Wall clock time and date at job start Sat Apr 11 2020 07:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 C 1.52999 * 109.46594 * 240.00137 * 2 1 3 5 5 N 1.46495 * 109.47079 * 120.00420 * 2 1 3 6 6 C 1.46770 * 124.34879 * 179.97438 * 5 2 1 7 7 C 1.54481 * 105.47134 * 196.99423 * 6 5 2 8 8 C 1.54625 * 101.76609 * 334.58085 * 7 6 5 9 9 H 1.09001 * 110.59425 * 143.53294 * 8 7 6 10 10 N 1.46496 * 110.48553 * 266.12093 * 8 7 6 11 11 C 1.34779 * 119.99674 * 201.22625 * 10 8 7 12 12 O 1.21592 * 120.00294 * 0.02562 * 11 10 8 13 13 C 1.47534 * 119.99880 * 179.97438 * 11 10 8 14 14 C 1.39668 * 120.19728 * 0.23891 * 13 11 10 15 15 C 1.37828 * 119.91843 * 180.22864 * 14 13 11 16 16 C 1.38572 * 120.32543 * 359.78606 * 15 14 13 17 17 C 1.38031 * 120.40010 * 359.97438 * 16 15 14 18 18 C 1.38835 * 120.07137 * 0.02562 * 17 16 15 19 19 O 1.35521 * 120.15933 * 179.97438 * 18 17 16 20 20 C 1.34816 * 117.00153 * 354.39519 * 19 18 17 21 21 H 1.08001 * 120.00152 * 5.04911 * 20 19 18 22 22 C 1.38693 * 120.00129 * 185.05909 * 20 19 18 23 23 N 1.31519 * 120.00225 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99900 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47199 * 90.00468 * 24 22 20 26 26 H 1.48501 * 109.47372 * 210.00592 * 24 22 20 27 27 H 1.48508 * 109.47228 * 330.00395 * 24 22 20 28 28 C 1.34419 * 124.35155 * 359.97114 * 5 2 1 29 29 O 1.21278 * 124.94048 * 359.65301 * 28 5 2 30 30 H 1.08999 * 109.46935 * 299.99887 * 1 2 3 31 31 H 1.08997 * 109.46983 * 59.99809 * 1 2 3 32 32 H 1.09004 * 109.46997 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46923 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46831 * 300.00193 * 3 2 1 35 35 H 1.08999 * 109.47094 * 60.00211 * 3 2 1 36 36 H 1.08996 * 109.47648 * 299.99527 * 4 2 1 37 37 H 1.08997 * 109.47411 * 60.00316 * 4 2 1 38 38 H 1.09008 * 109.46712 * 179.97438 * 4 2 1 39 39 H 1.09004 * 110.24380 * 315.99456 * 6 5 2 40 40 H 1.08992 * 110.24396 * 77.99024 * 6 5 2 41 41 H 1.09006 * 110.96465 * 216.45967 * 7 6 5 42 42 H 1.09002 * 110.97251 * 92.70441 * 7 6 5 43 43 H 0.96992 * 120.00445 * 21.22898 * 10 8 7 44 44 H 1.07993 * 120.04027 * 359.97438 * 14 13 11 45 45 H 1.08003 * 119.83986 * 179.76502 * 15 14 13 46 46 H 1.07999 * 119.80245 * 179.97438 * 16 15 14 47 47 H 1.07999 * 119.96498 * 179.97438 * 17 16 15 48 48 H 0.96997 * 119.99801 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 3.4368 -0.8796 1.5222 7 6 3.4693 -1.9973 2.5880 8 6 2.0644 -1.8702 3.2211 9 1 1.6703 -2.8529 3.4802 10 7 2.1117 -1.0095 4.4056 11 6 1.1435 -1.0943 5.3394 12 8 0.2310 -1.8856 5.1989 13 6 1.1915 -0.2279 6.5325 14 6 2.2356 0.6852 6.6961 15 6 2.2772 1.4886 7.8153 16 6 1.2851 1.3984 8.7785 17 6 0.2445 0.5042 8.6279 18 6 0.1862 -0.3130 7.5071 19 8 -0.8344 -1.1920 7.3576 20 6 -1.6982 -1.3076 8.3863 21 1 -1.6074 -0.6568 9.2434 22 6 -2.7032 -2.2625 8.3439 23 7 -3.5461 -2.3749 9.3471 24 14 -2.8604 -3.3878 6.8612 25 1 -2.0485 -4.6118 7.0805 26 1 -4.2845 -3.7653 6.6750 27 1 -2.3732 -2.6811 5.6494 28 6 1.2249 -1.2328 2.1360 29 8 0.0124 -1.2140 2.1166 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 3.9899 -1.1881 0.6350 40 1 3.8564 0.0409 1.9279 41 1 4.2486 -1.8093 3.3267 42 1 3.6013 -2.9749 2.1243 43 1 2.8397 -0.3785 4.5178 44 1 3.0115 0.7588 5.9486 45 1 3.0872 2.1916 7.9424 46 1 1.3263 2.0317 9.6524 47 1 -0.5247 0.4395 9.3832 48 1 -4.2488 -3.0430 9.3176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843617963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:25 Heat of formation + Delta-G solvation = -82.189470 kcal Electronic energy + Delta-G solvation = -31430.425118 eV Core-core repulsion = 27257.607152 eV Total energy + Delta-G solvation = -4172.817966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.11971 -41.22809 -39.79117 -38.17833 -37.82476 -37.16968 -34.66523 -34.51126 -32.24793 -30.80888 -30.49332 -28.69397 -28.22303 -27.82321 -27.22944 -24.82953 -23.22084 -23.14068 -22.10573 -21.76177 -19.86128 -19.62758 -19.52340 -18.12819 -17.97248 -17.37161 -16.72815 -16.51112 -16.16072 -16.04491 -15.93310 -15.55078 -15.52208 -15.43802 -15.04532 -14.84944 -14.69170 -14.54688 -14.29614 -14.12262 -14.05168 -13.98197 -13.34608 -13.17473 -13.04837 -12.88792 -12.86873 -12.66799 -12.62187 -12.44562 -12.43239 -12.28304 -12.08726 -12.02830 -12.00531 -11.55405 -11.12128 -11.00154 -10.74535 -10.01094 -9.78849 -9.64655 -9.16025 -8.62217 -6.29639 0.03807 0.64121 1.18624 1.23125 1.30901 1.54968 1.86701 2.06209 2.26247 2.37520 2.72594 3.01592 3.13659 3.35651 3.42617 3.79845 3.87460 3.90084 3.94247 4.00917 4.06999 4.17876 4.24829 4.46847 4.51937 4.59913 4.61190 4.63648 4.68777 4.77673 4.79631 4.83043 4.91477 4.93391 4.96716 5.04627 5.05476 5.17009 5.24530 5.26883 5.37728 5.38790 5.45987 5.60384 5.67892 5.74297 5.81853 6.13036 6.15022 6.56949 6.75927 7.19306 7.37030 7.57683 8.48535 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.003632 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.378301 B = 7706.556984 C = 9112.727720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.166 3.834 3 C -0.149 4.149 4 C -0.148 4.148 5 N -0.603 5.603 6 C 0.095 3.905 7 C -0.120 4.120 8 C 0.109 3.891 9 H 0.083 0.917 10 N -0.696 5.696 11 C 0.551 3.449 12 O -0.562 6.562 13 C -0.234 4.234 14 C -0.027 4.027 15 C -0.187 4.187 16 C -0.042 4.042 17 C -0.252 4.252 18 C 0.159 3.841 19 O -0.213 6.213 20 C -0.401 4.401 21 H 0.095 0.905 22 C 0.031 3.969 23 N -0.909 5.909 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.265 1.265 27 H -0.278 1.278 28 C 0.489 3.511 29 O -0.568 6.568 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.419 0.581 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.152 0.848 47 H 0.114 0.886 48 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.694 8.759 -19.697 33.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.083 3.917 3 C -0.207 4.207 4 C -0.206 4.206 5 N -0.338 5.338 6 C -0.026 4.026 7 C -0.158 4.158 8 C 0.000 4.000 9 H 0.101 0.899 10 N -0.354 5.354 11 C 0.341 3.659 12 O -0.440 6.440 13 C -0.239 4.239 14 C -0.046 4.046 15 C -0.205 4.205 16 C -0.060 4.060 17 C -0.271 4.271 18 C 0.106 3.894 19 O -0.117 6.117 20 C -0.477 4.477 21 H 0.113 0.887 22 C -0.169 4.169 23 N -0.549 5.549 24 Si 0.774 3.226 25 H -0.197 1.197 26 H -0.189 1.189 27 H -0.203 1.203 28 C 0.275 3.725 29 O -0.446 6.446 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.116 0.884 41 H 0.150 0.850 42 H 0.131 0.869 43 H 0.259 0.741 44 H 0.188 0.812 45 H 0.189 0.811 46 H 0.170 0.830 47 H 0.132 0.868 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 24.123 7.973 -19.997 32.333 hybrid contribution -1.335 -0.574 0.279 1.480 sum 22.788 7.400 -19.719 31.030 Atomic orbital electron populations 1.22016 0.95088 1.01365 1.01122 1.20653 0.93299 0.93332 0.84425 1.22129 1.02858 0.93201 1.02471 1.22125 1.02869 0.99877 0.95743 1.48594 1.08423 1.55063 1.21703 1.22470 0.80096 0.99755 1.00232 1.23006 0.92621 1.01454 0.98689 1.21647 0.99323 0.94714 0.84307 0.89892 1.45330 1.27670 1.42644 1.19719 1.18560 0.81541 0.82555 0.83240 1.90895 1.35581 1.39378 1.78185 1.19278 1.00154 1.07188 0.97243 1.21370 0.94168 0.90960 0.98067 1.21265 1.01334 1.03284 0.94607 1.21471 0.91325 0.94023 0.99153 1.21334 1.03797 1.02359 0.99594 1.19830 0.86759 0.88887 0.93939 1.83792 1.33593 1.54147 1.40187 1.20915 1.09031 1.20040 0.97743 0.88740 1.24930 0.94551 0.97910 0.99549 1.69667 1.17646 1.35974 1.31593 0.85511 0.77283 0.79292 0.80499 1.19726 1.18945 1.20305 1.21777 0.87407 0.78873 0.84459 1.90762 1.15827 1.60020 1.77946 0.95072 0.90302 0.94409 0.89456 0.89933 0.94162 0.93686 0.89905 0.89473 0.86735 0.88432 0.84951 0.86935 0.74085 0.81211 0.81140 0.83010 0.86798 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 7.00 71.98 0.50 -3.12 16 2 C 0.17 2.92 1.20 3.60 0.00 2.92 16 3 C -0.15 -1.85 8.54 71.98 0.61 -1.23 16 4 C -0.15 -1.69 8.49 71.98 0.61 -1.07 16 5 N -0.60 -11.77 2.76 -771.03 -2.13 -13.89 16 6 C 0.10 0.78 6.60 86.83 0.57 1.35 16 7 C -0.12 -1.20 6.77 31.65 0.21 -0.99 16 8 C 0.11 2.85 3.22 44.98 0.15 3.00 16 9 H 0.08 2.77 7.66 -2.39 -0.02 2.75 16 10 N -0.70 -19.23 5.08 -445.74 -2.26 -21.49 16 11 C 0.55 23.45 7.75 86.69 0.67 24.12 16 12 O -0.56 -31.66 14.88 16.89 0.25 -31.41 16 13 C -0.23 -9.51 5.89 -19.99 -0.12 -9.63 16 14 C -0.03 -0.72 9.54 22.52 0.21 -0.51 16 15 C -0.19 -4.49 10.02 22.25 0.22 -4.26 16 16 C -0.04 -1.28 10.03 22.30 0.22 -1.05 16 17 C -0.25 -11.00 9.16 22.36 0.20 -10.80 16 18 C 0.16 8.02 6.66 22.91 0.15 8.17 16 19 O -0.21 -13.11 6.67 0.82 0.01 -13.10 16 20 C -0.40 -25.58 9.95 67.93 0.68 -24.91 16 21 H 0.10 6.02 5.44 -2.91 -0.02 6.01 16 22 C 0.03 1.98 5.49 84.85 0.47 2.44 16 23 N -0.91 -57.53 13.96 21.62 0.30 -57.23 16 24 Si 0.95 54.47 28.62 68.60 1.96 56.43 16 25 H -0.27 -15.16 7.11 99.48 0.71 -14.45 16 26 H -0.26 -13.91 7.11 99.48 0.71 -13.21 16 27 H -0.28 -17.81 7.11 99.48 0.71 -17.10 16 28 C 0.49 15.45 7.47 87.90 0.66 16.11 16 29 O -0.57 -25.61 13.99 -3.02 -0.04 -25.65 16 30 H 0.03 1.04 7.06 -2.39 -0.02 1.02 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.20 7.08 -2.38 -0.02 1.18 16 33 H 0.09 0.61 7.90 -2.39 -0.02 0.59 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.52 7.21 -2.38 -0.02 0.51 16 39 H 0.11 0.28 7.12 -2.38 -0.02 0.26 16 40 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.13 0.52 8.03 -2.38 -0.02 0.50 16 42 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.42 7.10 6.60 -92.71 -0.61 6.49 16 44 H 0.17 2.51 6.40 -2.91 -0.02 2.49 16 45 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 47 H 0.11 5.46 5.64 -2.91 -0.02 5.44 16 48 H 0.29 16.70 8.31 -92.71 -0.77 15.93 16 Total: -1.00 -100.45 388.62 4.51 -95.95 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.38 Total: 9.85 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.04 Total: 0.55 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -4.09 Total: -92.61 kcal Atomic # 8 Polarization: -70.37 SS G_CDS: 0.21 Total: -70.16 kcal Atomic # 14 Polarization: 54.47 SS G_CDS: 1.96 Total: 56.43 kcal Total: -100.45 4.51 -95.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843617963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.758 kcal (2) G-P(sol) polarization free energy of solvation -100.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds