Wall clock time and date at job start Sat Apr 11 2020 07:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46972 * 2 1 4 4 C 1.46508 * 120.00209 * 269.99769 * 3 2 1 5 5 C 1.34775 * 120.00055 * 89.99859 * 3 2 1 6 6 O 1.21283 * 120.00093 * 2.56571 * 5 3 2 7 7 C 1.50697 * 120.00110 * 182.56258 * 5 3 2 8 8 H 1.08995 * 109.47579 * 317.10839 * 7 5 3 9 9 C 1.53003 * 109.47008 * 77.11035 * 7 5 3 10 10 N 1.46503 * 109.47408 * 197.10795 * 7 5 3 11 11 C 1.34777 * 120.00262 * 155.00095 * 10 7 5 12 12 O 1.21718 * 119.99858 * 0.02562 * 11 10 7 13 13 C 1.46257 * 120.00057 * 180.02562 * 11 10 7 14 14 C 1.35020 * 119.99760 * 173.08587 * 13 11 10 15 15 C 1.46958 * 120.00392 * 345.07805 * 14 13 11 16 16 C 1.40025 * 120.09594 * 318.44422 * 15 14 13 17 17 C 1.37605 * 119.89092 * 179.69419 * 16 15 14 18 18 C 1.39177 * 120.10155 * 0.59752 * 17 16 15 19 19 O 1.35566 * 119.89617 * 179.69209 * 18 17 16 20 20 C 1.34788 * 116.99789 * 185.73486 * 19 18 17 21 21 H 1.07995 * 119.99902 * 5.25830 * 20 19 18 22 22 C 1.38720 * 119.99788 * 185.25287 * 20 19 18 23 23 N 1.31514 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46979 * 90.00049 * 24 22 20 26 26 H 1.48499 * 109.47293 * 209.99823 * 24 22 20 27 27 H 1.48500 * 109.46990 * 330.00334 * 24 22 20 28 28 C 1.39173 * 120.20286 * 359.67520 * 18 17 16 29 29 C 1.37601 * 120.10572 * 0.02562 * 28 18 17 30 30 H 1.08995 * 109.47722 * 299.99889 * 1 2 3 31 31 H 1.08997 * 109.46968 * 60.00400 * 1 2 3 32 32 H 1.09006 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47437 * 240.00339 * 2 1 3 34 34 H 1.08999 * 109.47435 * 119.99810 * 2 1 3 35 35 H 1.08993 * 109.46824 * 274.75454 * 4 3 2 36 36 H 1.08998 * 109.46867 * 34.75324 * 4 3 2 37 37 H 1.08998 * 109.46987 * 154.74924 * 4 3 2 38 38 H 1.09004 * 109.46958 * 175.41073 * 9 7 5 39 39 H 1.08996 * 109.46875 * 55.41092 * 9 7 5 40 40 H 1.08998 * 109.46843 * 295.40856 * 9 7 5 41 41 H 0.97006 * 119.99818 * 335.00550 * 10 7 5 42 42 H 1.08003 * 119.99595 * 353.09012 * 13 11 10 43 43 H 1.08005 * 119.99481 * 165.08439 * 14 13 11 44 44 H 1.08000 * 120.05649 * 359.97438 * 16 15 14 45 45 H 1.07997 * 119.94954 * 180.27054 * 17 16 15 46 46 H 0.96997 * 119.99634 * 180.02562 * 23 22 20 47 47 H 1.08003 * 119.94719 * 179.97438 * 28 18 17 48 48 H 1.07990 * 120.05688 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 2.2429 2.0166 1.1672 6 8 2.0854 1.4301 2.2170 7 6 2.6898 3.4558 1.1678 8 1 3.4493 3.6008 0.3997 9 6 1.4916 4.3620 0.8778 10 7 3.2505 3.7924 2.4788 11 6 4.1451 4.7942 2.5920 12 8 4.4867 5.4194 1.6052 13 6 4.7053 5.1299 3.9006 14 6 5.7018 6.0359 3.9961 15 6 6.4453 6.4399 2.7945 16 6 6.8199 5.4812 1.8452 17 6 7.5105 5.8650 0.7186 18 6 7.8474 7.2019 0.5280 19 8 8.5333 7.5745 -0.5804 20 6 8.9324 8.8601 -0.6496 21 1 8.7777 9.5195 0.1915 22 6 9.5421 9.3359 -1.8012 23 7 9.7301 8.5329 -2.8256 24 14 10.0946 11.1178 -1.8974 25 1 11.4927 11.2295 -1.4093 26 1 10.0235 11.5827 -3.3060 27 1 9.2071 11.9575 -1.0535 28 6 7.4821 8.1574 1.4717 29 6 6.7860 7.7838 2.5984 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2640 1.8323 -1.6259 36 1 1.5271 1.7490 -2.0056 37 1 2.1780 3.1482 -1.1186 38 1 1.7971 5.4052 0.9586 39 1 0.6994 4.1585 1.5982 40 1 1.1248 4.1678 -0.1301 41 1 2.9780 3.2943 3.2653 42 1 4.3219 4.6529 4.7906 43 1 5.9525 6.4637 4.9556 44 1 6.5634 4.4428 1.9948 45 1 7.7961 5.1270 -0.0163 46 1 10.1567 8.8657 -3.6307 47 1 7.7460 9.1936 1.3199 48 1 6.5026 8.5259 3.3299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492043435.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:16 Heat of formation + Delta-G solvation = -39.732060 kcal Electronic energy + Delta-G solvation = -29924.473842 eV Core-core repulsion = 25753.496967 eV Total energy + Delta-G solvation = -4170.976875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.70292 -39.49057 -38.66410 -36.62750 -36.20495 -34.96586 -33.04508 -32.22731 -31.93099 -30.31079 -30.12369 -27.92809 -27.13801 -25.51317 -25.13166 -23.74262 -22.31243 -21.72880 -20.83378 -19.78521 -19.15277 -17.95944 -17.60719 -17.09004 -16.69250 -16.41377 -15.95959 -15.46161 -14.81464 -14.70804 -14.57224 -14.27464 -14.14519 -13.88149 -13.73680 -13.59838 -13.36773 -13.28129 -13.00602 -12.96457 -12.80152 -12.60921 -12.49422 -12.32298 -12.16753 -12.11641 -11.80545 -11.69313 -11.41126 -11.35769 -11.01849 -10.70127 -10.60090 -10.41039 -10.05428 -9.54695 -9.42146 -9.16446 -9.10254 -9.01946 -8.69857 -7.95849 -6.87157 -6.47216 -4.02610 1.23439 2.24545 2.41454 2.51069 2.70580 3.13197 3.14043 3.18344 3.36581 3.63619 3.96154 4.09363 4.67364 4.69546 4.71925 4.80462 4.87032 4.94323 5.03270 5.09807 5.13168 5.15696 5.26043 5.28373 5.33203 5.35221 5.46507 5.51760 5.58510 5.66144 5.74652 5.79412 5.84995 5.94989 6.11358 6.25330 6.33748 6.41610 6.48413 6.60569 6.78409 6.94914 7.03072 7.11809 7.35492 7.45106 7.49351 7.68473 7.77399 7.91588 7.99534 8.52596 8.98616 9.70608 10.70665 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002337 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.985421 B =11979.491656 C =13359.176476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.614 5.614 4 C 0.065 3.935 5 C 0.516 3.484 6 O -0.538 6.538 7 C 0.127 3.873 8 H 0.112 0.888 9 C -0.159 4.159 10 N -0.722 5.722 11 C 0.545 3.455 12 O -0.514 6.514 13 C -0.268 4.268 14 C 0.029 3.971 15 C -0.186 4.186 16 C 0.006 3.994 17 C -0.202 4.202 18 C 0.171 3.829 19 O -0.172 6.172 20 C -0.389 4.389 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.248 4.248 29 C -0.041 4.041 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.405 0.595 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.271 0.729 47 H 0.126 0.874 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.710 -12.669 7.299 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.348 5.348 4 C -0.078 4.078 5 C 0.303 3.697 6 O -0.414 6.414 7 C 0.018 3.982 8 H 0.130 0.870 9 C -0.217 4.217 10 N -0.377 5.377 11 C 0.335 3.665 12 O -0.390 6.390 13 C -0.289 4.289 14 C 0.009 3.991 15 C -0.187 4.187 16 C -0.012 4.012 17 C -0.221 4.221 18 C 0.116 3.884 19 O -0.075 6.075 20 C -0.465 4.465 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.268 4.268 29 C -0.059 4.059 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.241 0.759 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.081 0.919 47 H 0.144 0.856 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.359 -12.642 6.655 21.719 hybrid contribution -0.087 0.603 0.201 0.642 sum -16.446 -12.038 6.857 21.504 Atomic orbital electron populations 1.22126 0.95750 1.02317 1.02360 1.21455 0.94452 0.81982 1.03416 1.47832 1.66153 1.14432 1.06333 1.22070 1.02077 0.98563 0.85072 1.20766 0.76687 0.88699 0.83525 1.90668 1.51979 1.67754 1.31017 1.20672 0.97944 0.90512 0.89034 0.87021 1.22162 0.96654 1.00952 1.01945 1.45802 1.45962 1.36790 1.09148 1.18487 0.78452 0.79373 0.90175 1.90983 1.59268 1.50064 1.38711 1.22543 1.03662 1.06697 0.95970 1.22331 0.89551 0.89926 0.97250 1.18302 1.08529 0.94031 0.97816 1.20474 0.92241 0.97130 0.91389 1.19995 1.08350 0.93637 1.00117 1.19536 0.89005 0.92878 0.87010 1.83921 1.60051 1.29637 1.33841 1.21388 1.38549 0.84724 1.01876 0.88904 1.25330 0.96800 1.00172 0.94286 1.70024 1.39531 1.35596 1.04244 0.85699 0.79207 0.80360 0.78103 1.19828 1.20237 1.19130 1.20971 1.08357 1.00058 0.97389 1.20768 0.94861 0.94178 0.96139 0.92255 0.92496 0.91485 0.90321 0.89719 0.91735 0.90744 0.89836 0.90209 0.92010 0.91135 0.75856 0.85972 0.86002 0.88112 0.86858 0.91949 0.85628 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.11 0.82 6.17 -4.04 -0.02 0.79 16 3 N -0.61 -5.43 2.87 -181.57 -0.52 -5.95 16 4 C 0.06 0.43 10.00 59.85 0.60 1.03 16 5 C 0.52 5.86 6.95 -10.99 -0.08 5.78 16 6 O -0.54 -7.45 15.45 5.55 0.09 -7.36 16 7 C 0.13 1.46 2.12 -69.08 -0.15 1.32 16 8 H 0.11 1.40 6.62 -51.93 -0.34 1.05 16 9 C -0.16 -1.58 9.20 37.16 0.34 -1.24 16 10 N -0.72 -9.02 5.03 -56.38 -0.28 -9.30 16 11 C 0.54 8.17 6.66 -13.04 -0.09 8.08 16 12 O -0.51 -9.66 12.14 5.17 0.06 -9.60 16 13 C -0.27 -3.51 9.85 -37.51 -0.37 -3.88 16 14 C 0.03 0.41 9.80 -37.20 -0.36 0.05 16 15 C -0.19 -3.42 4.52 -105.03 -0.47 -3.89 16 16 C 0.01 0.12 6.72 -39.14 -0.26 -0.14 16 17 C -0.20 -4.57 9.97 -39.46 -0.39 -4.96 16 18 C 0.17 4.29 6.66 -38.89 -0.26 4.03 16 19 O -0.17 -5.01 9.74 0.73 0.01 -5.00 16 20 C -0.39 -10.97 9.44 30.91 0.29 -10.68 16 21 H 0.09 2.42 5.27 -52.49 -0.28 2.15 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 24 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 28 C -0.25 -5.62 9.11 -39.47 -0.36 -5.98 16 29 C -0.04 -0.79 9.79 -39.14 -0.38 -1.18 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.08 0.75 7.39 -51.93 -0.38 0.37 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 37 H 0.08 0.57 4.49 -51.93 -0.23 0.33 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.56 6.29 -51.93 -0.33 0.23 16 41 H 0.41 4.62 7.70 -40.82 -0.31 4.30 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 44 H 0.10 1.84 7.03 -52.49 -0.37 1.47 16 45 H 0.11 2.49 8.06 -52.49 -0.42 2.07 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.13 2.82 5.69 -52.48 -0.30 2.52 16 48 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -34.60 398.51 -7.34 -41.95 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.75 Total: 8.85 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.68 Total: -10.61 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.05 Total: -39.75 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.16 Total: -21.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.60 -7.34 -41.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492043435.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.215 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds