Wall clock time and date at job start Sat Apr 11 2020 07:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46972 * 2 1 4 4 C 1.46508 * 120.00209 * 269.99769 * 3 2 1 5 5 C 1.34775 * 120.00055 * 89.99859 * 3 2 1 6 6 O 1.21283 * 120.00093 * 2.56571 * 5 3 2 7 7 C 1.50697 * 120.00110 * 182.56258 * 5 3 2 8 8 H 1.08995 * 109.47579 * 317.10839 * 7 5 3 9 9 C 1.53003 * 109.47008 * 77.11035 * 7 5 3 10 10 N 1.46503 * 109.47408 * 197.10795 * 7 5 3 11 11 C 1.34777 * 120.00262 * 155.00095 * 10 7 5 12 12 O 1.21718 * 119.99858 * 0.02562 * 11 10 7 13 13 C 1.46257 * 120.00057 * 180.02562 * 11 10 7 14 14 C 1.35020 * 119.99760 * 173.08587 * 13 11 10 15 15 C 1.46958 * 120.00392 * 345.07805 * 14 13 11 16 16 C 1.40025 * 120.09594 * 318.44422 * 15 14 13 17 17 C 1.37605 * 119.89092 * 179.69419 * 16 15 14 18 18 C 1.39177 * 120.10155 * 0.59752 * 17 16 15 19 19 O 1.35566 * 119.89617 * 179.69209 * 18 17 16 20 20 C 1.34788 * 116.99789 * 185.73486 * 19 18 17 21 21 H 1.07995 * 119.99902 * 5.25830 * 20 19 18 22 22 C 1.38720 * 119.99788 * 185.25287 * 20 19 18 23 23 N 1.31514 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46979 * 90.00049 * 24 22 20 26 26 H 1.48499 * 109.47293 * 209.99823 * 24 22 20 27 27 H 1.48500 * 109.46990 * 330.00334 * 24 22 20 28 28 C 1.39173 * 120.20286 * 359.67520 * 18 17 16 29 29 C 1.37601 * 120.10572 * 0.02562 * 28 18 17 30 30 H 1.08995 * 109.47722 * 299.99889 * 1 2 3 31 31 H 1.08997 * 109.46968 * 60.00400 * 1 2 3 32 32 H 1.09006 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47437 * 240.00339 * 2 1 3 34 34 H 1.08999 * 109.47435 * 119.99810 * 2 1 3 35 35 H 1.08993 * 109.46824 * 274.75454 * 4 3 2 36 36 H 1.08998 * 109.46867 * 34.75324 * 4 3 2 37 37 H 1.08998 * 109.46987 * 154.74924 * 4 3 2 38 38 H 1.09004 * 109.46958 * 175.41073 * 9 7 5 39 39 H 1.08996 * 109.46875 * 55.41092 * 9 7 5 40 40 H 1.08998 * 109.46843 * 295.40856 * 9 7 5 41 41 H 0.97006 * 119.99818 * 335.00550 * 10 7 5 42 42 H 1.08003 * 119.99595 * 353.09012 * 13 11 10 43 43 H 1.08005 * 119.99481 * 165.08439 * 14 13 11 44 44 H 1.08000 * 120.05649 * 359.97438 * 16 15 14 45 45 H 1.07997 * 119.94954 * 180.27054 * 17 16 15 46 46 H 0.96997 * 119.99634 * 180.02562 * 23 22 20 47 47 H 1.08003 * 119.94719 * 179.97438 * 28 18 17 48 48 H 1.07990 * 120.05688 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 2.2429 2.0166 1.1672 6 8 2.0854 1.4301 2.2170 7 6 2.6898 3.4558 1.1678 8 1 3.4493 3.6008 0.3997 9 6 1.4916 4.3620 0.8778 10 7 3.2505 3.7924 2.4788 11 6 4.1451 4.7942 2.5920 12 8 4.4867 5.4194 1.6052 13 6 4.7053 5.1299 3.9006 14 6 5.7018 6.0359 3.9961 15 6 6.4453 6.4399 2.7945 16 6 6.8199 5.4812 1.8452 17 6 7.5105 5.8650 0.7186 18 6 7.8474 7.2019 0.5280 19 8 8.5333 7.5745 -0.5804 20 6 8.9324 8.8601 -0.6496 21 1 8.7777 9.5195 0.1915 22 6 9.5421 9.3359 -1.8012 23 7 9.7301 8.5329 -2.8256 24 14 10.0946 11.1178 -1.8974 25 1 11.4927 11.2295 -1.4093 26 1 10.0235 11.5827 -3.3060 27 1 9.2071 11.9575 -1.0535 28 6 7.4821 8.1574 1.4717 29 6 6.7860 7.7838 2.5984 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2640 1.8323 -1.6259 36 1 1.5271 1.7490 -2.0056 37 1 2.1780 3.1482 -1.1186 38 1 1.7971 5.4052 0.9586 39 1 0.6994 4.1585 1.5982 40 1 1.1248 4.1678 -0.1301 41 1 2.9780 3.2943 3.2653 42 1 4.3219 4.6529 4.7906 43 1 5.9525 6.4637 4.9556 44 1 6.5634 4.4428 1.9948 45 1 7.7961 5.1270 -0.0163 46 1 10.1567 8.8657 -3.6307 47 1 7.7460 9.1936 1.3199 48 1 6.5026 8.5259 3.3299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492043435.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:15 Heat of formation + Delta-G solvation = -63.146269 kcal Electronic energy + Delta-G solvation = -29925.489158 eV Core-core repulsion = 25753.496967 eV Total energy + Delta-G solvation = -4171.992191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.66644 -40.88389 -40.21011 -38.23697 -37.04481 -36.08814 -34.58720 -33.94663 -32.80734 -31.81923 -31.18099 -29.45124 -27.80528 -27.41913 -26.04666 -24.80410 -23.62463 -23.23304 -22.17741 -20.89924 -20.17176 -19.74645 -18.96581 -18.41938 -17.87919 -17.46146 -16.75195 -16.55384 -16.36690 -16.20298 -16.02856 -15.59104 -15.48538 -15.16414 -14.99178 -14.62310 -14.52785 -14.42321 -14.34766 -14.19391 -13.78196 -13.63220 -13.58165 -13.49735 -13.35058 -13.04234 -12.92253 -12.87874 -12.69160 -12.59388 -12.31659 -12.23407 -12.11209 -11.97733 -11.26255 -11.00449 -10.92051 -10.72454 -10.38589 -10.14928 -9.80759 -9.60645 -8.55604 -8.47997 -6.14328 -0.04231 0.71921 1.11957 1.34989 1.35698 1.46559 1.53098 1.72656 2.18007 2.36496 2.47392 2.88100 3.23754 3.26795 3.50524 3.91740 4.00911 4.02410 4.07773 4.08994 4.15655 4.17825 4.20418 4.25866 4.49575 4.53492 4.56177 4.60443 4.62643 4.68940 4.77976 4.79915 4.86525 4.96972 5.05192 5.10048 5.12309 5.24636 5.26032 5.26799 5.37134 5.43953 5.49807 5.68073 5.73319 5.85010 6.03076 6.16864 6.24865 6.61469 6.91750 6.96523 7.36464 7.78317 8.75506 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002337 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.985421 B =11979.491656 C =13359.176476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.104 3.896 3 N -0.609 5.609 4 C 0.060 3.940 5 C 0.515 3.485 6 O -0.567 6.567 7 C 0.125 3.875 8 H 0.099 0.901 9 C -0.150 4.150 10 N -0.710 5.710 11 C 0.535 3.465 12 O -0.559 6.559 13 C -0.238 4.238 14 C 0.012 3.988 15 C -0.159 4.159 16 C 0.007 3.993 17 C -0.217 4.217 18 C 0.128 3.872 19 O -0.229 6.229 20 C -0.414 4.414 21 H 0.103 0.897 22 C -0.024 4.024 23 N -0.920 5.920 24 Si 1.021 2.979 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.252 1.252 28 C -0.256 4.256 29 C -0.046 4.046 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.414 0.586 42 H 0.168 0.832 43 H 0.170 0.830 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.273 0.727 47 H 0.120 0.880 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.034 -12.973 10.085 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.341 5.341 4 C -0.082 4.082 5 C 0.302 3.698 6 O -0.447 6.447 7 C 0.016 3.984 8 H 0.117 0.883 9 C -0.209 4.209 10 N -0.364 5.364 11 C 0.326 3.674 12 O -0.439 6.439 13 C -0.258 4.258 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.011 4.011 17 C -0.236 4.236 18 C 0.077 3.923 19 O -0.135 6.135 20 C -0.490 4.490 21 H 0.120 0.880 22 C -0.221 4.221 23 N -0.558 5.558 24 Si 0.840 3.160 25 H -0.186 1.186 26 H -0.195 1.195 27 H -0.176 1.176 28 C -0.275 4.275 29 C -0.063 4.063 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.251 0.749 42 H 0.185 0.815 43 H 0.187 0.813 44 H 0.135 0.865 45 H 0.121 0.879 46 H 0.082 0.918 47 H 0.138 0.862 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.743 -13.005 9.486 24.707 hybrid contribution 0.287 0.341 -0.385 0.589 sum -18.456 -12.664 9.101 24.163 Atomic orbital electron populations 1.22068 0.94748 1.03211 1.01837 1.21625 0.95245 0.81084 1.03780 1.47951 1.64900 1.14966 1.06301 1.22240 1.03038 0.98355 0.84595 1.20689 0.76723 0.88466 0.83909 1.90651 1.53678 1.68232 1.32094 1.20737 0.98130 0.91301 0.88218 0.88313 1.22086 0.96041 0.99273 1.03478 1.45746 1.44910 1.35815 1.09960 1.19003 0.78517 0.79296 0.90574 1.90992 1.60739 1.51769 1.40360 1.22984 1.02213 1.04311 0.96325 1.22580 0.90161 0.90928 0.97052 1.18850 1.05700 0.93240 0.98141 1.20677 0.91314 0.98418 0.90720 1.20164 1.09215 0.92855 1.01378 1.20006 0.90608 0.94359 0.87300 1.83886 1.63172 1.30292 1.36182 1.21866 1.39358 0.84993 1.02737 0.88011 1.26656 0.96604 1.05387 0.93484 1.70174 1.42088 1.38244 1.05284 0.84563 0.79139 0.73834 0.78503 1.18640 1.19522 1.17606 1.21109 1.08909 0.99392 0.98128 1.21192 0.93860 0.95658 0.95634 0.94276 0.91387 0.89959 0.87893 0.91425 0.91692 0.88083 0.90110 0.92062 0.91368 0.89091 0.74874 0.81461 0.81301 0.86522 0.87880 0.91765 0.86187 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.24 71.98 0.74 -1.03 16 2 C 0.10 1.38 6.17 86.38 0.53 1.91 16 3 N -0.61 -9.89 2.87 -846.76 -2.43 -12.32 16 4 C 0.06 0.70 10.00 127.77 1.28 1.97 16 5 C 0.51 11.12 6.95 87.66 0.61 11.73 16 6 O -0.57 -15.15 15.45 -3.04 -0.05 -15.19 16 7 C 0.12 2.75 2.12 44.24 0.09 2.84 16 8 H 0.10 2.46 6.62 -2.39 -0.02 2.45 16 9 C -0.15 -2.82 9.20 71.98 0.66 -2.15 16 10 N -0.71 -16.27 5.03 -450.49 -2.27 -18.54 16 11 C 0.54 14.69 6.66 86.33 0.58 15.26 16 12 O -0.56 -20.47 12.14 -4.40 -0.05 -20.52 16 13 C -0.24 -5.06 9.85 23.61 0.23 -4.83 16 14 C 0.01 0.28 9.80 23.82 0.23 0.51 16 15 C -0.16 -5.45 4.52 -20.13 -0.09 -5.54 16 16 C 0.01 0.27 6.72 22.55 0.15 0.43 16 17 C -0.22 -10.34 9.97 22.35 0.22 -10.11 16 18 C 0.13 6.85 6.66 22.72 0.15 7.00 16 19 O -0.23 -14.43 9.74 -20.29 -0.20 -14.62 16 20 C -0.41 -24.80 9.44 67.94 0.64 -24.16 16 21 H 0.10 5.60 5.27 -2.91 -0.02 5.59 16 22 C -0.02 -1.38 5.49 84.86 0.47 -0.92 16 23 N -0.92 -57.55 13.67 21.62 0.30 -57.25 16 24 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 28 C -0.26 -11.86 9.11 22.34 0.20 -11.66 16 29 C -0.05 -1.67 9.79 22.55 0.22 -1.45 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 34 H 0.07 1.15 7.39 -2.39 -0.02 1.13 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.67 8.11 -2.39 -0.02 0.65 16 37 H 0.08 1.00 4.49 -2.39 -0.01 0.99 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 1.30 6.29 -2.39 -0.02 1.29 16 41 H 0.41 8.29 7.70 -92.70 -0.71 7.58 16 42 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 43 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.12 4.13 7.03 -2.91 -0.02 4.11 16 45 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 46 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.12 5.57 5.69 -2.91 -0.02 5.55 16 48 H 0.15 4.17 8.06 -2.92 -0.02 4.15 16 Total: -1.00 -83.26 398.51 4.52 -78.74 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.28 Total: 34.33 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 6.92 Total: -20.19 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -4.40 Total: -88.12 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -0.30 Total: -50.34 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -83.26 4.52 -78.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492043435.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.596 kcal (2) G-P(sol) polarization free energy of solvation -83.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds