Wall clock time and date at job start Sat Apr 11 2020 07:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 C 1.52999 * 109.46594 * 240.00137 * 2 1 3 5 5 N 1.46495 * 109.47079 * 120.00420 * 2 1 3 6 6 C 1.46770 * 124.34879 * 179.97438 * 5 2 1 7 7 C 1.54481 * 105.47134 * 196.99423 * 6 5 2 8 8 C 1.54625 * 101.76609 * 334.58085 * 7 6 5 9 9 H 1.09001 * 110.59425 * 143.53294 * 8 7 6 10 10 N 1.46496 * 110.48553 * 266.12093 * 8 7 6 11 11 C 1.34779 * 119.99674 * 201.22625 * 10 8 7 12 12 O 1.21592 * 120.00294 * 0.02562 * 11 10 8 13 13 C 1.47534 * 119.99880 * 179.97438 * 11 10 8 14 14 C 1.39668 * 120.19728 * 0.23891 * 13 11 10 15 15 C 1.37828 * 119.91843 * 180.22864 * 14 13 11 16 16 C 1.38572 * 120.32543 * 359.78606 * 15 14 13 17 17 C 1.38031 * 120.40010 * 359.97438 * 16 15 14 18 18 C 1.38835 * 120.07137 * 0.02562 * 17 16 15 19 19 O 1.35521 * 120.15933 * 179.97438 * 18 17 16 20 20 C 1.34816 * 117.00153 * 354.39519 * 19 18 17 21 21 H 1.08001 * 120.00152 * 5.04911 * 20 19 18 22 22 C 1.38693 * 120.00129 * 185.05909 * 20 19 18 23 23 N 1.31519 * 120.00225 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99900 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47199 * 90.00468 * 24 22 20 26 26 H 1.48501 * 109.47372 * 210.00592 * 24 22 20 27 27 H 1.48508 * 109.47228 * 330.00395 * 24 22 20 28 28 C 1.34419 * 124.35155 * 359.97114 * 5 2 1 29 29 O 1.21278 * 124.94048 * 359.65301 * 28 5 2 30 30 H 1.08999 * 109.46935 * 299.99887 * 1 2 3 31 31 H 1.08997 * 109.46983 * 59.99809 * 1 2 3 32 32 H 1.09004 * 109.46997 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46923 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46831 * 300.00193 * 3 2 1 35 35 H 1.08999 * 109.47094 * 60.00211 * 3 2 1 36 36 H 1.08996 * 109.47648 * 299.99527 * 4 2 1 37 37 H 1.08997 * 109.47411 * 60.00316 * 4 2 1 38 38 H 1.09008 * 109.46712 * 179.97438 * 4 2 1 39 39 H 1.09004 * 110.24380 * 315.99456 * 6 5 2 40 40 H 1.08992 * 110.24396 * 77.99024 * 6 5 2 41 41 H 1.09006 * 110.96465 * 216.45967 * 7 6 5 42 42 H 1.09002 * 110.97251 * 92.70441 * 7 6 5 43 43 H 0.96992 * 120.00445 * 21.22898 * 10 8 7 44 44 H 1.07993 * 120.04027 * 359.97438 * 14 13 11 45 45 H 1.08003 * 119.83986 * 179.76502 * 15 14 13 46 46 H 1.07999 * 119.80245 * 179.97438 * 16 15 14 47 47 H 1.07999 * 119.96498 * 179.97438 * 17 16 15 48 48 H 0.96997 * 119.99801 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 3.4368 -0.8796 1.5222 7 6 3.4693 -1.9973 2.5880 8 6 2.0644 -1.8702 3.2211 9 1 1.6703 -2.8529 3.4802 10 7 2.1117 -1.0095 4.4056 11 6 1.1435 -1.0943 5.3394 12 8 0.2310 -1.8856 5.1989 13 6 1.1915 -0.2279 6.5325 14 6 2.2356 0.6852 6.6961 15 6 2.2772 1.4886 7.8153 16 6 1.2851 1.3984 8.7785 17 6 0.2445 0.5042 8.6279 18 6 0.1862 -0.3130 7.5071 19 8 -0.8344 -1.1920 7.3576 20 6 -1.6982 -1.3076 8.3863 21 1 -1.6074 -0.6568 9.2434 22 6 -2.7032 -2.2625 8.3439 23 7 -3.5461 -2.3749 9.3471 24 14 -2.8604 -3.3878 6.8612 25 1 -2.0485 -4.6118 7.0805 26 1 -4.2845 -3.7653 6.6750 27 1 -2.3732 -2.6811 5.6494 28 6 1.2249 -1.2328 2.1360 29 8 0.0124 -1.2140 2.1166 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 3.9899 -1.1881 0.6350 40 1 3.8564 0.0409 1.9279 41 1 4.2486 -1.8093 3.3267 42 1 3.6013 -2.9749 2.1243 43 1 2.8397 -0.3785 4.5178 44 1 3.0115 0.7588 5.9486 45 1 3.0872 2.1916 7.9424 46 1 1.3263 2.0317 9.6524 47 1 -0.5247 0.4395 9.3832 48 1 -4.2488 -3.0430 9.3176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843617963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:27 Heat of formation + Delta-G solvation = -54.915145 kcal Electronic energy + Delta-G solvation = -31429.242415 eV Core-core repulsion = 27257.607152 eV Total energy + Delta-G solvation = -4171.635263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.05537 -39.63619 -38.19225 -36.73020 -36.51223 -36.09834 -33.34058 -32.42282 -30.83617 -29.56516 -29.19001 -27.73763 -27.62901 -26.81975 -25.25849 -23.35108 -22.46946 -21.62496 -20.93569 -20.27517 -18.66837 -17.94742 -17.87683 -16.84685 -16.66998 -16.21184 -15.46936 -15.15977 -14.71805 -14.62350 -14.47459 -14.28046 -14.14261 -13.99442 -13.98058 -13.68361 -13.31658 -13.20416 -13.04995 -12.86254 -12.60895 -12.33319 -12.31074 -12.13103 -12.08402 -11.87332 -11.77316 -11.51758 -11.39730 -11.30679 -11.24370 -11.21492 -10.81965 -10.67471 -9.98636 -9.83850 -9.59139 -9.05501 -8.85433 -8.78445 -8.61077 -8.37417 -7.46643 -6.44322 -4.09402 1.57734 2.19605 2.48839 2.77385 3.37484 3.42759 3.55775 3.63245 3.75379 4.16465 4.23861 4.41905 4.52359 4.55449 4.61260 4.71388 4.75096 4.78567 4.83589 5.11053 5.12224 5.24192 5.27226 5.34460 5.36931 5.43763 5.46313 5.50271 5.55521 5.62285 5.62786 5.72071 5.74190 5.76556 5.95675 6.04245 6.06332 6.25672 6.37857 6.53373 6.59114 6.64749 6.82456 7.00724 7.07954 7.15405 7.49050 7.68087 7.87083 7.97361 8.27146 8.85472 8.91820 9.54240 10.60461 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.003632 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.378301 B = 7706.556984 C = 9112.727720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.174 3.826 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.615 5.615 6 C 0.103 3.897 7 C -0.140 4.140 8 C 0.120 3.880 9 H 0.118 0.882 10 N -0.725 5.725 11 C 0.560 3.440 12 O -0.498 6.498 13 C -0.225 4.225 14 C -0.040 4.040 15 C -0.222 4.222 16 C -0.051 4.051 17 C -0.226 4.226 18 C 0.202 3.798 19 O -0.163 6.163 20 C -0.396 4.396 21 H 0.108 0.892 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.897 3.103 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.235 1.235 28 C 0.505 3.495 29 O -0.497 6.497 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.396 0.604 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.138 0.862 48 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.883 5.871 -17.408 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.091 3.909 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.352 5.352 6 C -0.021 4.021 7 C -0.178 4.178 8 C 0.010 3.990 9 H 0.136 0.864 10 N -0.383 5.383 11 C 0.350 3.650 12 O -0.371 6.371 13 C -0.230 4.230 14 C -0.059 4.059 15 C -0.241 4.241 16 C -0.069 4.069 17 C -0.245 4.245 18 C 0.143 3.857 19 O -0.063 6.063 20 C -0.471 4.471 21 H 0.126 0.874 22 C -0.132 4.132 23 N -0.505 5.505 24 Si 0.721 3.279 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.157 1.157 28 C 0.290 3.710 29 O -0.368 6.368 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.232 0.768 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.156 0.844 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.158 5.023 -17.664 25.132 hybrid contribution 0.323 -0.013 -0.294 0.437 sum 17.480 5.010 -17.958 25.557 Atomic orbital electron populations 1.22110 0.92091 1.03719 1.02102 1.20433 0.95419 0.91420 0.83677 1.22182 1.01189 0.95337 1.02730 1.22180 1.01217 1.01103 0.96917 1.48453 1.06952 1.57067 1.22733 1.22011 0.82670 0.98631 0.98741 1.22915 0.96545 0.99987 0.98386 1.21464 0.95380 0.96888 0.85232 0.86428 1.45682 1.29012 1.42804 1.20780 1.18267 0.81323 0.83258 0.82197 1.90905 1.32777 1.36734 1.76734 1.18789 0.99759 1.06291 0.98147 1.20725 0.95111 0.93498 0.96599 1.20519 1.01815 1.04787 0.96978 1.20961 0.92926 0.95664 0.97381 1.21288 1.02187 1.00635 1.00431 1.19013 0.86241 0.88708 0.91690 1.83792 1.31468 1.50862 1.40201 1.20926 1.08432 1.20317 0.97433 0.87426 1.24485 0.94057 0.96655 0.98049 1.69638 1.16175 1.34178 1.30482 0.86241 0.76680 0.80819 0.84125 1.19931 1.21229 1.15743 1.21369 0.87940 0.78619 0.83089 1.90787 1.12684 1.57178 1.76182 0.91076 0.92546 0.91248 0.92361 0.91414 0.92025 0.92119 0.91383 0.92345 0.90291 0.91212 0.88331 0.88648 0.76792 0.86998 0.87032 0.86836 0.84405 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 7.00 37.16 0.26 -1.51 16 2 C 0.17 1.71 1.20 -131.82 -0.16 1.55 16 3 C -0.16 -1.26 8.54 37.16 0.32 -0.94 16 4 C -0.16 -1.16 8.49 37.16 0.32 -0.85 16 5 N -0.61 -6.65 2.76 -157.57 -0.43 -7.09 16 6 C 0.10 0.71 6.60 -3.12 -0.02 0.69 16 7 C -0.14 -1.02 6.77 -25.10 -0.17 -1.19 16 8 C 0.12 1.59 3.22 -67.94 -0.22 1.38 16 9 H 0.12 1.83 7.66 -51.93 -0.40 1.43 16 10 N -0.73 -10.60 5.08 -54.86 -0.28 -10.88 16 11 C 0.56 11.59 7.75 -12.47 -0.10 11.49 16 12 O -0.50 -12.91 14.88 -16.57 -0.25 -13.16 16 13 C -0.23 -4.62 5.89 -104.81 -0.62 -5.24 16 14 C -0.04 -0.64 9.54 -39.20 -0.37 -1.01 16 15 C -0.22 -3.41 10.02 -39.61 -0.40 -3.81 16 16 C -0.05 -0.87 10.03 -39.53 -0.40 -1.27 16 17 C -0.23 -4.84 9.16 -39.44 -0.36 -5.20 16 18 C 0.20 4.85 6.66 -38.60 -0.26 4.59 16 19 O -0.16 -4.62 6.67 -21.06 -0.14 -4.76 16 20 C -0.40 -11.58 9.95 30.90 0.31 -11.27 16 21 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 22 C 0.07 2.16 5.49 -17.52 -0.10 2.06 16 23 N -0.87 -25.75 13.96 55.48 0.77 -24.98 16 24 Si 0.90 24.08 28.62 -169.99 -4.86 19.22 16 25 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.23 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.51 7.75 7.47 -10.86 -0.08 7.67 16 29 O -0.50 -10.15 13.99 5.56 0.08 -10.08 16 30 H 0.07 1.09 7.06 -51.93 -0.37 0.72 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.00 7.08 -51.93 -0.37 0.63 16 33 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.35 7.21 -51.92 -0.37 -0.03 16 39 H 0.08 0.39 7.12 -51.93 -0.37 0.02 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.53 8.03 -51.93 -0.42 0.11 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.40 4.32 6.60 -40.82 -0.27 4.05 16 44 H 0.11 1.29 6.40 -52.49 -0.34 0.95 16 45 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 46 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 47 H 0.14 3.06 5.64 -52.49 -0.30 2.76 16 48 H 0.28 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -37.23 388.62 -8.13 -45.36 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.83 Total: 3.36 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.04 Total: -2.86 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.06 Total: -42.94 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.31 Total: -27.99 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.86 Total: 19.22 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.23 -8.13 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843617963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.558 kcal (2) G-P(sol) polarization free energy of solvation -37.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds