Wall clock time and date at job start Sat Apr 11 2020 07:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46897 * 2 1 4 4 C 1.50700 * 109.47147 * 119.99429 * 2 1 3 5 5 C 1.38303 * 119.92184 * 120.00030 * 4 2 1 6 6 C 1.38088 * 120.07786 * 180.02562 * 5 4 2 7 7 C 1.38940 * 119.92381 * 359.97438 * 6 5 4 8 8 N 1.39718 * 120.07462 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00171 * 35.10506 * 8 7 6 10 10 O 1.21375 * 119.99825 * 355.38089 * 9 8 7 11 11 C 1.49349 * 120.00262 * 175.37311 * 9 8 7 12 12 O 1.21363 * 120.00162 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00262 * 179.97438 * 11 9 8 14 14 C 1.47025 * 125.64483 * 0.02562 * 13 11 9 15 15 C 1.54323 * 107.26733 * 181.03673 * 14 13 11 16 16 C 1.55162 * 102.94387 * 22.19715 * 15 14 13 17 17 O 1.42895 * 111.00100 * 82.56980 * 16 15 14 18 18 C 1.50704 * 111.00159 * 206.42209 * 16 15 14 19 19 H 1.07998 * 120.00082 * 353.64810 * 18 16 15 20 20 C 1.37876 * 119.99567 * 173.64834 * 18 16 15 21 21 N 1.31519 * 119.99968 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99779 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47323 * 60.00105 * 22 20 18 24 24 H 1.48500 * 109.47120 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47064 * 300.00079 * 22 20 18 26 26 C 1.47418 * 125.65059 * 180.02562 * 13 11 9 27 27 C 1.38929 * 119.84375 * 0.26186 * 7 6 5 28 28 C 1.38098 * 119.92581 * 359.50628 * 27 7 6 29 29 H 1.09004 * 109.47116 * 300.00077 * 1 2 3 30 30 H 1.08996 * 109.47222 * 60.00330 * 1 2 3 31 31 H 1.09005 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46989 * 240.00015 * 2 1 3 33 33 H 1.08996 * 109.46855 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46916 * 299.99858 * 3 2 1 35 35 H 1.08993 * 109.46801 * 59.99998 * 3 2 1 36 36 H 1.07999 * 119.96028 * 359.97438 * 5 4 2 37 37 H 1.07991 * 120.04156 * 179.97438 * 6 5 4 38 38 H 0.97000 * 120.00082 * 215.09450 * 8 7 6 39 39 H 1.08991 * 109.88573 * 300.45540 * 14 13 11 40 40 H 1.09000 * 109.87942 * 61.62529 * 14 13 11 41 41 H 1.09001 * 110.71523 * 140.55936 * 15 14 13 42 42 H 1.08996 * 110.72326 * 263.65007 * 15 14 13 43 43 H 0.96703 * 113.99468 * 186.34692 * 17 16 15 44 44 H 0.97001 * 119.99502 * 180.02562 * 21 20 18 45 45 H 1.09005 * 110.36849 * 274.72864 * 26 13 11 46 46 H 1.09004 * 110.37133 * 37.05229 * 26 13 11 47 47 H 1.08008 * 120.03341 * 179.72280 * 27 7 6 48 48 H 1.08002 * 119.95957 * 180.25647 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8274 -1.8346 1.1019 6 6 3.2890 -2.4883 2.2272 7 6 2.9544 -2.0149 3.4899 8 7 3.4193 -2.6741 4.6307 9 6 4.6417 -3.2419 4.6299 10 8 5.3045 -3.2539 3.6131 11 6 5.1807 -3.8560 5.8800 12 8 4.5179 -3.8443 6.8965 13 7 6.4029 -4.4242 5.8790 14 6 7.3077 -4.5084 4.7232 15 6 8.5726 -5.2619 5.1856 16 6 8.0720 -6.0559 6.4211 17 8 7.4294 -7.2689 6.0243 18 6 9.2021 -6.3339 7.3786 19 1 10.2156 -6.0788 7.1064 20 6 8.9420 -6.9141 8.6020 21 7 7.7078 -7.2252 8.9332 22 14 10.3428 -7.2594 9.7886 23 1 11.0250 -5.9862 10.1331 24 1 9.8030 -7.8823 11.0238 25 1 11.3141 -8.1849 9.1518 26 6 7.0538 -5.0642 7.0366 27 6 2.1515 -0.8881 3.6154 28 6 1.6973 -0.2365 2.4858 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.0868 -2.2023 0.1201 37 1 3.9094 -3.3664 2.1261 38 1 2.8624 -2.7231 5.4234 39 1 6.8251 -5.0561 3.9137 40 1 7.5749 -3.5063 4.3879 41 1 8.9235 -5.9400 4.4076 42 1 9.3581 -4.5605 5.4668 43 1 7.0151 -7.7511 6.7530 44 1 7.5248 -7.6330 9.7941 45 1 7.5693 -4.3186 7.6420 46 1 6.3185 -5.5995 7.6373 47 1 1.8858 -0.5201 4.5955 48 1 1.0765 0.6420 2.5827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832796519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:59 Heat of formation + Delta-G solvation = -93.954255 kcal Electronic energy + Delta-G solvation = -30087.392708 eV Core-core repulsion = 25914.064582 eV Total energy + Delta-G solvation = -4173.328126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95588 -39.64174 -38.47271 -37.27696 -36.15339 -34.46623 -33.81287 -32.28525 -31.12152 -30.29599 -29.13375 -27.94299 -27.44836 -26.00982 -24.47444 -23.31954 -22.72332 -21.77397 -20.31632 -19.80634 -19.53098 -17.94169 -17.23197 -17.17769 -16.35299 -16.01440 -15.95062 -15.32015 -15.08659 -14.70277 -14.50805 -14.38694 -14.21401 -14.01688 -13.81985 -13.41938 -13.15287 -13.07826 -13.03223 -12.88018 -12.71221 -12.40296 -12.35837 -11.73823 -11.66613 -11.56211 -11.47187 -11.31204 -11.06559 -10.97738 -10.90627 -10.84506 -10.63576 -10.52732 -10.31492 -10.24318 -9.42313 -9.27072 -9.03393 -8.73739 -8.47009 -8.19731 -7.97117 -6.32955 -4.42636 0.99089 1.27083 1.76031 2.50079 3.19782 3.25662 3.27561 3.40891 3.67038 3.77220 4.23043 4.42083 4.49431 4.56566 4.81433 4.87409 4.89833 4.94532 5.15348 5.22516 5.30452 5.32941 5.42922 5.45045 5.51127 5.59865 5.65709 5.73966 5.78084 5.87073 5.90587 5.92731 6.00179 6.13604 6.17727 6.22454 6.35132 6.46549 6.49143 6.68789 6.71450 6.79012 6.87226 7.07764 7.15095 7.26482 7.68834 7.73751 7.93570 7.96537 8.32095 8.61371 9.24279 9.32927 10.74258 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.032092 B = 0.002019 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.291391 B =13866.215039 C =14222.880352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.094 4.094 5 C -0.099 4.099 6 C -0.117 4.117 7 C 0.142 3.858 8 N -0.651 5.651 9 C 0.511 3.489 10 O -0.496 6.496 11 C 0.510 3.490 12 O -0.535 6.535 13 N -0.571 5.571 14 C 0.109 3.891 15 C -0.121 4.121 16 C 0.249 3.751 17 O -0.581 6.581 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.092 3.908 27 C -0.140 4.140 28 C -0.097 4.097 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.422 0.578 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.381 0.619 44 H 0.271 0.729 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.127 0.873 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 13.729 -14.168 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.095 4.095 5 C -0.118 4.118 6 C -0.137 4.137 7 C 0.048 3.952 8 N -0.298 5.298 9 C 0.294 3.706 10 O -0.369 6.369 11 C 0.291 3.709 12 O -0.414 6.414 13 N -0.303 5.303 14 C -0.013 4.013 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.389 6.389 18 C -0.576 4.576 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.029 4.029 27 C -0.160 4.160 28 C -0.116 4.116 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.231 0.769 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.145 0.855 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.287 13.825 -14.743 23.653 hybrid contribution 0.224 -0.351 1.762 1.811 sum -12.063 13.474 -12.981 22.262 Atomic orbital electron populations 1.21863 0.94413 1.02034 1.01808 1.20100 0.95847 0.95996 0.95419 1.21862 1.01384 0.95137 1.01791 1.19850 0.98653 0.96348 0.94633 1.20959 0.97210 0.95222 0.98361 1.21333 1.00639 1.01095 0.90624 1.17782 0.97841 0.93075 0.86473 1.43184 1.17078 1.53719 1.15853 1.20619 0.81385 0.78854 0.89772 1.90729 1.57849 1.54809 1.33560 1.19322 0.82308 0.81323 0.87922 1.90746 1.57828 1.59210 1.33618 1.48680 1.14176 1.52343 1.15099 1.22184 0.90815 1.00308 0.88004 1.22711 0.95459 0.98420 0.99335 1.19630 0.88612 0.81535 0.89394 1.86133 1.75397 1.37707 1.39702 1.21418 0.93778 1.41924 1.00443 0.91389 1.25093 0.96156 0.94067 0.97947 1.69699 1.18615 1.41660 1.23247 0.86432 0.81813 0.78746 0.79752 1.19995 1.21080 1.19954 1.23534 0.96719 0.95935 0.86699 1.20919 1.01112 0.94479 0.99504 1.20704 0.99976 0.99591 0.91293 0.92478 0.92501 0.92495 0.90499 0.92451 0.92500 0.92476 0.85778 0.84167 0.74025 0.91080 0.91639 0.90467 0.90281 0.76912 0.91873 0.91275 0.88985 0.85542 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.01 37.16 0.33 -0.56 16 2 C -0.06 -0.39 3.09 -91.77 -0.28 -0.68 16 3 C -0.14 -0.94 9.01 37.16 0.33 -0.61 16 4 C -0.09 -0.88 4.79 -104.58 -0.50 -1.38 16 5 C -0.10 -1.05 9.66 -39.61 -0.38 -1.43 16 6 C -0.12 -1.50 8.70 -39.38 -0.34 -1.84 16 7 C 0.14 1.80 6.30 -83.75 -0.53 1.27 16 8 N -0.65 -8.92 5.32 -10.30 -0.05 -8.97 16 9 C 0.51 8.55 7.70 -11.63 -0.09 8.46 16 10 O -0.50 -8.72 11.55 5.47 0.06 -8.66 16 11 C 0.51 10.02 7.91 -11.63 -0.09 9.92 16 12 O -0.54 -11.43 16.74 5.49 0.09 -11.33 16 13 N -0.57 -11.84 3.33 -171.08 -0.57 -12.41 16 14 C 0.11 2.06 5.49 -3.06 -0.02 2.05 16 15 C -0.12 -2.43 6.13 -24.89 -0.15 -2.58 16 16 C 0.25 5.91 0.87 -89.63 -0.08 5.83 16 17 O -0.58 -14.54 13.16 -35.23 -0.46 -15.00 16 18 C -0.54 -13.67 8.27 -34.44 -0.28 -13.96 16 19 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 20 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 21 N -0.89 -23.23 10.69 55.43 0.59 -22.64 16 22 Si 0.91 19.98 29.54 -169.99 -5.02 14.96 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.09 2.14 5.38 -2.54 -0.01 2.12 16 27 C -0.14 -1.45 9.97 -39.38 -0.39 -1.84 16 28 C -0.10 -0.89 8.70 -39.61 -0.34 -1.24 16 29 H 0.06 0.34 7.38 -51.93 -0.38 -0.04 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.36 7.38 -51.93 -0.38 -0.03 16 36 H 0.12 1.10 7.94 -52.49 -0.42 0.68 16 37 H 0.14 2.00 6.22 -52.49 -0.33 1.67 16 38 H 0.42 5.12 8.30 -40.82 -0.34 4.79 16 39 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 40 H 0.07 1.14 7.69 -51.93 -0.40 0.74 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 43 H 0.38 9.71 7.57 45.56 0.34 10.05 16 44 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 46 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 47 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 48 H 0.12 0.88 7.09 -52.49 -0.37 0.51 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -28.40 391.18 -8.76 -37.17 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.37 Total: 15.72 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.93 Total: 5.27 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.03 Total: -44.02 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.31 Total: -34.99 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.40 -8.76 -37.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832796519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.786 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds