Wall clock time and date at job start Sat Apr 11 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46906 * 2 1 4 4 C 1.50697 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.38303 * 119.92443 * 89.99617 * 4 3 2 6 6 C 1.38088 * 120.07786 * 180.02562 * 5 4 3 7 7 C 1.38940 * 119.92381 * 359.97438 * 6 5 4 8 8 N 1.39718 * 120.07462 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00171 * 35.10506 * 8 7 6 10 10 O 1.21375 * 119.99825 * 355.38089 * 9 8 7 11 11 C 1.49349 * 120.00262 * 175.37311 * 9 8 7 12 12 O 1.21363 * 120.00162 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00262 * 179.97438 * 11 9 8 14 14 C 1.47025 * 125.64483 * 0.02562 * 13 11 9 15 15 C 1.54323 * 107.26733 * 181.03673 * 14 13 11 16 16 C 1.55162 * 102.94387 * 22.19715 * 15 14 13 17 17 O 1.42895 * 111.00100 * 82.56980 * 16 15 14 18 18 C 1.50704 * 111.00159 * 206.42209 * 16 15 14 19 19 H 1.07998 * 120.00082 * 353.64810 * 18 16 15 20 20 C 1.37876 * 119.99567 * 173.64834 * 18 16 15 21 21 N 1.31519 * 119.99968 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99779 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47149 * 90.00208 * 22 20 18 24 24 H 1.48497 * 109.47044 * 210.00112 * 22 20 18 25 25 H 1.48507 * 109.46986 * 330.00006 * 22 20 18 26 26 C 1.47418 * 125.65059 * 180.02562 * 13 11 9 27 27 C 1.38929 * 119.84375 * 0.26186 * 7 6 5 28 28 C 1.38098 * 119.92581 * 359.50628 * 27 7 6 29 29 H 1.08994 * 109.47275 * 300.00208 * 1 2 3 30 30 H 1.09004 * 109.46848 * 60.00082 * 1 2 3 31 31 H 1.08998 * 109.46658 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47102 * 240.00130 * 2 1 3 33 33 H 1.08995 * 109.46975 * 120.00132 * 2 1 3 34 34 H 1.08994 * 109.47323 * 59.99821 * 3 2 1 35 35 H 1.09004 * 109.47300 * 299.99642 * 3 2 1 36 36 H 1.07999 * 119.96028 * 0.02604 * 5 4 3 37 37 H 1.07991 * 120.04156 * 179.97438 * 6 5 4 38 38 H 0.97000 * 120.00082 * 215.09450 * 8 7 6 39 39 H 1.08991 * 109.88573 * 300.45540 * 14 13 11 40 40 H 1.09000 * 109.87942 * 61.62529 * 14 13 11 41 41 H 1.09001 * 110.71523 * 140.55936 * 15 14 13 42 42 H 1.08996 * 110.72326 * 263.65007 * 15 14 13 43 43 H 0.96703 * 113.99468 * 186.34692 * 17 16 15 44 44 H 0.97001 * 119.99502 * 180.02562 * 21 20 18 45 45 H 1.09005 * 110.36849 * 274.72864 * 26 13 11 46 46 H 1.09004 * 110.37133 * 37.05229 * 26 13 11 47 47 H 1.08008 * 120.03341 * 179.72280 * 27 7 6 48 48 H 1.08003 * 119.95971 * 180.21275 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2374 1.4424 -1.1977 6 6 5.6183 1.4419 -1.2008 7 6 6.3141 1.4422 0.0018 8 7 7.7113 1.4412 0.0023 9 6 8.3861 2.1113 -0.9528 10 8 7.7829 2.6454 -1.8606 11 6 9.8760 2.1968 -0.8940 12 8 10.4792 1.6625 0.0135 13 7 10.5508 2.8665 -1.8494 14 6 9.9488 3.5564 -2.9997 15 6 11.1035 4.1541 -3.8310 16 6 12.3196 3.2870 -3.4104 17 8 12.3535 2.0618 -4.1450 18 6 13.6092 4.0492 -3.5753 19 1 13.6047 5.0239 -4.0403 20 6 14.7947 3.5019 -3.1325 21 7 14.8001 2.3147 -2.5668 22 14 16.3933 4.4463 -3.3376 23 1 16.6249 5.2933 -2.1401 24 1 17.5177 3.4885 -3.4914 25 1 16.3081 5.3076 -4.5443 26 6 12.0146 3.0285 -1.9140 27 6 5.6173 1.4374 1.2037 28 6 4.2364 1.4428 1.1994 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.6960 1.4426 -2.1322 37 1 6.1568 1.4413 -2.1369 38 1 8.1957 0.9583 0.6901 39 1 9.3854 2.8462 -3.6047 40 1 9.2916 4.3533 -2.6516 41 1 10.9053 4.0489 -4.8977 42 1 11.2642 5.2004 -3.5715 43 1 13.0376 1.4452 -3.8500 44 1 15.6342 1.9299 -2.2550 45 1 12.3291 3.8800 -1.3104 46 1 12.5122 2.1192 -1.5770 47 1 6.1551 1.4331 2.1403 48 1 3.6941 1.4426 2.1335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832794240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:52 Heat of formation + Delta-G solvation = -97.278814 kcal Electronic energy + Delta-G solvation = -29837.271643 eV Core-core repulsion = 25663.799353 eV Total energy + Delta-G solvation = -4173.472289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.94533 -39.55482 -38.38246 -37.27691 -35.94215 -34.51840 -33.95841 -32.28711 -31.10631 -30.47032 -30.27919 -27.98853 -26.84746 -25.65921 -24.00641 -23.13060 -22.53619 -21.75861 -20.84336 -19.85488 -19.55883 -17.94116 -17.21787 -17.16967 -16.32535 -16.06894 -15.80444 -15.51833 -15.17928 -14.75595 -14.66780 -14.46987 -14.14911 -14.12927 -13.86192 -13.53284 -13.13702 -13.09271 -13.06868 -12.88822 -12.50466 -12.36363 -12.34476 -11.74039 -11.64874 -11.57745 -11.46080 -11.26282 -11.08687 -11.04910 -10.92861 -10.83757 -10.63508 -10.51490 -10.30631 -10.23893 -9.42554 -9.27664 -9.04003 -8.74307 -8.46959 -8.19790 -7.97272 -6.33286 -4.42903 0.98075 1.26453 1.75502 2.49707 3.18013 3.26026 3.28989 3.40299 3.65969 3.76922 4.22930 4.49450 4.52766 4.58870 4.76568 4.79420 4.86241 4.94380 5.12670 5.13699 5.23300 5.37862 5.43240 5.47058 5.50209 5.51066 5.69484 5.73846 5.77946 5.81547 5.87303 5.96251 5.99946 6.12937 6.16470 6.22117 6.34755 6.46392 6.47410 6.68701 6.71260 6.78867 6.87014 7.07417 7.14867 7.26406 7.68701 7.73391 7.93324 7.96356 8.31835 8.61468 9.24156 9.32774 10.73973 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.001932 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.074059 B =14490.540639 C =14900.739195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.100 4.100 5 C -0.098 4.098 6 C -0.117 4.117 7 C 0.142 3.858 8 N -0.651 5.651 9 C 0.511 3.489 10 O -0.496 6.496 11 C 0.510 3.490 12 O -0.535 6.535 13 N -0.571 5.571 14 C 0.109 3.891 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.581 6.581 18 C -0.537 4.537 19 H 0.069 0.931 20 C 0.071 3.929 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.092 3.908 27 C -0.140 4.140 28 C -0.100 4.100 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.422 0.578 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.381 0.619 44 H 0.271 0.729 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.127 0.873 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.535 -2.933 6.474 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.115 4.115 4 C -0.101 4.101 5 C -0.117 4.117 6 C -0.137 4.137 7 C 0.048 3.952 8 N -0.298 5.298 9 C 0.294 3.706 10 O -0.369 6.369 11 C 0.291 3.709 12 O -0.414 6.414 13 N -0.303 5.303 14 C -0.013 4.013 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.389 6.389 18 C -0.575 4.575 19 H 0.087 0.913 20 C -0.132 4.132 21 N -0.532 5.532 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.029 4.029 27 C -0.160 4.160 28 C -0.118 4.118 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.231 0.769 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.145 0.855 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.973 -2.681 6.084 23.916 hybrid contribution 1.678 -0.026 0.711 1.822 sum -21.296 -2.707 6.795 22.517 Atomic orbital electron populations 1.21795 0.95777 1.01670 1.01813 1.21524 0.95544 0.96186 1.02464 1.20600 0.90835 0.97276 1.02828 1.19885 0.95679 1.01387 0.93137 1.20930 0.93446 0.99673 0.97658 1.21340 0.94218 1.00202 0.97929 1.17785 0.81990 1.01049 0.94350 1.43185 1.04728 1.50878 1.31047 1.20622 0.89386 0.78561 0.82066 1.90729 1.69807 1.43915 1.32490 1.19320 0.86745 0.81414 0.83388 1.90746 1.69356 1.46870 1.34434 1.48684 1.10358 1.48254 1.23020 1.22186 0.96070 0.96148 0.86914 1.22709 0.94219 0.99358 0.99619 1.19638 0.91957 0.82870 0.84754 1.86133 1.60120 1.30348 1.62320 1.21461 0.91136 1.04322 1.40630 0.91330 1.25091 0.99707 0.94963 0.93478 1.69709 1.28256 1.15864 1.39394 0.86377 0.82096 0.79586 0.78713 1.20405 1.20976 1.19640 1.23533 0.74626 1.02839 1.01872 1.20926 0.94533 1.04057 0.96484 1.20773 0.93112 1.00288 0.97643 0.92755 0.92692 0.92726 0.91797 0.91872 0.91138 0.91055 0.85773 0.84160 0.74015 0.91078 0.91634 0.90463 0.90280 0.76912 0.91930 0.91279 0.88989 0.85516 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.77 5.92 -26.73 -0.16 -0.92 16 3 C -0.08 -0.54 5.34 -27.89 -0.15 -0.69 16 4 C -0.10 -0.93 5.14 -104.58 -0.54 -1.47 16 5 C -0.10 -1.04 9.69 -39.61 -0.38 -1.42 16 6 C -0.12 -1.50 8.70 -39.38 -0.34 -1.84 16 7 C 0.14 1.80 6.30 -83.75 -0.53 1.28 16 8 N -0.65 -8.93 5.32 -10.30 -0.05 -8.98 16 9 C 0.51 8.56 7.70 -11.63 -0.09 8.47 16 10 O -0.50 -8.72 11.55 5.47 0.06 -8.66 16 11 C 0.51 10.02 7.91 -11.63 -0.09 9.93 16 12 O -0.54 -11.44 16.74 5.49 0.09 -11.34 16 13 N -0.57 -11.85 3.33 -171.08 -0.57 -12.42 16 14 C 0.11 2.06 5.49 -3.06 -0.02 2.05 16 15 C -0.12 -2.42 6.13 -24.89 -0.15 -2.57 16 16 C 0.25 5.90 0.87 -89.63 -0.08 5.82 16 17 O -0.58 -14.53 13.16 -35.23 -0.46 -14.99 16 18 C -0.54 -13.68 8.27 -34.44 -0.28 -13.96 16 19 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 21 N -0.89 -23.22 10.69 55.43 0.59 -22.63 16 22 Si 0.91 19.97 29.54 -169.99 -5.02 14.95 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 26 C 0.09 2.14 5.38 -2.54 -0.01 2.13 16 27 C -0.14 -1.45 9.97 -39.38 -0.39 -1.84 16 28 C -0.10 -0.91 9.69 -39.61 -0.38 -1.30 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.14 2.00 6.22 -52.49 -0.33 1.67 16 38 H 0.42 5.13 8.30 -40.82 -0.34 4.79 16 39 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 40 H 0.07 1.14 7.69 -51.93 -0.40 0.74 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 43 H 0.38 9.71 7.57 45.56 0.34 10.05 16 44 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 46 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 47 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 48 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -28.45 395.37 -9.25 -37.70 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.52 Total: 15.50 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -3.33 Total: 4.92 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.03 Total: -44.03 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.31 Total: -34.99 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.45 -9.25 -37.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832794240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.577 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds