 39 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 40 H 0.07 1.78 7.69 -2.39 -0.02 1.76 16 41 H 0.43 10.63 8.30 -92.71 -0.77 9.86 16 42 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 43 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.13 5.45 5.71 -2.91 -0.02 5.44 16 45 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.10 5.28 6.42 -2.91 -0.02 5.26 16 47 H 0.09 1.33 7.99 -2.39 -0.02 1.32 16 48 H 0.08 1.47 7.89 -2.39 -0.02 1.46 16 Total: -1.00 -78.91 390.04 4.08 -74.83 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.23 Total: 32.54 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 6.16 Total: -5.03 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -4.02 Total: -95.66 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.32 Total: -51.87 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -78.91 4.08 -74.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759056011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.283 kcal (2) G-P(sol) polarization free energy of solvation -78.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds