Wall clock time and date at job start Sat Apr 11 2020 07:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47480 * 2 1 4 4 C 1.50701 * 110.43250 * 305.54167 * 3 2 1 5 5 O 1.21292 * 119.99692 * 247.77721 * 4 3 2 6 6 N 1.34779 * 120.00315 * 67.77687 * 4 3 2 7 7 C 1.39915 * 120.00081 * 184.89503 * 6 4 3 8 8 C 1.38929 * 120.04183 * 213.73996 * 7 6 4 9 9 C 1.38125 * 120.03737 * 180.02562 * 8 7 6 10 10 C 1.38213 * 120.12884 * 359.97438 * 9 8 7 11 11 C 1.38772 * 120.08359 * 0.04412 * 10 9 8 12 12 O 1.35896 * 120.01931 * 179.97438 * 11 10 9 13 13 C 1.42898 * 117.00163 * 359.97438 * 12 11 10 14 14 C 1.52994 * 109.46944 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46987 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99823 * 359.72804 * 15 14 13 17 17 C 1.37873 * 120.00125 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00196 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47329 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47031 * 120.00450 * 19 17 15 22 22 H 1.48502 * 109.47263 * 239.99996 * 19 17 15 23 23 C 1.38624 * 119.95621 * 0.23404 * 11 10 9 24 24 C 1.54622 * 110.49014 * 182.99319 * 3 2 1 25 25 C 1.54479 * 101.76877 * 216.39115 * 24 3 2 26 26 N 1.46762 * 105.46935 * 25.41723 * 25 24 3 27 27 C 1.34426 * 111.30451 * 342.98375 * 26 25 24 28 28 O 1.21278 * 124.94304 * 180.45177 * 27 26 25 29 29 H 1.09008 * 109.47377 * 186.59728 * 1 2 3 30 30 H 1.09000 * 109.47564 * 306.59367 * 1 2 3 31 31 H 1.09004 * 109.47031 * 66.59624 * 1 2 3 32 32 H 1.09006 * 109.47605 * 239.99751 * 2 1 3 33 33 H 1.09007 * 109.47392 * 119.99957 * 2 1 3 34 34 H 0.97004 * 119.99761 * 4.89266 * 6 4 3 35 35 H 1.07998 * 119.97904 * 359.97438 * 8 7 6 36 36 H 1.07996 * 119.93511 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.95958 * 180.02562 * 10 9 8 38 38 H 1.09005 * 109.46984 * 60.00473 * 13 12 11 39 39 H 1.09001 * 109.47288 * 300.00121 * 13 12 11 40 40 H 1.08994 * 109.47444 * 60.00513 * 14 13 12 41 41 H 1.08999 * 109.47368 * 299.99627 * 14 13 12 42 42 H 0.96993 * 120.00599 * 179.97438 * 18 17 15 43 43 H 1.07997 * 120.06151 * 179.72547 * 23 11 10 44 44 H 1.08996 * 110.97320 * 334.51502 * 24 3 2 45 45 H 1.09003 * 110.96582 * 98.23705 * 24 3 2 46 46 H 1.09000 * 110.24809 * 144.41444 * 25 24 3 47 47 H 1.08998 * 110.24548 * 266.42479 * 25 24 3 48 48 H 0.97004 * 124.35213 * 162.98381 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4415 2.2122 -1.1491 5 8 2.1467 2.5822 -2.0639 6 7 0.1225 2.4894 -1.1603 7 6 -0.4518 3.1132 -2.2732 8 6 -1.5070 4.0011 -2.1054 9 6 -2.0743 4.6165 -3.2042 10 6 -1.5939 4.3514 -4.4727 11 6 -0.5403 3.4651 -4.6464 12 8 -0.0694 3.2050 -5.8943 13 6 -0.7063 3.8788 -6.9817 14 6 -0.0454 3.4624 -8.2971 15 6 -0.7167 4.1734 -9.4438 16 1 -1.5360 4.8509 -9.2537 17 6 -0.2883 3.9552 -10.7360 18 7 0.7059 3.1262 -10.9680 19 14 -1.1209 4.8361 -12.1573 20 1 -2.2038 5.7070 -11.6338 21 1 -0.1228 5.6668 -12.8777 22 1 -1.6976 3.8351 -13.0904 23 6 0.0278 2.8411 -3.5466 24 6 3.5841 1.4706 -0.0756 25 6 3.9219 2.6777 0.8272 26 7 2.7928 2.7993 1.7569 27 6 1.7205 2.1199 1.3144 28 8 0.6523 2.0596 1.8854 29 1 -0.3634 -1.0209 0.1181 30 1 -0.3634 0.6126 0.8251 31 1 -0.3633 0.4082 -0.9432 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 -0.4285 2.2563 -0.3968 35 1 -1.8845 4.2097 -1.1152 36 1 -2.8942 5.3068 -3.0717 37 1 -2.0392 4.8344 -5.3299 38 1 -0.6068 4.9563 -6.8498 39 1 -1.7628 3.6117 -7.0058 40 1 -0.1452 2.3850 -8.4288 41 1 1.0112 3.7292 -8.2733 42 1 1.0071 2.9723 -11.8771 43 1 0.8449 2.1477 -3.6802 44 1 4.0111 0.5516 0.3258 45 1 3.9215 1.6410 -1.0980 46 1 4.8446 2.4912 1.3768 47 1 4.0156 3.5829 0.2273 48 1 2.8171 3.3049 2.5843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864933970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:50 Heat of formation + Delta-G solvation = -84.106333 kcal Electronic energy + Delta-G solvation = -30272.393145 eV Core-core repulsion = 26099.492057 eV Total energy + Delta-G solvation = -4172.901088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.98733 -40.11841 -39.05383 -37.36692 -36.69264 -35.23255 -34.24348 -33.33290 -30.86481 -30.45271 -29.65983 -29.04042 -27.88509 -25.08668 -23.94583 -23.36460 -22.51969 -22.11511 -21.71432 -20.43351 -19.85894 -18.35000 -17.87731 -17.79990 -16.42408 -16.27967 -15.99915 -15.81499 -15.48188 -15.28670 -15.01628 -14.86980 -14.54343 -14.41697 -14.23537 -14.07609 -13.75493 -13.56835 -13.30956 -13.00137 -12.87617 -12.71924 -12.31586 -12.16109 -11.90918 -11.79256 -11.75593 -11.52381 -11.40196 -11.30454 -10.93326 -10.81899 -10.55932 -10.36205 -10.17277 -9.88552 -9.80904 -9.64917 -9.63022 -9.26317 -8.44056 -8.25014 -7.81123 -6.08506 -4.13030 1.30025 1.64504 1.86331 2.31046 2.70200 2.88237 3.27771 3.34756 3.38455 3.63341 3.80802 3.87399 3.99173 4.11764 4.37903 4.45514 4.47654 4.71587 4.89458 5.00021 5.01172 5.06154 5.22032 5.27911 5.31062 5.37289 5.41635 5.46103 5.53231 5.57726 5.67081 5.71256 5.86885 5.96465 6.05332 6.06634 6.16589 6.27253 6.35976 6.43771 6.54359 6.60045 6.75824 6.96296 7.15333 7.53499 7.64447 7.67033 7.81277 7.83419 8.08916 8.25989 8.92862 9.51174 11.03165 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.002093 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.359328 B =13374.162276 C =14007.366163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 C -0.116 4.116 4 C 0.534 3.466 5 O -0.498 6.498 6 N -0.665 5.665 7 C 0.174 3.826 8 C -0.194 4.194 9 C -0.060 4.060 10 C -0.224 4.224 11 C 0.164 3.836 12 O -0.312 6.312 13 C 0.065 3.935 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.162 4.162 24 C -0.121 4.121 25 C 0.096 3.904 26 N -0.725 5.725 27 C 0.532 3.468 28 O -0.518 6.518 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.418 0.582 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.139 0.861 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -3.651 29.194 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.134 4.134 3 C -0.123 4.123 4 C 0.319 3.681 5 O -0.371 6.371 6 N -0.312 5.312 7 C 0.081 3.919 8 C -0.214 4.214 9 C -0.079 4.079 10 C -0.244 4.244 11 C 0.116 3.884 12 O -0.225 6.225 13 C -0.009 4.009 14 C -0.013 4.013 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.183 4.183 24 C -0.158 4.158 25 C -0.028 4.028 26 N -0.380 5.380 27 C 0.316 3.684 28 O -0.394 6.394 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.258 0.742 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.157 0.843 44 H 0.113 0.887 45 H 0.133 0.867 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.616 -3.714 28.539 29.006 hybrid contribution -0.710 0.761 -0.108 1.047 sum 2.905 -2.953 28.430 28.731 Atomic orbital electron populations 1.22339 0.94714 1.03589 1.03813 1.21390 0.97433 0.90707 1.03840 1.21717 0.98971 0.98500 0.93114 1.19787 0.81932 0.79256 0.87144 1.90793 1.59871 1.49972 1.36501 1.43817 1.09150 1.59126 1.19144 1.17307 0.94650 0.94138 0.85821 1.20647 1.00651 1.00805 0.99331 1.20666 0.98262 0.97591 0.91374 1.21397 1.00483 1.03683 0.98799 1.18933 0.91276 0.92263 0.85890 1.86187 1.58208 1.65752 1.12336 1.23352 0.96666 0.95382 0.85508 1.19133 0.96905 0.98042 0.87186 1.21008 1.17755 1.26629 0.90922 0.92301 1.24995 0.95047 0.95225 0.98980 1.69987 1.26621 1.35338 1.20811 0.86434 0.79398 0.79477 0.82090 1.19642 1.20847 1.20851 1.20226 1.04379 1.04928 0.88766 1.22766 0.90832 0.98798 1.03454 1.22212 0.89400 0.99589 0.91613 1.46164 1.14105 1.52346 1.25373 1.20337 0.83745 0.78505 0.85805 1.90716 1.24562 1.61980 1.62146 0.91613 0.89838 0.91661 0.89890 0.90189 0.74245 0.86086 0.85621 0.84979 0.93041 0.93040 0.95382 0.95335 0.92769 0.84297 0.88733 0.86675 0.89418 0.90211 0.74627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 8.30 37.15 0.31 -1.22 16 2 C -0.10 -0.71 4.95 -26.73 -0.13 -0.84 16 3 C -0.12 -1.00 0.57 -155.67 -0.09 -1.08 16 4 C 0.53 6.42 6.01 -10.98 -0.07 6.36 16 5 O -0.50 -7.58 13.19 5.55 0.07 -7.51 16 6 N -0.66 -7.91 3.66 -9.88 -0.04 -7.95 16 7 C 0.17 2.50 6.27 -83.72 -0.52 1.97 16 8 C -0.19 -2.49 9.96 -39.37 -0.39 -2.88 16 9 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16 10 C -0.22 -3.60 9.04 -39.39 -0.36 -3.95 16 11 C 0.16 3.04 6.68 -39.24 -0.26 2.78 16 12 O -0.31 -6.74 10.13 -19.41 -0.20 -6.94 16 13 C 0.06 1.43 4.68 37.15 0.17 1.60 16 14 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 15 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 19 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.16 -2.78 8.59 -39.24 -0.34 -3.12 16 24 C -0.12 -0.76 6.09 -25.10 -0.15 -0.91 16 25 C 0.10 0.50 7.78 -3.12 -0.02 0.47 16 26 N -0.72 -4.62 6.24 -59.20 -0.37 -4.99 16 27 C 0.53 4.79 6.88 -10.86 -0.07 4.71 16 28 O -0.52 -5.84 14.86 5.56 0.08 -5.76 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.08 0.75 5.09 -51.93 -0.26 0.48 16 31 H 0.06 0.61 6.03 -51.93 -0.31 0.29 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.42 4.30 5.76 -40.82 -0.24 4.07 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 38 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 39 H 0.05 1.06 7.66 -51.93 -0.40 0.67 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.14 2.52 6.45 -52.49 -0.34 2.18 16 44 H 0.09 0.38 7.91 -51.93 -0.41 -0.03 16 45 H 0.11 0.89 6.86 -51.93 -0.36 0.53 16 46 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.41 1.91 8.96 -40.82 -0.37 1.55 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -34.14 385.81 -8.56 -42.70 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.76 Total: 4.50 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.89 Total: -10.29 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.33 Total: -38.93 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.04 Total: -20.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.14 -8.56 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864933970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.403 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds