Wall clock time and date at job start Sat Apr 11 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46897 * 2 1 4 4 C 1.50700 * 109.47147 * 119.99429 * 2 1 3 5 5 C 1.38303 * 119.92184 * 120.00030 * 4 2 1 6 6 C 1.38088 * 120.07786 * 180.02562 * 5 4 2 7 7 C 1.38940 * 119.92381 * 359.97438 * 6 5 4 8 8 N 1.39718 * 120.07462 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00171 * 35.10506 * 8 7 6 10 10 O 1.21375 * 119.99825 * 355.38089 * 9 8 7 11 11 C 1.49349 * 120.00262 * 175.37311 * 9 8 7 12 12 O 1.21363 * 120.00162 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00262 * 179.97438 * 11 9 8 14 14 C 1.47025 * 125.64483 * 0.02562 * 13 11 9 15 15 C 1.54323 * 107.26733 * 181.03673 * 14 13 11 16 16 C 1.55162 * 102.94387 * 22.19715 * 15 14 13 17 17 O 1.42895 * 111.00100 * 82.56980 * 16 15 14 18 18 C 1.50704 * 111.00159 * 206.42209 * 16 15 14 19 19 H 1.07998 * 120.00082 * 353.64810 * 18 16 15 20 20 C 1.37876 * 119.99567 * 173.64834 * 18 16 15 21 21 N 1.31519 * 119.99968 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99779 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47323 * 60.00105 * 22 20 18 24 24 H 1.48500 * 109.47120 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47064 * 300.00079 * 22 20 18 26 26 C 1.47418 * 125.65059 * 180.02562 * 13 11 9 27 27 C 1.38929 * 119.84375 * 0.26186 * 7 6 5 28 28 C 1.38098 * 119.92581 * 359.50628 * 27 7 6 29 29 H 1.09004 * 109.47116 * 300.00077 * 1 2 3 30 30 H 1.08996 * 109.47222 * 60.00330 * 1 2 3 31 31 H 1.09005 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46989 * 240.00015 * 2 1 3 33 33 H 1.08996 * 109.46855 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46916 * 299.99858 * 3 2 1 35 35 H 1.08993 * 109.46801 * 59.99998 * 3 2 1 36 36 H 1.07999 * 119.96028 * 359.97438 * 5 4 2 37 37 H 1.07991 * 120.04156 * 179.97438 * 6 5 4 38 38 H 0.97000 * 120.00082 * 215.09450 * 8 7 6 39 39 H 1.08991 * 109.88573 * 300.45540 * 14 13 11 40 40 H 1.09000 * 109.87942 * 61.62529 * 14 13 11 41 41 H 1.09001 * 110.71523 * 140.55936 * 15 14 13 42 42 H 1.08996 * 110.72326 * 263.65007 * 15 14 13 43 43 H 0.96703 * 113.99468 * 186.34692 * 17 16 15 44 44 H 0.97001 * 119.99502 * 180.02562 * 21 20 18 45 45 H 1.09005 * 110.36849 * 274.72864 * 26 13 11 46 46 H 1.09004 * 110.37133 * 37.05229 * 26 13 11 47 47 H 1.08008 * 120.03341 * 179.72280 * 27 7 6 48 48 H 1.08002 * 119.95957 * 180.25647 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8274 -1.8346 1.1019 6 6 3.2890 -2.4883 2.2272 7 6 2.9544 -2.0149 3.4899 8 7 3.4193 -2.6741 4.6307 9 6 4.6417 -3.2419 4.6299 10 8 5.3045 -3.2539 3.6131 11 6 5.1807 -3.8560 5.8800 12 8 4.5179 -3.8443 6.8965 13 7 6.4029 -4.4242 5.8790 14 6 7.3077 -4.5084 4.7232 15 6 8.5726 -5.2619 5.1856 16 6 8.0720 -6.0559 6.4211 17 8 7.4294 -7.2689 6.0243 18 6 9.2021 -6.3339 7.3786 19 1 10.2156 -6.0788 7.1064 20 6 8.9420 -6.9141 8.6020 21 7 7.7078 -7.2252 8.9332 22 14 10.3428 -7.2594 9.7886 23 1 11.0250 -5.9862 10.1331 24 1 9.8030 -7.8823 11.0238 25 1 11.3141 -8.1849 9.1518 26 6 7.0538 -5.0642 7.0366 27 6 2.1515 -0.8881 3.6154 28 6 1.6973 -0.2365 2.4858 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.0868 -2.2023 0.1201 37 1 3.9094 -3.3664 2.1261 38 1 2.8624 -2.7231 5.4234 39 1 6.8251 -5.0561 3.9137 40 1 7.5749 -3.5063 4.3879 41 1 8.9235 -5.9400 4.4076 42 1 9.3581 -4.5605 5.4668 43 1 7.0151 -7.7511 6.7530 44 1 7.5248 -7.6330 9.7941 45 1 7.5693 -4.3186 7.6420 46 1 6.3185 -5.5995 7.6373 47 1 1.8858 -0.5201 4.5955 48 1 1.0765 0.6420 2.5827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832796519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:58 Heat of formation + Delta-G solvation = -111.853978 kcal Electronic energy + Delta-G solvation = -30088.168898 eV Core-core repulsion = 25914.064582 eV Total energy + Delta-G solvation = -4174.104316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.23092 -40.84790 -39.75100 -38.94791 -37.12455 -36.10028 -34.83670 -34.25403 -32.02506 -31.91915 -30.09491 -29.65722 -27.91575 -27.69355 -25.89070 -24.45509 -23.76683 -22.97020 -21.60324 -21.18121 -20.76047 -19.29299 -19.02475 -18.45982 -17.76575 -17.38226 -17.10551 -16.82194 -16.41486 -16.20486 -16.04138 -15.51051 -15.18481 -14.89626 -14.79234 -14.69708 -14.69025 -14.40900 -14.18806 -13.98659 -13.76715 -13.53537 -13.46509 -13.34419 -12.95009 -12.83007 -12.77295 -12.56958 -12.37825 -12.36622 -12.27572 -12.13276 -12.02925 -11.72047 -11.54269 -11.28427 -11.22835 -10.76386 -10.60300 -10.36568 -9.88954 -9.71625 -9.10217 -8.26157 -6.42989 -0.08791 0.44487 0.53430 1.14931 1.44854 1.45872 1.53491 1.98778 2.34171 2.42823 2.79286 2.99744 3.15633 3.74049 3.78868 3.85848 4.02487 4.03698 4.11705 4.19177 4.29051 4.38028 4.43562 4.46070 4.55980 4.62511 4.65218 4.71370 4.87403 4.93623 4.99924 5.03570 5.05293 5.05712 5.09816 5.16266 5.26011 5.29673 5.31731 5.39586 5.41609 5.45262 5.47013 5.73154 5.74046 5.90162 6.03146 6.04506 6.28921 6.52942 6.65327 6.78785 7.25186 7.33703 8.79318 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.032092 B = 0.002019 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.291391 B =13866.215039 C =14222.880352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.107 4.107 6 C -0.134 4.134 7 C 0.114 3.886 8 N -0.635 5.635 9 C 0.518 3.482 10 O -0.507 6.507 11 C 0.506 3.494 12 O -0.557 6.557 13 N -0.580 5.580 14 C 0.118 3.882 15 C -0.115 4.115 16 C 0.233 3.767 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.070 0.930 20 C 0.028 3.972 21 N -0.914 5.914 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.106 3.894 27 C -0.135 4.135 28 C -0.095 4.095 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.428 0.572 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.374 0.626 44 H 0.271 0.729 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.146 0.854 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.176 15.787 -15.527 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.088 4.088 5 C -0.125 4.125 6 C -0.154 4.154 7 C 0.021 3.979 8 N -0.282 5.282 9 C 0.299 3.701 10 O -0.381 6.381 11 C 0.289 3.711 12 O -0.437 6.437 13 N -0.311 5.311 14 C -0.004 4.004 15 C -0.153 4.153 16 C 0.193 3.807 17 O -0.395 6.395 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.173 4.173 21 N -0.553 5.553 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.016 4.016 27 C -0.155 4.155 28 C -0.114 4.114 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.267 0.733 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.223 0.777 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.164 0.836 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.962 15.911 -16.135 26.105 hybrid contribution 0.313 -0.928 2.109 2.325 sum -12.649 14.983 -14.026 24.108 Atomic orbital electron populations 1.21853 0.93411 1.01937 1.02740 1.20162 0.96583 0.96213 0.94386 1.21858 1.00785 0.94675 1.02747 1.20183 0.97236 0.95505 0.95838 1.21148 0.97408 0.95647 0.98294 1.21290 1.01333 1.01126 0.91662 1.17982 0.99686 0.94467 0.85752 1.43022 1.15829 1.52725 1.16631 1.19949 0.82390 0.79448 0.88275 1.90726 1.58489 1.55687 1.33245 1.19904 0.81702 0.80640 0.88856 1.90720 1.58273 1.59876 1.34850 1.48697 1.14983 1.52639 1.14803 1.22196 0.89879 1.01235 0.87122 1.22722 0.96298 0.98366 0.97908 1.19857 0.88400 0.81305 0.91147 1.86126 1.75489 1.38377 1.39518 1.21719 0.94342 1.42203 1.01119 0.91163 1.25814 0.98169 0.93935 0.99413 1.69812 1.20051 1.41992 1.23441 0.85496 0.79155 0.78619 0.77691 1.19420 1.21091 1.19664 1.23094 0.95856 0.95453 0.87153 1.21167 0.99888 0.93407 1.01012 1.21048 0.99578 1.00032 0.90709 0.91972 0.91221 0.93113 0.90111 0.93397 0.91154 0.91998 0.84466 0.86215 0.73283 0.91067 0.89675 0.89605 0.88848 0.77674 0.92009 0.92376 0.92141 0.83625 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.01 71.98 0.65 -0.69 16 2 C -0.06 -0.64 3.09 -11.54 -0.04 -0.67 16 3 C -0.14 -1.45 9.01 71.98 0.65 -0.80 16 4 C -0.09 -1.42 4.79 -19.84 -0.09 -1.52 16 5 C -0.11 -2.13 9.66 22.25 0.21 -1.92 16 6 C -0.13 -3.40 8.70 22.40 0.19 -3.21 16 7 C 0.11 2.79 6.30 38.22 0.24 3.04 16 8 N -0.64 -17.21 5.32 -304.84 -1.62 -18.83 16 9 C 0.52 17.37 7.70 87.24 0.67 18.05 16 10 O -0.51 -17.78 11.55 -3.33 -0.04 -17.82 16 11 C 0.51 20.22 7.91 87.24 0.69 20.91 16 12 O -0.56 -24.36 16.74 -3.29 -0.06 -24.42 16 13 N -0.58 -24.38 3.33 -813.53 -2.71 -27.09 16 14 C 0.12 4.38 5.49 86.73 0.48 4.85 16 15 C -0.12 -4.54 6.13 31.78 0.19 -4.34 16 16 C 0.23 11.23 0.87 -10.15 -0.01 11.22 16 17 O -0.59 -30.07 13.16 -148.98 -1.96 -32.03 16 18 C -0.56 -28.45 8.27 25.60 0.21 -28.23 16 19 H 0.07 3.48 7.79 -2.91 -0.02 3.45 16 20 C 0.03 1.43 5.29 84.65 0.45 1.88 16 21 N -0.91 -48.61 10.69 21.45 0.23 -48.38 16 22 Si 0.97 41.04 29.54 68.60 2.03 43.06 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 C 0.11 5.11 5.38 86.85 0.47 5.57 16 27 C -0.13 -2.51 9.97 22.40 0.22 -2.29 16 28 C -0.10 -1.48 8.70 22.25 0.19 -1.29 16 29 H 0.06 0.53 7.38 -2.39 -0.02 0.51 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.57 7.38 -2.39 -0.02 0.55 16 36 H 0.14 2.27 7.94 -2.91 -0.02 2.25 16 37 H 0.12 3.50 6.22 -2.92 -0.02 3.48 16 38 H 0.43 10.26 8.30 -92.71 -0.77 9.50 16 39 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 40 H 0.09 2.85 7.69 -2.39 -0.02 2.83 16 41 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.09 3.38 8.04 -2.39 -0.02 3.36 16 43 H 0.37 19.82 7.57 -74.06 -0.56 19.26 16 44 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 45 H 0.06 2.86 8.03 -2.38 -0.02 2.84 16 46 H 0.06 3.26 7.33 -2.39 -0.02 3.25 16 47 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 48 H 0.15 1.54 7.09 -2.91 -0.02 1.52 16 Total: -1.00 -61.55 391.18 0.93 -60.63 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -0.33 Total: 44.32 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 5.38 Total: 20.56 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -4.10 Total: -94.29 kcal Atomic # 8 Polarization: -72.22 SS G_CDS: -2.05 Total: -74.27 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -61.55 0.93 -60.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832796519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.228 kcal (2) G-P(sol) polarization free energy of solvation -61.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds