Wall clock time and date at job start Sat Apr 11 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 C 1.50703 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.38295 * 119.92063 * 89.99919 * 4 3 2 6 6 C 1.38096 * 120.07424 * 180.02562 * 5 4 3 7 7 C 1.38929 * 119.92423 * 0.02562 * 6 5 4 8 8 N 1.39722 * 120.07885 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99382 * 35.10276 * 8 7 6 10 10 O 1.21376 * 120.00040 * 355.37919 * 9 8 7 11 11 C 1.49356 * 119.99691 * 175.37757 * 9 8 7 12 12 O 1.21359 * 120.00108 * 0.02562 * 11 9 8 13 13 N 1.34770 * 119.99818 * 179.97438 * 11 9 8 14 14 C 1.47028 * 125.65014 * 0.02562 * 13 11 9 15 15 C 1.54326 * 107.40043 * 178.83019 * 14 13 11 16 16 C 1.55400 * 102.82950 * 337.97652 * 15 14 13 17 17 O 1.42908 * 110.89155 * 277.26945 * 16 15 14 18 18 C 1.50705 * 111.07046 * 153.49033 * 16 15 14 19 19 H 1.08001 * 120.00026 * 6.20750 * 18 16 15 20 20 C 1.37883 * 119.99783 * 186.20993 * 18 16 15 21 21 N 1.31506 * 119.99918 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99626 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46842 * 90.00197 * 22 20 18 24 24 H 1.48501 * 109.46927 * 209.99941 * 22 20 18 25 25 H 1.48493 * 109.47091 * 330.00155 * 22 20 18 26 26 C 1.47426 * 125.64750 * 179.97438 * 13 11 9 27 27 C 1.38935 * 119.84614 * 0.25322 * 7 6 5 28 28 C 1.38099 * 119.92162 * 359.49062 * 27 7 6 29 29 H 1.08999 * 109.46795 * 59.99717 * 1 2 3 30 30 H 1.08996 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46839 * 300.00434 * 1 2 3 32 32 H 1.09005 * 109.46839 * 239.99566 * 2 1 3 33 33 H 1.08999 * 109.46795 * 120.00283 * 2 1 3 34 34 H 1.08997 * 109.46755 * 60.00347 * 3 2 1 35 35 H 1.09002 * 109.46887 * 299.99868 * 3 2 1 36 36 H 1.08000 * 119.96059 * 0.04468 * 5 4 3 37 37 H 1.08000 * 120.03639 * 180.02562 * 6 5 4 38 38 H 0.96994 * 120.00773 * 215.10035 * 8 7 6 39 39 H 1.09003 * 109.88179 * 298.32460 * 14 13 11 40 40 H 1.08992 * 109.87914 * 59.33650 * 14 13 11 41 41 H 1.09000 * 110.72152 * 96.24823 * 15 14 13 42 42 H 1.09003 * 110.71607 * 219.52377 * 15 14 13 43 43 H 0.96698 * 113.99425 * 173.68457 * 17 16 15 44 44 H 0.97007 * 119.99993 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.36703 * 322.99877 * 26 13 11 46 46 H 1.09002 * 110.36646 * 85.21999 * 26 13 11 47 47 H 1.08001 * 120.03654 * 179.73850 * 27 7 6 48 48 H 1.07999 * 119.95844 * 180.25027 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2375 1.4421 -1.1977 6 6 5.6184 1.4414 -1.2008 7 6 6.3142 1.4405 0.0017 8 7 7.7114 1.4393 0.0023 9 6 8.3862 2.1102 -0.9522 10 8 7.7830 2.6452 -1.8595 11 6 9.8761 2.1955 -0.8934 12 8 10.4792 1.6602 0.0136 13 7 10.5509 2.8659 -1.8481 14 6 9.9491 3.5571 -2.9978 15 6 11.0976 4.2042 -3.8002 16 6 12.2348 4.3147 -2.7469 17 8 12.0707 5.4830 -1.9404 18 6 13.5889 4.3044 -3.4085 19 1 13.6638 4.3282 -4.4856 20 6 14.7320 4.2646 -2.6385 21 7 14.6407 4.2361 -1.3269 22 14 16.4103 4.2510 -3.4586 23 1 16.8821 5.6469 -3.6435 24 1 17.3734 3.5123 -2.6029 25 1 16.3097 3.5832 -4.7810 26 6 12.0148 3.0287 -1.9120 27 6 5.6174 1.4349 1.2037 28 6 4.2365 1.4409 1.1994 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.6959 1.4427 -2.1321 37 1 6.1569 1.4417 -2.1370 38 1 8.1958 0.9557 0.6896 39 1 9.4171 2.8408 -3.6239 40 1 9.2610 4.3269 -2.6487 41 1 11.3998 3.5619 -4.6274 42 1 10.8070 5.1903 -4.1624 43 1 12.6984 5.5463 -1.2076 44 1 15.4449 4.2084 -0.7852 45 1 12.4269 3.1515 -0.9105 46 1 12.4706 2.1709 -2.4066 47 1 6.1552 1.4299 2.1403 48 1 3.6942 1.4407 2.1334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832794254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:56 Heat of formation + Delta-G solvation = -97.273100 kcal Electronic energy + Delta-G solvation = -29837.160819 eV Core-core repulsion = 25663.688778 eV Total energy + Delta-G solvation = -4173.472042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.94468 -39.55214 -38.37713 -37.27079 -35.94141 -34.51733 -33.95758 -32.28546 -31.10515 -30.47016 -30.27164 -27.99043 -26.84617 -25.65806 -24.00471 -23.13044 -22.53473 -21.75830 -20.84381 -19.85215 -19.56277 -17.94096 -17.21565 -17.16823 -16.36301 -16.01403 -15.79593 -15.51880 -15.20474 -14.74284 -14.69337 -14.47023 -14.15105 -14.11595 -13.85239 -13.53219 -13.14430 -13.11910 -13.02590 -12.88958 -12.50653 -12.36909 -12.34659 -11.73465 -11.63536 -11.59914 -11.45120 -11.26372 -11.08794 -11.04806 -10.93181 -10.84877 -10.62615 -10.50329 -10.31141 -10.23545 -9.42967 -9.27600 -9.03857 -8.74274 -8.45956 -8.20831 -7.96736 -6.33194 -4.42834 0.98279 1.26589 1.75770 2.49346 3.18421 3.26155 3.28504 3.40435 3.65947 3.77168 4.22944 4.49478 4.52743 4.58897 4.76406 4.79487 4.86426 4.94499 5.12760 5.13603 5.23507 5.37899 5.43029 5.47013 5.50037 5.50937 5.69289 5.74188 5.77713 5.81310 5.87373 5.95968 5.99866 6.12913 6.16488 6.22353 6.34771 6.45941 6.47419 6.68455 6.71322 6.78925 6.86989 7.07489 7.14907 7.26267 7.68705 7.73428 7.93347 7.96466 8.31831 8.61492 9.24403 9.33048 10.74060 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.001930 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.554781 B =14504.384333 C =14899.205107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.078 4.078 4 C -0.100 4.100 5 C -0.099 4.099 6 C -0.117 4.117 7 C 0.142 3.858 8 N -0.651 5.651 9 C 0.511 3.489 10 O -0.496 6.496 11 C 0.510 3.490 12 O -0.535 6.535 13 N -0.571 5.571 14 C 0.109 3.891 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.581 6.581 18 C -0.537 4.537 19 H 0.069 0.931 20 C 0.071 3.929 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.092 3.908 27 C -0.139 4.139 28 C -0.099 4.099 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.422 0.578 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.381 0.619 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.148 -7.614 3.472 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.116 4.116 4 C -0.101 4.101 5 C -0.117 4.117 6 C -0.137 4.137 7 C 0.048 3.952 8 N -0.298 5.298 9 C 0.294 3.706 10 O -0.369 6.369 11 C 0.291 3.709 12 O -0.414 6.414 13 N -0.303 5.303 14 C -0.013 4.013 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.389 6.389 18 C -0.576 4.576 19 H 0.087 0.913 20 C -0.132 4.132 21 N -0.532 5.532 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.029 4.029 27 C -0.160 4.160 28 C -0.118 4.118 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.260 0.740 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.231 0.769 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.145 0.855 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.583 -7.410 3.058 23.964 hybrid contribution 1.708 -0.376 0.471 1.811 sum -20.875 -7.786 3.529 22.558 Atomic orbital electron populations 1.21795 0.95778 1.01659 1.01830 1.21524 0.95544 0.96194 1.02437 1.20603 0.90836 0.97261 1.02851 1.19882 0.95679 1.01384 0.93140 1.20924 0.93441 0.99715 0.97648 1.21322 0.94207 1.00314 0.97875 1.17784 0.81989 1.01035 0.94356 1.43185 1.04730 1.50810 1.31114 1.20625 0.89394 0.78504 0.82114 1.90729 1.69817 1.43696 1.32697 1.19317 0.86722 0.81578 0.83240 1.90745 1.69375 1.47050 1.34236 1.48682 1.10370 1.47984 1.23269 1.22179 0.96260 0.96060 0.86835 1.22751 0.94671 1.00553 0.97920 1.19702 0.92073 0.81211 0.86254 1.86138 1.61261 1.44909 1.46632 1.21461 0.89833 1.52410 0.93849 0.91331 1.25089 0.99952 0.93248 0.94946 1.69705 1.30116 1.49443 1.03956 0.86378 0.82708 0.78319 0.79377 1.20348 1.21001 1.19659 1.23530 0.74604 1.00812 1.03904 1.20936 0.94542 1.03971 0.96515 1.20775 0.93116 1.00236 0.97656 0.92699 0.92735 0.92734 0.91825 0.91875 0.91118 0.91051 0.85790 0.84211 0.74024 0.91665 0.91078 0.90278 0.90432 0.76924 0.91927 0.89003 0.91251 0.85487 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 3 C -0.08 -0.55 5.34 -27.88 -0.15 -0.70 16 4 C -0.10 -0.93 5.14 -104.58 -0.54 -1.47 16 5 C -0.10 -1.04 9.69 -39.61 -0.38 -1.42 16 6 C -0.12 -1.49 8.70 -39.38 -0.34 -1.83 16 7 C 0.14 1.81 6.30 -83.75 -0.53 1.28 16 8 N -0.65 -8.93 5.32 -10.29 -0.05 -8.98 16 9 C 0.51 8.56 7.70 -11.63 -0.09 8.47 16 10 O -0.50 -8.73 11.55 5.47 0.06 -8.67 16 11 C 0.51 10.03 7.91 -11.63 -0.09 9.93 16 12 O -0.54 -11.44 16.74 5.49 0.09 -11.34 16 13 N -0.57 -11.86 3.33 -171.07 -0.57 -12.42 16 14 C 0.11 2.06 5.48 -3.06 -0.02 2.04 16 15 C -0.12 -2.42 6.15 -24.76 -0.15 -2.57 16 16 C 0.25 5.91 0.87 -89.49 -0.08 5.83 16 17 O -0.58 -14.61 13.16 -35.23 -0.46 -15.07 16 18 C -0.54 -13.68 8.28 -34.44 -0.29 -13.97 16 19 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 21 N -0.89 -23.25 10.69 55.43 0.59 -22.66 16 22 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C 0.09 2.15 5.39 -2.53 -0.01 2.13 16 27 C -0.14 -1.46 9.97 -39.37 -0.39 -1.86 16 28 C -0.10 -0.92 9.69 -39.62 -0.38 -1.30 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.94 6.22 -52.49 -0.33 1.61 16 38 H 0.42 5.11 8.30 -40.82 -0.34 4.78 16 39 H 0.07 1.12 7.70 -51.93 -0.40 0.72 16 40 H 0.07 1.36 7.57 -51.93 -0.39 0.97 16 41 H 0.08 1.47 8.04 -51.93 -0.42 1.06 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.38 9.75 7.56 45.56 0.34 10.10 16 44 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 46 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 47 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -28.54 395.38 -9.25 -37.79 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -6.52 Total: 15.52 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -3.33 Total: 4.93 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.03 Total: -44.06 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.31 Total: -35.08 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.54 -9.25 -37.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832794254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.484 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds