Wall clock time and date at job start Sat Apr 11 2020 07:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46906 * 2 1 4 4 C 1.50697 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.38303 * 119.92443 * 89.99617 * 4 3 2 6 6 C 1.38088 * 120.07786 * 180.02562 * 5 4 3 7 7 C 1.38940 * 119.92381 * 359.97438 * 6 5 4 8 8 N 1.39718 * 120.07462 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00171 * 35.10506 * 8 7 6 10 10 O 1.21375 * 119.99825 * 355.38089 * 9 8 7 11 11 C 1.49349 * 120.00262 * 175.37311 * 9 8 7 12 12 O 1.21363 * 120.00162 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00262 * 179.97438 * 11 9 8 14 14 C 1.47025 * 125.64483 * 0.02562 * 13 11 9 15 15 C 1.54323 * 107.26733 * 181.03673 * 14 13 11 16 16 C 1.55162 * 102.94387 * 22.19715 * 15 14 13 17 17 O 1.42895 * 111.00100 * 82.56980 * 16 15 14 18 18 C 1.50704 * 111.00159 * 206.42209 * 16 15 14 19 19 H 1.07998 * 120.00082 * 353.64810 * 18 16 15 20 20 C 1.37876 * 119.99567 * 173.64834 * 18 16 15 21 21 N 1.31519 * 119.99968 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99779 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47149 * 90.00208 * 22 20 18 24 24 H 1.48497 * 109.47044 * 210.00112 * 22 20 18 25 25 H 1.48507 * 109.46986 * 330.00006 * 22 20 18 26 26 C 1.47418 * 125.65059 * 180.02562 * 13 11 9 27 27 C 1.38929 * 119.84375 * 0.26186 * 7 6 5 28 28 C 1.38098 * 119.92581 * 359.50628 * 27 7 6 29 29 H 1.08994 * 109.47275 * 300.00208 * 1 2 3 30 30 H 1.09004 * 109.46848 * 60.00082 * 1 2 3 31 31 H 1.08998 * 109.46658 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47102 * 240.00130 * 2 1 3 33 33 H 1.08995 * 109.46975 * 120.00132 * 2 1 3 34 34 H 1.08994 * 109.47323 * 59.99821 * 3 2 1 35 35 H 1.09004 * 109.47300 * 299.99642 * 3 2 1 36 36 H 1.07999 * 119.96028 * 0.02604 * 5 4 3 37 37 H 1.07991 * 120.04156 * 179.97438 * 6 5 4 38 38 H 0.97000 * 120.00082 * 215.09450 * 8 7 6 39 39 H 1.08991 * 109.88573 * 300.45540 * 14 13 11 40 40 H 1.09000 * 109.87942 * 61.62529 * 14 13 11 41 41 H 1.09001 * 110.71523 * 140.55936 * 15 14 13 42 42 H 1.08996 * 110.72326 * 263.65007 * 15 14 13 43 43 H 0.96703 * 113.99468 * 186.34692 * 17 16 15 44 44 H 0.97001 * 119.99502 * 180.02562 * 21 20 18 45 45 H 1.09005 * 110.36849 * 274.72864 * 26 13 11 46 46 H 1.09004 * 110.37133 * 37.05229 * 26 13 11 47 47 H 1.08008 * 120.03341 * 179.72280 * 27 7 6 48 48 H 1.08003 * 119.95971 * 180.21275 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2374 1.4424 -1.1977 6 6 5.6183 1.4419 -1.2008 7 6 6.3141 1.4422 0.0018 8 7 7.7113 1.4412 0.0023 9 6 8.3861 2.1113 -0.9528 10 8 7.7829 2.6454 -1.8606 11 6 9.8760 2.1968 -0.8940 12 8 10.4792 1.6625 0.0135 13 7 10.5508 2.8665 -1.8494 14 6 9.9488 3.5564 -2.9997 15 6 11.1035 4.1541 -3.8310 16 6 12.3196 3.2870 -3.4104 17 8 12.3535 2.0618 -4.1450 18 6 13.6092 4.0492 -3.5753 19 1 13.6047 5.0239 -4.0403 20 6 14.7947 3.5019 -3.1325 21 7 14.8001 2.3147 -2.5668 22 14 16.3933 4.4463 -3.3376 23 1 16.6249 5.2933 -2.1401 24 1 17.5177 3.4885 -3.4914 25 1 16.3081 5.3076 -4.5443 26 6 12.0146 3.0285 -1.9140 27 6 5.6173 1.4374 1.2037 28 6 4.2364 1.4428 1.1994 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.6960 1.4426 -2.1322 37 1 6.1568 1.4413 -2.1369 38 1 8.1957 0.9583 0.6901 39 1 9.3854 2.8462 -3.6047 40 1 9.2916 4.3533 -2.6516 41 1 10.9053 4.0489 -4.8977 42 1 11.2642 5.2004 -3.5715 43 1 13.0376 1.4452 -3.8500 44 1 15.6342 1.9299 -2.2550 45 1 12.3291 3.8800 -1.3104 46 1 12.5122 2.1192 -1.5770 47 1 6.1551 1.4331 2.1403 48 1 3.6941 1.4426 2.1335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832794240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:51 Heat of formation + Delta-G solvation = -114.945252 kcal Electronic energy + Delta-G solvation = -29838.037717 eV Core-core repulsion = 25663.799353 eV Total energy + Delta-G solvation = -4174.238364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.22822 -40.80283 -39.64360 -38.94069 -36.92677 -36.06046 -34.95052 -34.25596 -32.02656 -31.89934 -31.23601 -29.73887 -28.04560 -27.03343 -25.41798 -24.08439 -23.70045 -22.66612 -21.66946 -21.53386 -20.97739 -19.29601 -19.02995 -18.44256 -17.76621 -17.41457 -17.11806 -16.60813 -16.53410 -16.25114 -16.04674 -15.72482 -15.18368 -15.02338 -14.85930 -14.70104 -14.69449 -14.44604 -14.30600 -13.99998 -13.80241 -13.54220 -13.35288 -13.29503 -12.88498 -12.85140 -12.75467 -12.56830 -12.38412 -12.26769 -12.22343 -12.12610 -12.00655 -11.86390 -11.45651 -11.27605 -11.22898 -10.77012 -10.61080 -10.36375 -9.89051 -9.71841 -9.09656 -8.26491 -6.43330 -0.09229 0.44521 0.52997 1.14708 1.43148 1.45793 1.55199 1.98461 2.34033 2.42677 2.78655 2.99639 3.15394 3.73976 3.87706 3.89391 4.02383 4.04884 4.11613 4.20196 4.28953 4.30184 4.44091 4.47856 4.49835 4.61795 4.64411 4.70986 4.83801 4.93560 4.95607 5.03460 5.06386 5.08683 5.09724 5.19486 5.25869 5.30617 5.33568 5.34406 5.41571 5.43563 5.51685 5.71929 5.73109 5.90227 6.03647 6.04330 6.28687 6.52713 6.65316 6.78504 7.25071 7.33577 8.79234 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.001932 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.074059 B =14490.540639 C =14900.739195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.076 4.076 4 C -0.093 4.093 5 C -0.105 4.105 6 C -0.135 4.135 7 C 0.114 3.886 8 N -0.635 5.635 9 C 0.517 3.483 10 O -0.507 6.507 11 C 0.506 3.494 12 O -0.557 6.557 13 N -0.580 5.580 14 C 0.117 3.883 15 C -0.115 4.115 16 C 0.233 3.767 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.070 0.930 20 C 0.029 3.971 21 N -0.914 5.914 22 Si 0.965 3.035 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.267 1.267 26 C 0.107 3.893 27 C -0.135 4.135 28 C -0.098 4.098 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.428 0.572 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.374 0.626 44 H 0.271 0.729 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.146 0.854 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.820 -2.217 7.337 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.113 4.113 4 C -0.094 4.094 5 C -0.124 4.124 6 C -0.155 4.155 7 C 0.021 3.979 8 N -0.282 5.282 9 C 0.299 3.701 10 O -0.381 6.381 11 C 0.289 3.711 12 O -0.437 6.437 13 N -0.312 5.312 14 C -0.004 4.004 15 C -0.153 4.153 16 C 0.192 3.808 17 O -0.395 6.395 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.172 4.172 21 N -0.553 5.553 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.192 1.192 26 C -0.015 4.015 27 C -0.155 4.155 28 C -0.116 4.116 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.267 0.733 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.223 0.777 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.164 0.836 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.306 -1.971 6.958 26.319 hybrid contribution 2.264 -0.310 0.498 2.339 sum -23.042 -2.282 7.456 24.325 Atomic orbital electron populations 1.21780 0.94894 1.01986 1.02248 1.21497 0.96285 0.95651 1.02103 1.20650 0.88979 0.97834 1.03832 1.20219 0.97071 0.99423 0.92677 1.21114 0.92638 0.99583 0.99040 1.21298 0.95273 1.01636 0.97281 1.17992 0.81063 1.03493 0.95391 1.43025 1.05459 1.49704 1.30032 1.19951 0.87750 0.79442 0.82934 1.90726 1.69374 1.44938 1.33102 1.19903 0.88254 0.80374 0.82554 1.90720 1.70345 1.47490 1.35186 1.48703 1.09423 1.49045 1.23990 1.22199 0.95642 0.96455 0.86141 1.22719 0.92737 0.99439 1.00368 1.19865 0.93174 0.82707 0.85022 1.86126 1.59825 1.30826 1.62697 1.21757 0.92183 1.04633 1.40838 0.91164 1.25803 1.02543 0.95712 0.93180 1.69818 1.28775 1.16914 1.39815 0.85442 0.78484 0.78342 0.78686 1.20078 1.20973 1.19170 1.23090 0.76270 1.00673 1.01480 1.21182 0.95209 1.02853 0.96270 1.21155 0.92701 0.98938 0.98848 0.92083 0.92509 0.92528 0.92597 0.91866 0.89699 0.90554 0.84501 0.86239 0.73281 0.91061 0.89661 0.89603 0.88848 0.77678 0.92007 0.92386 0.92154 0.83614 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.22 5.92 30.60 0.18 -1.04 16 3 C -0.08 -0.83 5.34 29.85 0.16 -0.67 16 4 C -0.09 -1.50 5.14 -19.84 -0.10 -1.60 16 5 C -0.11 -2.09 9.69 22.25 0.22 -1.87 16 6 C -0.13 -3.42 8.70 22.40 0.19 -3.22 16 7 C 0.11 2.78 6.30 38.22 0.24 3.02 16 8 N -0.64 -17.22 5.32 -304.84 -1.62 -18.84 16 9 C 0.52 17.38 7.70 87.24 0.67 18.05 16 10 O -0.51 -17.78 11.55 -3.33 -0.04 -17.82 16 11 C 0.51 20.24 7.91 87.24 0.69 20.93 16 12 O -0.56 -24.40 16.74 -3.29 -0.06 -24.46 16 13 N -0.58 -24.42 3.33 -813.53 -2.71 -27.12 16 14 C 0.12 4.37 5.49 86.73 0.48 4.85 16 15 C -0.11 -4.52 6.13 31.78 0.19 -4.33 16 16 C 0.23 11.21 0.87 -10.15 -0.01 11.20 16 17 O -0.59 -30.04 13.16 -148.98 -1.96 -32.00 16 18 C -0.56 -28.49 8.27 25.60 0.21 -28.28 16 19 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 20 C 0.03 1.48 5.29 84.65 0.45 1.93 16 21 N -0.91 -48.59 10.69 21.45 0.23 -48.36 16 22 Si 0.97 41.03 29.54 68.60 2.03 43.06 16 23 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 C 0.11 5.13 5.38 86.85 0.47 5.60 16 27 C -0.14 -2.51 9.97 22.40 0.22 -2.28 16 28 C -0.10 -1.50 9.69 22.25 0.22 -1.28 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.08 0.79 8.08 -2.38 -0.02 0.77 16 36 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.12 3.49 6.22 -2.92 -0.02 3.47 16 38 H 0.43 10.27 8.30 -92.71 -0.77 9.50 16 39 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 40 H 0.09 2.85 7.69 -2.39 -0.02 2.83 16 41 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.09 3.38 8.04 -2.39 -0.02 3.36 16 43 H 0.37 19.82 7.57 -74.06 -0.56 19.26 16 44 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 45 H 0.06 2.86 8.03 -2.38 -0.02 2.84 16 46 H 0.06 3.26 7.33 -2.39 -0.02 3.24 16 47 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 48 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -61.68 395.37 0.73 -60.95 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: -0.34 Total: 44.13 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 5.19 Total: 20.46 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -4.10 Total: -94.33 kcal Atomic # 8 Polarization: -72.22 SS G_CDS: -2.05 Total: -74.27 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -61.68 0.73 -60.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832794240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.993 kcal (2) G-P(sol) polarization free energy of solvation -61.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds