Wall clock time and date at job start Sat Apr 11 2020 07:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 C 1.53000 * 109.47014 * 119.99978 * 2 1 3 5 5 C 1.52993 * 109.47354 * 173.68824 * 4 2 1 6 6 N 1.46499 * 115.55178 * 64.26219 * 5 4 2 7 7 C 1.34774 * 120.00298 * 60.70955 * 6 5 4 8 8 O 1.21358 * 119.99786 * 5.08237 * 7 6 5 9 9 C 1.49352 * 120.00383 * 185.08429 * 7 6 5 10 10 O 1.21373 * 119.99847 * 0.02562 * 9 7 6 11 11 N 1.34771 * 119.99979 * 179.97438 * 9 7 6 12 12 C 1.39730 * 119.99917 * 174.83822 * 11 9 7 13 13 C 1.39021 * 120.04107 * 325.88453 * 12 11 9 14 14 C 1.38135 * 120.06155 * 180.27849 * 13 12 11 15 15 C 1.38185 * 120.14642 * 359.97438 * 14 13 12 16 16 C 1.38924 * 120.07838 * 359.97438 * 15 14 13 17 17 O 1.35744 * 120.02666 * 179.97438 * 16 15 14 18 18 C 1.34831 * 117.00312 * 185.74234 * 17 16 15 19 19 H 1.08004 * 119.99393 * 5.39052 * 18 17 16 20 20 C 1.38650 * 120.00422 * 185.40188 * 18 17 16 21 21 N 1.31556 * 120.00042 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99903 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47393 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47249 * 119.99776 * 22 20 18 25 25 H 1.48500 * 109.47221 * 239.99844 * 22 20 18 26 26 C 1.38759 * 119.93918 * 0.02562 * 16 15 14 27 27 C 1.53003 * 117.50218 * 209.93120 * 5 4 2 28 28 C 1.53004 * 117.49821 * 278.59204 * 5 4 2 29 29 H 1.08997 * 109.47466 * 300.00498 * 1 2 3 30 30 H 1.09000 * 109.46844 * 60.00027 * 1 2 3 31 31 H 1.08999 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47388 * 240.00285 * 2 1 3 33 33 H 1.09000 * 109.46960 * 186.91169 * 3 2 1 34 34 H 1.08995 * 109.47280 * 306.92032 * 3 2 1 35 35 H 1.09004 * 109.47165 * 66.91915 * 3 2 1 36 36 H 1.08998 * 109.47244 * 53.68810 * 4 2 1 37 37 H 1.09001 * 109.47324 * 293.68682 * 4 2 1 38 38 H 0.97001 * 120.00076 * 240.71272 * 6 5 4 39 39 H 0.97005 * 120.00283 * 354.82949 * 11 9 7 40 40 H 1.07997 * 119.96599 * 0.24586 * 13 12 11 41 41 H 1.08001 * 119.92946 * 179.97438 * 14 13 12 42 42 H 1.07992 * 119.95851 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99776 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.06753 * 180.02562 * 26 16 15 45 45 H 1.08993 * 117.50324 * 215.00043 * 27 5 4 46 46 H 1.09004 * 117.49662 * 0.02843 * 27 5 4 47 47 H 1.08992 * 117.49809 * 359.97438 * 28 5 4 48 48 H 1.09001 * 117.49827 * 144.97570 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5616 -0.8601 1.1726 6 7 4.3125 0.3978 1.1875 7 6 4.2158 1.2278 2.2450 8 8 3.5811 0.8925 3.2235 9 6 4.8897 2.5602 2.2126 10 8 5.5240 2.8958 1.2337 11 7 4.7925 3.3904 3.2698 12 6 5.5099 4.5894 3.2849 13 6 6.7649 4.6570 2.6907 14 6 7.4770 5.8405 2.7104 15 6 6.9445 6.9607 3.3197 16 6 5.6904 6.9001 3.9143 17 8 5.1686 8.0010 4.5130 18 6 4.0035 7.8445 5.1732 19 1 3.5728 6.8601 5.2824 20 6 3.3581 8.9473 5.7116 21 7 3.8829 10.1463 5.5787 22 14 1.7435 8.7305 6.6256 23 1 1.3690 7.2935 6.6350 24 1 1.8966 9.2117 8.0220 25 1 0.6807 9.5139 5.9458 26 6 4.9722 5.7130 3.8965 27 6 4.1963 -2.0698 1.8615 28 6 4.1248 -2.0090 0.3336 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1229 1.4449 -0.1237 34 1 1.5791 1.9908 -0.8215 35 1 1.7813 1.9194 0.9454 36 1 1.5873 -1.7111 1.3076 37 1 1.7718 -0.1463 2.1357 38 1 4.8792 0.6333 0.4364 39 1 4.2245 3.1556 4.0203 40 1 7.1838 3.7832 2.2138 41 1 8.4520 5.8906 2.2485 42 1 7.5040 7.8843 3.3337 43 1 3.4312 10.9178 5.9551 44 1 3.9970 5.6637 4.3578 45 1 5.1724 -1.9298 2.3259 46 1 3.5297 -2.7671 2.3691 47 1 3.4112 -2.6662 -0.1632 48 1 5.0537 -1.8289 -0.2074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850698053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:34 Heat of formation + Delta-G solvation = -43.618748 kcal Electronic energy + Delta-G solvation = -30195.136818 eV Core-core repulsion = 26023.991403 eV Total energy + Delta-G solvation = -4171.145414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.14165 -39.82073 -38.71424 -37.80215 -36.56147 -35.45407 -34.50043 -33.11775 -32.27452 -29.57627 -28.75465 -27.82150 -27.29615 -25.65425 -25.11089 -23.04592 -22.17584 -21.89326 -20.84415 -20.23648 -19.65336 -18.88975 -18.02872 -17.37604 -16.81272 -16.33566 -16.06635 -15.49346 -15.25630 -15.05330 -14.83975 -14.56219 -14.34529 -14.16779 -14.00744 -13.75808 -13.66373 -13.52252 -13.04975 -12.69031 -12.47623 -12.44136 -12.15022 -11.94811 -11.91693 -11.76800 -11.61503 -11.57015 -11.34372 -11.13058 -11.00239 -10.99294 -10.87713 -10.83154 -10.45491 -10.42906 -9.92195 -9.64038 -9.41186 -9.21158 -8.85130 -7.84511 -7.24527 -6.48318 -4.08081 1.17527 2.05817 2.19018 2.34065 3.09589 3.12489 3.14847 3.17820 3.31980 3.47908 3.93997 4.13844 4.32912 4.39018 4.47982 4.53086 4.69973 4.80856 4.88629 5.06276 5.18732 5.20033 5.21752 5.37883 5.44483 5.47563 5.51449 5.60663 5.66580 5.69693 5.70179 5.75150 5.88891 5.94961 5.95259 6.06080 6.08569 6.12508 6.17212 6.21277 6.51891 6.70065 6.85098 6.95830 7.07254 7.21428 7.35334 7.44148 7.65503 7.72202 7.94871 8.00120 8.97203 9.65753 10.69517 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.002610 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.154274 B =10723.390162 C =12161.373246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.156 4.156 4 C -0.088 4.088 5 C 0.104 3.896 6 N -0.670 5.670 7 C 0.516 3.484 8 O -0.508 6.508 9 C 0.503 3.497 10 O -0.501 6.501 11 N -0.636 5.636 12 C 0.174 3.826 13 C -0.204 4.204 14 C -0.062 4.062 15 C -0.195 4.195 16 C 0.168 3.832 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.249 4.249 27 C -0.173 4.173 28 C -0.169 4.169 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.414 0.586 39 H 0.418 0.582 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.270 0.730 44 H 0.132 0.868 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -23.533 -10.108 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.214 4.214 4 C -0.126 4.126 5 C 0.018 3.982 6 N -0.324 5.324 7 C 0.297 3.703 8 O -0.382 6.382 9 C 0.284 3.716 10 O -0.375 6.375 11 N -0.281 5.281 12 C 0.081 3.919 13 C -0.225 4.225 14 C -0.081 4.081 15 C -0.215 4.215 16 C 0.113 3.887 17 O -0.077 6.077 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.271 4.271 27 C -0.211 4.211 28 C -0.206 4.206 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.252 0.748 39 H 0.256 0.744 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.080 0.920 44 H 0.150 0.850 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.063 -23.076 -10.012 25.239 hybrid contribution -0.869 -0.099 0.458 0.987 sum -2.932 -23.175 -9.555 25.239 Atomic orbital electron populations 1.21846 0.95133 1.01511 1.02042 1.21049 0.95580 0.96573 0.97727 1.22110 1.01965 0.95615 1.01695 1.21446 0.90074 1.01631 0.99452 1.20711 0.91590 0.79587 1.06359 1.45174 1.47223 1.19194 1.20776 1.20060 0.81548 0.85357 0.83371 1.90762 1.40218 1.75455 1.31747 1.20079 0.82307 0.85599 0.83650 1.90787 1.40059 1.75119 1.31580 1.43141 1.45770 1.18730 1.20488 1.17389 0.90955 0.83951 0.99603 1.20505 0.94356 0.99230 1.08413 1.20518 0.98502 0.91807 0.97301 1.20292 0.95386 0.99603 1.06226 1.19072 0.92046 0.86810 0.90739 1.84022 1.36705 1.28456 1.58481 1.21339 0.98064 0.95343 1.32146 0.89105 1.25285 0.99306 0.94243 0.97581 1.70044 1.38515 0.98438 1.42521 0.85661 0.80111 0.78862 0.78895 1.19070 1.20080 1.20116 1.20844 1.02670 0.92118 1.11450 1.23420 1.03045 0.99966 0.94651 1.23367 1.03192 0.99561 0.94487 0.92568 0.92610 0.92816 0.91215 0.91777 0.92862 0.93050 0.90595 0.89784 0.74795 0.74439 0.86395 0.86415 0.86193 0.92001 0.84991 0.88345 0.87839 0.87462 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.09 -0.74 2.90 -90.62 -0.26 -1.00 16 3 C -0.16 -1.58 7.94 37.16 0.30 -1.28 16 4 C -0.09 -0.74 4.51 -26.73 -0.12 -0.86 16 5 C 0.10 0.86 1.66 -131.82 -0.22 0.64 16 6 N -0.67 -6.55 3.13 -48.07 -0.15 -6.70 16 7 C 0.52 6.56 6.68 -11.63 -0.08 6.49 16 8 O -0.51 -7.30 15.20 5.49 0.08 -7.22 16 9 C 0.50 7.51 7.62 -11.63 -0.09 7.42 16 10 O -0.50 -8.27 14.21 5.48 0.08 -8.19 16 11 N -0.64 -10.15 5.32 -10.31 -0.05 -10.20 16 12 C 0.17 3.30 6.26 -83.77 -0.52 2.77 16 13 C -0.20 -3.78 8.66 -39.33 -0.34 -4.12 16 14 C -0.06 -1.13 10.03 -39.64 -0.40 -1.53 16 15 C -0.20 -4.08 9.99 -39.35 -0.39 -4.48 16 16 C 0.17 4.00 6.64 -39.13 -0.26 3.74 16 17 O -0.17 -4.87 9.76 0.06 0.00 -4.87 16 18 C -0.39 -10.80 9.44 30.88 0.29 -10.51 16 19 H 0.09 2.31 5.29 -52.48 -0.28 2.03 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 22 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 26 C -0.25 -5.37 9.05 -39.19 -0.35 -5.72 16 27 C -0.17 -1.27 10.15 -26.69 -0.27 -1.54 16 28 C -0.17 -0.98 10.18 -26.69 -0.27 -1.25 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.66 5.37 -51.93 -0.28 0.38 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.60 8.01 -51.93 -0.42 0.19 16 36 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.08 0.91 6.83 -51.93 -0.35 0.56 16 38 H 0.41 3.63 7.90 -40.82 -0.32 3.31 16 39 H 0.42 6.01 8.30 -40.82 -0.34 5.67 16 40 H 0.12 2.07 6.46 -52.49 -0.34 1.73 16 41 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -31.70 398.22 -7.89 -39.59 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.83 Total: 11.48 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.75 Total: -11.00 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.55 Total: -41.12 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.16 Total: -20.27 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.70 -7.89 -39.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850698053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.030 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds