Wall clock time and date at job start Sat Apr 11 2020 07:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46796 * 2 1 4 4 C 1.53005 * 109.47212 * 119.99739 * 2 1 3 5 5 C 1.53001 * 115.56224 * 280.67514 * 4 2 1 6 6 C 1.53073 * 117.49318 * 134.96371 * 4 2 1 7 7 C 1.52994 * 117.49795 * 66.36312 * 4 2 1 8 8 H 1.08999 * 117.49851 * 214.98396 * 7 4 2 9 9 N 1.46499 * 117.49895 * 359.97431 * 7 4 2 10 10 C 1.34782 * 120.00052 * 201.13235 * 9 7 4 11 11 O 1.21362 * 119.99943 * 0.02562 * 10 9 7 12 12 C 1.49352 * 119.99969 * 180.02562 * 10 9 7 13 13 O 1.21372 * 120.00122 * 359.97438 * 12 10 9 14 14 N 1.34773 * 119.99833 * 180.02562 * 12 10 9 15 15 C 1.39729 * 119.99654 * 184.62567 * 14 12 10 16 16 C 1.39021 * 120.04159 * 323.33132 * 15 14 12 17 17 C 1.38145 * 120.06073 * 179.72161 * 16 15 14 18 18 C 1.38180 * 120.14406 * 0.56514 * 17 16 15 19 19 C 1.38922 * 120.07936 * 359.71270 * 18 17 16 20 20 O 1.35753 * 120.02827 * 179.97438 * 19 18 17 21 21 C 1.34834 * 116.99926 * 174.66179 * 20 19 18 22 22 H 1.07998 * 120.00067 * 5.09590 * 21 20 19 23 23 C 1.38651 * 119.99708 * 185.09603 * 21 20 19 24 24 N 1.31556 * 120.00388 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99780 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47008 * 89.99800 * 25 23 21 27 27 H 1.48498 * 109.47009 * 209.99686 * 25 23 21 28 28 H 1.48495 * 109.46989 * 329.99705 * 25 23 21 29 29 C 1.38758 * 119.94385 * 0.02562 * 19 18 17 30 30 H 1.08997 * 109.47484 * 299.99757 * 1 2 3 31 31 H 1.08994 * 109.47267 * 60.00542 * 1 2 3 32 32 H 1.09007 * 109.46610 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47484 * 240.00243 * 2 1 3 34 34 H 1.09001 * 109.46870 * 180.93424 * 3 2 1 35 35 H 1.09000 * 109.47123 * 300.93624 * 3 2 1 36 36 H 1.08995 * 109.47063 * 60.93567 * 3 2 1 37 37 H 1.08993 * 109.47315 * 205.69348 * 5 4 2 38 38 H 1.09005 * 109.46767 * 325.69042 * 5 4 2 39 39 H 1.09000 * 109.47206 * 85.68571 * 5 4 2 40 40 H 1.09001 * 117.51197 * 145.03421 * 6 4 2 41 41 H 1.08997 * 117.51556 * 359.97438 * 6 4 2 42 42 H 0.96998 * 120.00202 * 21.13982 * 9 7 4 43 43 H 0.96995 * 120.00583 * 4.61554 * 14 12 10 44 44 H 1.07999 * 119.96744 * 359.97438 * 16 15 14 45 45 H 1.07999 * 119.92295 * 180.25909 * 17 16 15 46 46 H 1.07994 * 119.96062 * 179.70208 * 18 17 16 47 47 H 0.96999 * 120.00228 * 180.02562 * 24 23 21 48 48 H 1.07994 * 120.07735 * 179.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0191 0.0997 2.5403 6 6 3.1803 -1.7264 1.0689 7 6 1.7625 -2.2216 1.3616 8 1 1.5649 -2.6239 2.3552 9 7 1.0283 -2.8576 0.2650 10 6 0.3885 -4.0260 0.4707 11 8 0.4204 -4.5509 1.5644 12 6 -0.3595 -4.6747 -0.6475 13 8 -0.3917 -4.1495 -1.7412 14 7 -0.9996 -5.8427 -0.4416 15 6 -1.6177 -6.4982 -1.5097 16 6 -2.2518 -5.7629 -2.5046 17 6 -2.8580 -6.4104 -3.5637 18 6 -2.8464 -7.7904 -3.6317 19 6 -2.2194 -8.5313 -2.6378 20 8 -2.2090 -9.8871 -2.7054 21 6 -1.4904 -10.5412 -1.7706 22 1 -1.0244 -9.9921 -0.9658 23 6 -1.3497 -11.9186 -1.8427 24 7 -1.9168 -12.5874 -2.8234 25 14 -0.3547 -12.8249 -0.5471 26 1 -1.2457 -13.2235 0.5720 27 1 0.2554 -14.0371 -1.1500 28 1 0.7170 -11.9344 -0.0337 29 6 -1.6047 -7.8844 -1.5752 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1298 1.4426 -0.0168 35 1 1.6629 1.9612 -0.8815 36 1 1.6903 1.9515 0.8982 37 1 2.7751 -0.2824 3.2261 38 1 2.2315 1.1438 2.3104 39 1 1.0356 0.0226 3.0039 40 1 3.9155 -1.8029 1.8700 41 1 3.5665 -1.8741 0.0605 42 1 1.0026 -2.4380 -0.6091 43 1 -1.0312 -6.2283 0.4478 44 1 -2.2670 -4.6843 -2.4515 45 1 -3.3464 -5.8368 -4.3375 46 1 -3.3253 -8.2937 -4.4585 47 1 -1.8187 -13.5511 -2.8735 48 1 -1.1171 -8.4582 -0.8012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839584618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:23 Heat of formation + Delta-G solvation = -44.836217 kcal Electronic energy + Delta-G solvation = -29614.855180 eV Core-core repulsion = 25443.656972 eV Total energy + Delta-G solvation = -4171.198208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.08364 -39.95051 -38.93748 -38.21775 -36.56056 -34.82824 -34.16809 -32.97754 -32.26864 -29.58421 -28.88950 -28.63500 -27.38553 -25.69539 -25.12368 -23.10777 -22.56292 -21.88551 -21.37172 -20.22358 -19.22135 -18.55261 -18.04112 -17.28323 -16.96412 -16.27292 -15.96456 -15.60058 -15.18252 -15.04941 -14.60165 -14.49669 -14.26943 -14.20624 -13.98224 -13.89247 -13.66075 -13.56281 -13.25571 -13.04405 -12.87589 -12.45277 -12.33759 -12.03399 -11.90350 -11.81966 -11.77391 -11.56137 -11.53018 -11.21397 -11.09991 -11.00718 -10.97927 -10.85547 -10.46932 -10.21633 -9.90721 -9.64179 -9.43528 -9.09774 -8.84260 -7.86138 -7.25173 -6.47487 -4.07469 1.15078 1.99781 2.20484 2.35128 3.04136 3.12166 3.13245 3.17665 3.40873 3.47566 3.94679 4.11420 4.25693 4.30286 4.38466 4.48622 4.53149 4.81355 4.91349 5.02117 5.05335 5.23910 5.24131 5.30318 5.37128 5.38990 5.46649 5.48254 5.50204 5.61751 5.62081 5.66198 5.79986 5.90632 5.93766 5.94766 6.00173 6.02796 6.12454 6.17635 6.52910 6.68534 6.85873 6.94453 7.06937 7.21964 7.36076 7.42216 7.63185 7.70708 7.95132 7.99418 8.97852 9.66055 10.70166 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.002173 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.177056 B =12883.456798 C =14205.831714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.122 4.122 5 C -0.120 4.120 6 C -0.181 4.181 7 C 0.084 3.916 8 H 0.140 0.860 9 N -0.672 5.672 10 C 0.515 3.485 11 O -0.515 6.515 12 C 0.504 3.496 13 O -0.502 6.502 14 N -0.634 5.634 15 C 0.169 3.831 16 C -0.202 4.202 17 C -0.065 4.065 18 C -0.193 4.193 19 C 0.166 3.834 20 O -0.174 6.174 21 C -0.394 4.394 22 H 0.091 0.909 23 C 0.040 3.960 24 N -0.861 5.861 25 Si 0.940 3.060 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.267 1.267 29 C -0.249 4.249 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.414 0.586 43 H 0.419 0.581 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.270 0.730 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.534 25.347 8.315 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.082 4.082 3 C -0.203 4.203 4 C -0.123 4.123 5 C -0.177 4.177 6 C -0.220 4.220 7 C -0.022 4.022 8 H 0.158 0.842 9 N -0.325 5.325 10 C 0.296 3.704 11 O -0.389 6.389 12 C 0.285 3.715 13 O -0.376 6.376 14 N -0.280 5.280 15 C 0.077 3.923 16 C -0.223 4.223 17 C -0.084 4.084 18 C -0.213 4.213 19 C 0.112 3.888 20 O -0.077 6.077 21 C -0.470 4.470 22 H 0.109 0.891 23 C -0.164 4.164 24 N -0.495 5.495 25 Si 0.765 3.235 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.192 1.192 29 C -0.270 4.270 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.252 0.748 43 H 0.256 0.744 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.080 0.920 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.430 24.918 8.107 27.237 hybrid contribution 0.643 -0.553 0.709 1.106 sum 8.072 24.365 8.816 27.139 Atomic orbital electron populations 1.21915 0.94468 1.02504 1.02014 1.20663 0.96028 0.96278 0.95196 1.21879 1.01085 0.95346 1.01984 1.22082 1.02218 0.90203 0.97786 1.21462 1.02196 0.99940 0.94146 1.23785 0.91903 1.02441 1.03823 1.21863 0.94522 0.93469 0.92301 0.84214 1.45178 1.50736 1.21855 1.14718 1.20115 0.80150 0.81663 0.88507 1.90774 1.60412 1.62726 1.25034 1.19992 0.80594 0.82454 0.88416 1.90777 1.59823 1.62268 1.24762 1.43092 1.51041 1.21442 1.12442 1.17400 0.95224 0.90767 0.88912 1.20634 1.04861 0.99514 0.97249 1.20546 0.97655 0.93229 0.96934 1.20308 1.07481 0.93140 1.00349 1.19060 0.92551 0.85032 0.92162 1.84010 1.61740 1.11917 1.50011 1.21293 1.30433 0.90029 1.05212 0.89133 1.25282 0.97495 0.95631 0.98000 1.70033 1.41110 1.08341 1.30056 0.85724 0.79329 0.79056 0.79415 1.19821 1.20219 1.19190 1.20867 1.10833 0.92113 1.03176 0.92423 0.92335 0.92205 0.91119 0.92519 0.92516 0.92034 0.92160 0.91021 0.91951 0.87671 0.88213 0.74757 0.74407 0.85968 0.86407 0.86195 0.91965 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.92 37.16 0.33 -0.74 16 2 C -0.06 -0.40 2.23 -90.62 -0.20 -0.60 16 3 C -0.15 -0.77 8.50 37.16 0.32 -0.45 16 4 C -0.12 -0.79 1.78 -154.47 -0.27 -1.06 16 5 C -0.12 -0.65 9.61 37.16 0.36 -0.29 16 6 C -0.18 -1.24 9.75 -26.70 -0.26 -1.50 16 7 C 0.08 0.72 5.94 -67.94 -0.40 0.32 16 8 H 0.14 1.31 7.44 -51.93 -0.39 0.93 16 9 N -0.67 -6.87 4.14 -54.27 -0.22 -7.10 16 10 C 0.51 6.75 7.89 -11.63 -0.09 6.66 16 11 O -0.51 -7.65 16.07 5.49 0.09 -7.56 16 12 C 0.50 7.61 7.72 -11.63 -0.09 7.52 16 13 O -0.50 -8.30 14.00 5.48 0.08 -8.22 16 14 N -0.63 -10.13 5.31 -10.31 -0.05 -10.19 16 15 C 0.17 3.22 6.26 -83.77 -0.52 2.69 16 16 C -0.20 -3.73 8.68 -39.33 -0.34 -4.08 16 17 C -0.06 -1.18 10.03 -39.64 -0.40 -1.57 16 18 C -0.19 -4.04 9.99 -39.35 -0.39 -4.43 16 19 C 0.17 3.97 6.65 -39.14 -0.26 3.71 16 20 O -0.17 -4.88 9.76 0.03 0.00 -4.88 16 21 C -0.39 -10.86 9.49 30.88 0.29 -10.56 16 22 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 23 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 24 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 25 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 28 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 29 C -0.25 -5.35 9.09 -39.19 -0.36 -5.71 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 6.09 -51.92 -0.32 0.19 16 33 H 0.07 0.47 7.37 -51.93 -0.38 0.09 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.29 6.26 -51.93 -0.33 -0.03 16 37 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 38 H 0.07 0.33 5.59 -51.93 -0.29 0.04 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 41 H 0.10 0.69 8.09 -51.93 -0.42 0.27 16 42 H 0.41 3.93 6.23 -40.82 -0.25 3.67 16 43 H 0.42 5.98 8.30 -40.82 -0.34 5.64 16 44 H 0.12 2.15 6.34 -52.49 -0.33 1.82 16 45 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 47 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -31.65 395.49 -7.35 -39.00 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.54 Total: 10.91 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.39 Total: -9.08 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.48 Total: -41.54 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.17 Total: -20.66 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.65 -7.35 -39.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839584618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.836 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds