Wall clock time and date at job start Sat Apr 11 2020 07:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47480 * 2 1 4 4 C 1.50701 * 110.43250 * 305.54167 * 3 2 1 5 5 O 1.21292 * 119.99692 * 247.77721 * 4 3 2 6 6 N 1.34779 * 120.00315 * 67.77687 * 4 3 2 7 7 C 1.39915 * 120.00081 * 184.89503 * 6 4 3 8 8 C 1.38929 * 120.04183 * 213.73996 * 7 6 4 9 9 C 1.38125 * 120.03737 * 180.02562 * 8 7 6 10 10 C 1.38213 * 120.12884 * 359.97438 * 9 8 7 11 11 C 1.38772 * 120.08359 * 0.04412 * 10 9 8 12 12 O 1.35896 * 120.01931 * 179.97438 * 11 10 9 13 13 C 1.42898 * 117.00163 * 359.97438 * 12 11 10 14 14 C 1.52994 * 109.46944 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46987 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99823 * 359.72804 * 15 14 13 17 17 C 1.37873 * 120.00125 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00196 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47329 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47031 * 120.00450 * 19 17 15 22 22 H 1.48502 * 109.47263 * 239.99996 * 19 17 15 23 23 C 1.38624 * 119.95621 * 0.23404 * 11 10 9 24 24 C 1.54622 * 110.49014 * 182.99319 * 3 2 1 25 25 C 1.54479 * 101.76877 * 216.39115 * 24 3 2 26 26 N 1.46762 * 105.46935 * 25.41723 * 25 24 3 27 27 C 1.34426 * 111.30451 * 342.98375 * 26 25 24 28 28 O 1.21278 * 124.94304 * 180.45177 * 27 26 25 29 29 H 1.09008 * 109.47377 * 186.59728 * 1 2 3 30 30 H 1.09000 * 109.47564 * 306.59367 * 1 2 3 31 31 H 1.09004 * 109.47031 * 66.59624 * 1 2 3 32 32 H 1.09006 * 109.47605 * 239.99751 * 2 1 3 33 33 H 1.09007 * 109.47392 * 119.99957 * 2 1 3 34 34 H 0.97004 * 119.99761 * 4.89266 * 6 4 3 35 35 H 1.07998 * 119.97904 * 359.97438 * 8 7 6 36 36 H 1.07996 * 119.93511 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.95958 * 180.02562 * 10 9 8 38 38 H 1.09005 * 109.46984 * 60.00473 * 13 12 11 39 39 H 1.09001 * 109.47288 * 300.00121 * 13 12 11 40 40 H 1.08994 * 109.47444 * 60.00513 * 14 13 12 41 41 H 1.08999 * 109.47368 * 299.99627 * 14 13 12 42 42 H 0.96993 * 120.00599 * 179.97438 * 18 17 15 43 43 H 1.07997 * 120.06151 * 179.72547 * 23 11 10 44 44 H 1.08996 * 110.97320 * 334.51502 * 24 3 2 45 45 H 1.09003 * 110.96582 * 98.23705 * 24 3 2 46 46 H 1.09000 * 110.24809 * 144.41444 * 25 24 3 47 47 H 1.08998 * 110.24548 * 266.42479 * 25 24 3 48 48 H 0.97004 * 124.35213 * 162.98381 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4415 2.2122 -1.1491 5 8 2.1467 2.5822 -2.0639 6 7 0.1225 2.4894 -1.1603 7 6 -0.4518 3.1132 -2.2732 8 6 -1.5070 4.0011 -2.1054 9 6 -2.0743 4.6165 -3.2042 10 6 -1.5939 4.3514 -4.4727 11 6 -0.5403 3.4651 -4.6464 12 8 -0.0694 3.2050 -5.8943 13 6 -0.7063 3.8788 -6.9817 14 6 -0.0454 3.4624 -8.2971 15 6 -0.7167 4.1734 -9.4438 16 1 -1.5360 4.8509 -9.2537 17 6 -0.2883 3.9552 -10.7360 18 7 0.7059 3.1262 -10.9680 19 14 -1.1209 4.8361 -12.1573 20 1 -2.2038 5.7070 -11.6338 21 1 -0.1228 5.6668 -12.8777 22 1 -1.6976 3.8351 -13.0904 23 6 0.0278 2.8411 -3.5466 24 6 3.5841 1.4706 -0.0756 25 6 3.9219 2.6777 0.8272 26 7 2.7928 2.7993 1.7569 27 6 1.7205 2.1199 1.3144 28 8 0.6523 2.0596 1.8854 29 1 -0.3634 -1.0209 0.1181 30 1 -0.3634 0.6126 0.8251 31 1 -0.3633 0.4082 -0.9432 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 -0.4285 2.2563 -0.3968 35 1 -1.8845 4.2097 -1.1152 36 1 -2.8942 5.3068 -3.0717 37 1 -2.0392 4.8344 -5.3299 38 1 -0.6068 4.9563 -6.8498 39 1 -1.7628 3.6117 -7.0058 40 1 -0.1452 2.3850 -8.4288 41 1 1.0112 3.7292 -8.2733 42 1 1.0071 2.9723 -11.8771 43 1 0.8449 2.1477 -3.6802 44 1 4.0111 0.5516 0.3258 45 1 3.9215 1.6410 -1.0980 46 1 4.8446 2.4912 1.3768 47 1 4.0156 3.5829 0.2273 48 1 2.8171 3.3049 2.5843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864933970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:49 Heat of formation + Delta-G solvation = -107.437768 kcal Electronic energy + Delta-G solvation = -30273.404871 eV Core-core repulsion = 26099.492057 eV Total energy + Delta-G solvation = -4173.912815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.78059 -41.24270 -40.21188 -38.57533 -37.46190 -36.16060 -35.49440 -35.03542 -32.61869 -31.08112 -31.04015 -30.31565 -28.53421 -27.02781 -25.02108 -24.03814 -23.55754 -23.45347 -22.67072 -21.86417 -20.77279 -19.61822 -18.72074 -18.47424 -18.33731 -17.37590 -17.06655 -16.94863 -16.88325 -16.71718 -16.53499 -15.90844 -15.62994 -15.28015 -14.93508 -14.83336 -14.61437 -14.49098 -14.38097 -14.30366 -14.26988 -14.09965 -13.42891 -13.37150 -13.26639 -12.84883 -12.77736 -12.67074 -12.55802 -12.42102 -12.34255 -12.18241 -11.89649 -11.78916 -11.59858 -11.41282 -11.30393 -11.07170 -10.71208 -10.63502 -10.19353 -9.47896 -9.07924 -8.26949 -6.40938 0.13616 0.43000 1.09104 1.37522 1.40962 1.42225 1.55762 1.83731 2.24892 2.29528 2.50816 2.76037 3.02343 3.07450 3.25568 3.43263 3.69619 3.86824 3.95181 4.12669 4.15778 4.19618 4.24508 4.26506 4.30207 4.39243 4.40238 4.51497 4.65011 4.68312 4.73547 4.75094 4.95662 4.98224 4.98956 5.07710 5.18626 5.22321 5.30344 5.31540 5.36458 5.45282 5.45972 5.62717 5.67280 5.83727 5.87855 6.06038 6.17048 6.52712 6.74151 6.85059 7.05965 7.29296 8.86696 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.002093 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.359328 B =13374.162276 C =14007.366163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 C -0.113 4.113 4 C 0.529 3.471 5 O -0.536 6.536 6 N -0.657 5.657 7 C 0.174 3.826 8 C -0.180 4.180 9 C -0.049 4.049 10 C -0.231 4.231 11 C 0.128 3.872 12 O -0.342 6.342 13 C 0.084 3.916 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.073 0.927 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.978 3.022 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.179 4.179 24 C -0.120 4.120 25 C 0.096 3.904 26 N -0.713 5.713 27 C 0.528 3.472 28 O -0.544 6.544 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.427 0.573 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.136 0.864 38 H 0.062 0.938 39 H 0.065 0.935 40 H -0.003 1.003 41 H -0.004 1.004 42 H 0.267 0.733 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.123 0.877 47 H 0.069 0.931 48 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 -2.493 31.407 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.134 4.134 3 C -0.120 4.120 4 C 0.317 3.683 5 O -0.412 6.412 6 N -0.306 5.306 7 C 0.079 3.921 8 C -0.200 4.200 9 C -0.068 4.068 10 C -0.250 4.250 11 C 0.082 3.918 12 O -0.257 6.257 13 C 0.010 3.990 14 C -0.010 4.010 15 C -0.581 4.581 16 H 0.091 0.909 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.802 3.198 20 H -0.180 1.180 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.200 4.200 24 C -0.158 4.158 25 C -0.028 4.028 26 N -0.368 5.368 27 C 0.312 3.688 28 O -0.422 6.422 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.269 0.731 35 H 0.174 0.826 36 H 0.184 0.816 37 H 0.154 0.846 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.076 0.924 43 H 0.134 0.866 44 H 0.142 0.858 45 H 0.116 0.884 46 H 0.141 0.859 47 H 0.088 0.912 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.347 -2.550 30.812 31.006 hybrid contribution -0.267 0.364 -0.642 0.785 sum 2.080 -2.186 30.170 30.320 Atomic orbital electron populations 1.22306 0.95369 1.04053 1.02576 1.21459 0.96891 0.90085 1.04921 1.21760 1.00309 0.98450 0.91483 1.20473 0.81640 0.78638 0.87598 1.90783 1.60687 1.51456 1.38244 1.43855 1.09400 1.58673 1.18628 1.17459 0.94908 0.94281 0.85422 1.21089 0.99072 0.98861 1.01002 1.21111 0.98451 0.97243 0.89947 1.21545 0.99811 1.03188 1.00471 1.19205 0.93337 0.94637 0.84604 1.86096 1.59287 1.66620 1.13646 1.22917 0.96504 0.95715 0.83886 1.18979 0.95544 0.96148 0.90332 1.21421 1.18191 1.26920 0.91592 0.90890 1.26082 0.95594 0.95911 1.02305 1.70136 1.28302 1.36958 1.21791 0.85203 0.78518 0.78276 0.77848 1.17964 1.20270 1.20204 1.20172 1.04506 1.05386 0.89974 1.22846 0.89128 1.00762 1.03071 1.22340 0.90254 0.98638 0.91523 1.46157 1.13668 1.51290 1.25642 1.20362 0.83895 0.78788 0.85723 1.90703 1.25570 1.63075 1.62821 0.90485 0.90353 0.93305 0.89806 0.87997 0.73119 0.82554 0.81613 0.84591 0.91982 0.91677 0.98411 0.98592 0.92439 0.86552 0.85830 0.88429 0.85864 0.91232 0.73445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 8.30 71.98 0.60 -2.30 16 2 C -0.10 -1.30 4.95 30.59 0.15 -1.15 16 3 C -0.11 -1.85 0.57 -52.93 -0.03 -1.88 16 4 C 0.53 12.95 6.01 87.66 0.53 13.48 16 5 O -0.54 -17.21 13.19 -3.07 -0.04 -17.25 16 6 N -0.66 -15.51 3.66 -303.54 -1.11 -16.62 16 7 C 0.17 4.93 6.27 38.14 0.24 5.17 16 8 C -0.18 -4.17 9.96 22.41 0.22 -3.95 16 9 C -0.05 -1.17 10.03 22.24 0.22 -0.94 16 10 C -0.23 -7.24 9.04 22.39 0.20 -7.03 16 11 C 0.13 4.95 6.68 22.49 0.15 5.10 16 12 O -0.34 -15.74 10.13 -92.38 -0.94 -16.68 16 13 C 0.08 3.83 4.68 71.98 0.34 4.16 16 14 C 0.03 1.54 5.34 29.85 0.16 1.70 16 15 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 16 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 17 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 18 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 19 Si 0.98 44.02 29.54 68.60 2.03 46.04 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 C -0.18 -6.46 8.59 22.49 0.19 -6.27 16 24 C -0.12 -1.36 6.09 31.65 0.19 -1.17 16 25 C 0.10 0.80 7.78 86.83 0.68 1.48 16 26 N -0.71 -7.62 6.24 -459.81 -2.87 -10.49 16 27 C 0.53 8.70 6.88 87.90 0.60 9.31 16 28 O -0.54 -11.48 14.86 -3.02 -0.04 -11.52 16 29 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.33 5.09 -2.39 -0.01 1.32 16 31 H 0.05 0.91 6.03 -2.39 -0.01 0.89 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.43 8.43 5.76 -92.71 -0.53 7.89 16 35 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 37 H 0.14 4.09 6.29 -2.91 -0.02 4.07 16 38 H 0.06 2.65 7.66 -2.38 -0.02 2.63 16 39 H 0.07 2.74 7.66 -2.39 -0.02 2.72 16 40 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.12 4.63 6.45 -2.91 -0.02 4.61 16 44 H 0.12 0.67 7.91 -2.39 -0.02 0.66 16 45 H 0.10 1.53 6.86 -2.39 -0.02 1.51 16 46 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.42 2.95 8.96 -92.71 -0.83 2.12 16 Total: -1.00 -78.36 385.81 2.09 -76.26 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.36 Total: 22.61 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 5.14 Total: -14.85 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -3.69 Total: -84.61 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.02 Total: -45.46 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.36 2.09 -76.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864933970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.174 kcal (2) G-P(sol) polarization free energy of solvation -78.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds